Wall clock time and date at job start Sat Apr 11 2020 04:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 120.00273 * 2 1 4 4 H 1.48497 * 109.47319 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46816 * 300.00279 * 3 2 1 6 6 H 1.48501 * 109.47099 * 59.99932 * 3 2 1 7 7 C 1.38955 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99918 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99464 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99813 * 359.72559 * 10 9 7 12 12 C 1.50694 * 119.99988 * 179.72439 * 10 9 7 13 13 N 1.46903 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.46849 * 111.00057 * 66.04731 * 13 12 10 15 15 C 1.53029 * 109.52391 * 185.84066 * 14 13 12 16 16 C 1.53121 * 109.27994 * 300.82167 * 15 14 13 17 17 H 1.09004 * 109.51612 * 297.68649 * 16 15 14 18 18 N 1.46495 * 109.52549 * 177.56281 * 16 15 14 19 19 C 1.34775 * 120.00255 * 84.99577 * 18 16 15 20 20 O 1.21625 * 120.00323 * 359.97438 * 19 18 16 21 21 C 1.47264 * 120.00074 * 180.02562 * 19 18 16 22 22 C 1.46684 * 126.94490 * 179.97438 * 21 19 18 23 23 C 1.34483 * 106.33550 * 179.97438 * 22 21 19 24 24 N 1.36443 * 108.85886 * 0.02562 * 23 22 21 25 25 H 0.97000 * 124.85850 * 180.02562 * 24 23 22 26 26 C 1.34661 * 110.29715 * 359.74860 * 24 23 22 27 27 C 1.53115 * 109.16241 * 57.64933 * 16 15 14 28 28 H 1.09010 * 109.49879 * 62.29346 * 27 16 15 29 29 O 1.42902 * 109.50448 * 182.40407 * 27 16 15 30 30 C 1.46850 * 111.00062 * 190.25471 * 13 12 10 31 31 H 0.97000 * 119.99610 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00868 * 359.72070 * 9 7 2 33 33 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 34 34 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 35 35 H 1.09008 * 109.45802 * 305.85434 * 14 13 12 36 36 H 1.08996 * 109.46490 * 65.83046 * 14 13 12 37 37 H 1.09000 * 109.50473 * 60.75953 * 15 14 13 38 38 H 1.08999 * 109.50837 * 180.83850 * 15 14 13 39 39 H 0.97003 * 119.99732 * 264.99700 * 18 16 15 40 40 H 1.08005 * 126.83195 * 0.02562 * 22 21 19 41 41 H 1.08003 * 125.57709 * 180.02562 * 23 22 21 42 42 H 1.08001 * 125.80561 * 180.29793 * 26 24 23 43 43 H 0.96705 * 113.99985 * 179.97438 * 29 27 16 44 44 H 1.08995 * 109.46329 * 294.17824 * 30 13 12 45 45 H 1.09003 * 109.45697 * 54.14573 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 -0.0045 12 6 1.2436 -4.8629 0.0068 13 7 2.1982 -5.9795 0.0061 14 6 2.9680 -6.0146 1.2562 15 6 4.0478 -7.0948 1.1618 16 6 3.3846 -8.4519 0.9107 17 1 2.7389 -8.7030 1.7522 18 7 4.4165 -9.4810 0.7614 19 6 4.9327 -10.0810 1.8523 20 8 4.5422 -9.7678 2.9607 21 6 5.9705 -11.1150 1.7023 22 6 6.6336 -11.8611 2.7771 23 6 7.5033 -12.6941 2.1785 24 7 7.4254 -12.5169 0.8279 25 1 7.9529 -13.0015 0.1738 26 6 6.5070 -11.5775 0.5322 27 6 2.5503 -8.3742 -0.3708 28 1 3.2030 -8.1620 -1.2177 29 8 1.8832 -9.6201 -0.5822 30 6 1.5139 -7.2568 -0.2320 31 1 -0.4849 0.8401 0.0004 32 1 0.3533 -2.3907 0.0043 33 1 0.6207 -4.9185 0.8995 34 1 0.6133 -4.9228 -0.8804 35 1 3.4378 -5.0448 1.4207 36 1 2.3003 -6.2403 2.0877 37 1 4.7240 -6.8625 0.3391 38 1 4.6093 -7.1308 2.0953 39 1 4.7283 -9.7306 -0.1226 40 1 6.4577 -11.7618 3.8381 41 1 8.1567 -13.3897 2.6842 42 1 6.2405 -11.2447 -0.4601 43 1 1.3346 -9.6425 -1.3783 44 1 0.8530 -7.4766 0.6064 45 1 0.9276 -7.1893 -1.1484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099840708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:38:42 Heat of formation + Delta-G solvation = -64.308817 kcal Electronic energy + Delta-G solvation = -28647.356256 eV Core-core repulsion = 24472.687972 eV Total energy + Delta-G solvation = -4174.668285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.36615 -39.98020 -38.69210 -37.80461 -36.00704 -34.66646 -33.83649 -31.92728 -31.23723 -30.85646 -29.65483 -29.29925 -27.05641 -24.71937 -23.48856 -22.99550 -22.05170 -20.86833 -20.23473 -19.53117 -19.20828 -18.89932 -17.89322 -17.29775 -16.56029 -16.28621 -16.01875 -15.20274 -14.95526 -14.79469 -14.64130 -14.24773 -14.14002 -14.03547 -13.90671 -13.80472 -13.54531 -13.37231 -13.10611 -12.83333 -12.60956 -12.38663 -12.33876 -11.89634 -11.54648 -11.34560 -11.21070 -11.09320 -10.74074 -10.47816 -10.33390 -10.24040 -10.20919 -9.82371 -9.48266 -9.15177 -8.95241 -8.65888 -8.44745 -7.97967 -7.87556 -6.41163 -3.81746 1.55307 2.20437 2.87589 3.16927 3.21443 3.27600 3.34690 3.54398 3.74455 3.90834 4.12064 4.27418 4.59282 4.69062 4.75451 4.89751 4.93094 5.03915 5.07961 5.22652 5.25818 5.32705 5.42131 5.53097 5.65127 5.67927 5.74022 5.76822 5.81148 5.86505 5.96383 6.11225 6.26716 6.36603 6.41426 6.49685 6.58374 6.60823 7.08628 7.22529 7.28111 7.51505 7.56285 7.59008 8.07259 8.36133 8.62356 9.18937 9.55140 10.06717 10.76642 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.022564 B = 0.002079 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.616531 B =13466.136519 C =14162.628566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.444 3.556 11 O -0.576 6.576 12 C 0.047 3.953 13 N -0.512 5.512 14 C 0.052 3.948 15 C -0.119 4.119 16 C 0.157 3.843 17 H 0.090 0.910 18 N -0.717 5.717 19 C 0.589 3.411 20 O -0.545 6.545 21 C -0.225 4.225 22 C -0.142 4.142 23 C -0.025 4.025 24 N -0.552 5.552 25 H 0.417 0.583 26 C 0.045 3.955 27 C 0.103 3.897 28 H 0.071 0.929 29 O -0.563 6.563 30 C 0.027 3.973 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.027 0.973 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.396 0.604 40 H 0.148 0.852 41 H 0.170 0.830 42 H 0.171 0.829 43 H 0.378 0.622 44 H 0.041 0.959 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.347 -25.499 -2.529 26.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.461 6.461 12 C -0.084 4.084 13 N -0.238 5.238 14 C -0.076 4.076 15 C -0.158 4.158 16 C 0.052 3.948 17 H 0.108 0.892 18 N -0.366 5.366 19 C 0.377 3.623 20 O -0.423 6.423 21 C -0.235 4.235 22 C -0.166 4.166 23 C -0.152 4.152 24 N -0.147 5.147 25 H 0.253 0.747 26 C -0.092 4.092 27 C 0.043 3.957 28 H 0.089 0.911 29 O -0.367 6.367 30 C -0.103 4.103 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.046 0.954 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.229 0.771 40 H 0.165 0.835 41 H 0.187 0.813 42 H 0.188 0.812 43 H 0.225 0.775 44 H 0.060 0.940 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.473 -25.276 -1.616 27.041 hybrid contribution -0.843 0.585 -0.700 1.242 sum 8.630 -24.690 -2.316 26.257 Atomic orbital electron populations 1.69619 1.05935 1.28031 1.50731 1.25266 0.95637 0.99731 0.97393 0.85804 0.79718 0.81169 0.77676 1.19217 1.20789 1.20790 1.19745 0.93383 0.82168 1.47386 0.87831 1.41874 1.09201 1.04593 1.64430 1.19712 0.88413 0.84507 0.84454 1.90490 1.13640 1.86858 1.55062 1.21840 0.93879 0.91082 1.01643 1.61504 1.24933 1.00903 1.36464 1.22281 0.95034 1.01543 0.88715 1.21916 0.98608 0.92113 1.03170 1.21025 0.88524 0.87858 0.97391 0.89160 1.45725 1.41444 1.40628 1.08844 1.17395 0.80571 0.80124 0.84177 1.90771 1.61496 1.64770 1.25303 1.20527 1.04797 1.04694 0.93513 1.21990 0.98091 0.97685 0.98824 1.21810 1.05438 1.05472 0.82486 1.41591 1.32697 1.32457 1.07938 0.74717 1.21941 0.94034 0.94035 0.99151 1.22020 0.93027 0.83095 0.97520 0.91128 1.86567 1.66481 1.34270 1.49399 1.22750 0.95773 0.90037 1.01693 0.91944 0.77498 0.93260 0.89299 0.87195 0.95448 0.90481 0.90400 0.77071 0.83462 0.81316 0.81162 0.77501 0.94043 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.16 5.29 -10.96 -0.06 -14.21 16 10 C 0.44 10.30 7.46 -10.98 -0.08 10.22 16 11 O -0.58 -15.20 13.92 5.54 0.08 -15.12 16 12 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 13 N -0.51 -8.30 4.39 -236.12 -1.04 -9.33 16 14 C 0.05 0.88 5.11 -3.84 -0.02 0.86 16 15 C -0.12 -1.76 5.67 -26.65 -0.15 -1.91 16 16 C 0.16 2.08 2.20 -67.81 -0.15 1.93 16 17 H 0.09 1.41 7.58 -51.93 -0.39 1.02 16 18 N -0.72 -8.39 4.99 -54.82 -0.27 -8.67 16 19 C 0.59 8.25 7.77 -12.59 -0.10 8.15 16 20 O -0.55 -9.86 16.64 5.26 0.09 -9.77 16 21 C -0.22 -2.51 6.29 -103.35 -0.65 -3.16 16 22 C -0.14 -1.46 10.97 -37.50 -0.41 -1.87 16 23 C -0.02 -0.17 11.89 -16.83 -0.20 -0.37 16 24 N -0.55 -2.95 5.90 -12.84 -0.08 -3.03 16 25 H 0.42 0.73 8.96 -40.82 -0.37 0.37 16 26 C 0.04 0.32 11.40 -16.84 -0.19 0.13 16 27 C 0.10 1.16 3.13 -26.66 -0.08 1.08 16 28 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 29 O -0.56 -5.65 13.23 -35.23 -0.47 -6.12 16 30 C 0.03 0.33 5.08 -3.84 -0.02 0.31 16 31 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.39 9.42 7.90 -40.82 -0.32 9.09 16 33 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 34 H 0.09 1.38 7.98 -51.93 -0.41 0.96 16 35 H 0.11 2.22 5.80 -51.92 -0.30 1.92 16 36 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.40 3.47 7.55 -40.82 -0.31 3.17 16 40 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 41 H 0.17 0.61 8.06 -52.48 -0.42 0.19 16 42 H 0.17 0.70 7.45 -52.49 -0.39 0.31 16 43 H 0.38 2.17 9.08 45.56 0.41 2.59 16 44 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 LS Contribution 376.63 15.07 5.68 5.68 Total: -1.00 -36.65 376.63 -8.08 -44.74 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -5.39 Total: 15.32 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -2.32 Total: 8.26 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.72 Total: -59.00 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.30 Total: -31.01 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.65 -8.08 -44.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099840708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.571 kcal (2) G-P(sol) polarization free energy of solvation -36.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds