Wall clock time and date at job start Sat Apr 11 2020 04:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 120.00273 * 2 1 4 4 H 1.48497 * 109.47319 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46816 * 300.00279 * 3 2 1 6 6 H 1.48501 * 109.47099 * 59.99932 * 3 2 1 7 7 C 1.38955 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99918 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99464 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99813 * 359.72559 * 10 9 7 12 12 C 1.50694 * 119.99988 * 179.72439 * 10 9 7 13 13 N 1.46903 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.46849 * 111.00057 * 66.04731 * 13 12 10 15 15 C 1.53029 * 109.52391 * 185.84066 * 14 13 12 16 16 C 1.53121 * 109.27994 * 300.82167 * 15 14 13 17 17 H 1.09004 * 109.51612 * 297.68649 * 16 15 14 18 18 N 1.46495 * 109.52549 * 177.56281 * 16 15 14 19 19 C 1.34775 * 120.00255 * 84.99577 * 18 16 15 20 20 O 1.21625 * 120.00323 * 359.97438 * 19 18 16 21 21 C 1.47264 * 120.00074 * 180.02562 * 19 18 16 22 22 C 1.46684 * 126.94490 * 179.97438 * 21 19 18 23 23 C 1.34483 * 106.33550 * 179.97438 * 22 21 19 24 24 N 1.36443 * 108.85886 * 0.02562 * 23 22 21 25 25 H 0.97000 * 124.85850 * 180.02562 * 24 23 22 26 26 C 1.34661 * 110.29715 * 359.74860 * 24 23 22 27 27 C 1.53115 * 109.16241 * 57.64933 * 16 15 14 28 28 H 1.09010 * 109.49879 * 62.29346 * 27 16 15 29 29 O 1.42902 * 109.50448 * 182.40407 * 27 16 15 30 30 C 1.46850 * 111.00062 * 190.25471 * 13 12 10 31 31 H 0.97000 * 119.99610 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00868 * 359.72070 * 9 7 2 33 33 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 34 34 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 35 35 H 1.09008 * 109.45802 * 305.85434 * 14 13 12 36 36 H 1.08996 * 109.46490 * 65.83046 * 14 13 12 37 37 H 1.09000 * 109.50473 * 60.75953 * 15 14 13 38 38 H 1.08999 * 109.50837 * 180.83850 * 15 14 13 39 39 H 0.97003 * 119.99732 * 264.99700 * 18 16 15 40 40 H 1.08005 * 126.83195 * 0.02562 * 22 21 19 41 41 H 1.08003 * 125.57709 * 180.02562 * 23 22 21 42 42 H 1.08001 * 125.80561 * 180.29793 * 26 24 23 43 43 H 0.96705 * 113.99985 * 179.97438 * 29 27 16 44 44 H 1.08995 * 109.46329 * 294.17824 * 30 13 12 45 45 H 1.09003 * 109.45697 * 54.14573 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 -0.0045 12 6 1.2436 -4.8629 0.0068 13 7 2.1982 -5.9795 0.0061 14 6 2.9680 -6.0146 1.2562 15 6 4.0478 -7.0948 1.1618 16 6 3.3846 -8.4519 0.9107 17 1 2.7389 -8.7030 1.7522 18 7 4.4165 -9.4810 0.7614 19 6 4.9327 -10.0810 1.8523 20 8 4.5422 -9.7678 2.9607 21 6 5.9705 -11.1150 1.7023 22 6 6.6336 -11.8611 2.7771 23 6 7.5033 -12.6941 2.1785 24 7 7.4254 -12.5169 0.8279 25 1 7.9529 -13.0015 0.1738 26 6 6.5070 -11.5775 0.5322 27 6 2.5503 -8.3742 -0.3708 28 1 3.2030 -8.1620 -1.2177 29 8 1.8832 -9.6201 -0.5822 30 6 1.5139 -7.2568 -0.2320 31 1 -0.4849 0.8401 0.0004 32 1 0.3533 -2.3907 0.0043 33 1 0.6207 -4.9185 0.8995 34 1 0.6133 -4.9228 -0.8804 35 1 3.4378 -5.0448 1.4207 36 1 2.3003 -6.2403 2.0877 37 1 4.7240 -6.8625 0.3391 38 1 4.6093 -7.1308 2.0953 39 1 4.7283 -9.7306 -0.1226 40 1 6.4577 -11.7618 3.8381 41 1 8.1567 -13.3897 2.6842 42 1 6.2405 -11.2447 -0.4601 43 1 1.3346 -9.6425 -1.3783 44 1 0.8530 -7.4766 0.6064 45 1 0.9276 -7.1893 -1.1484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099840708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:38:39 Heat of formation + Delta-G solvation = -97.170467 kcal Electronic energy + Delta-G solvation = -28648.781244 eV Core-core repulsion = 24472.687972 eV Total energy + Delta-G solvation = -4176.093273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 3.38 seconds Orbital eigenvalues (eV) -42.01659 -41.10166 -40.14487 -39.16955 -37.13011 -35.93842 -35.66032 -33.34343 -32.88730 -31.67390 -30.71152 -30.07877 -28.49062 -26.44230 -24.67771 -24.08658 -23.11480 -21.50422 -21.35297 -21.00331 -20.38675 -19.86742 -19.54090 -18.25261 -17.80343 -17.39719 -17.28607 -16.62107 -16.42301 -16.12752 -15.90812 -15.55219 -15.51943 -15.19023 -14.93185 -14.73207 -14.68691 -14.51848 -14.10278 -13.93972 -13.73429 -13.65915 -13.48400 -13.25279 -13.02229 -12.91014 -12.58069 -12.49240 -12.37736 -12.14366 -12.07691 -11.57732 -11.44406 -11.13474 -10.91521 -10.27611 -10.12290 -9.97362 -9.70911 -9.28835 -9.27662 -8.45203 -5.93182 0.80506 1.37034 1.42268 1.56022 1.56257 2.07384 2.18291 2.28362 2.49772 2.60314 2.62000 3.16647 3.21655 3.38553 3.71541 3.92481 3.99214 4.05354 4.12333 4.14553 4.23098 4.33840 4.39969 4.41604 4.48307 4.53248 4.59364 4.67020 4.70804 4.79199 4.93908 5.01446 5.05605 5.13092 5.21224 5.42987 5.49684 5.74682 5.83813 5.96439 6.03293 6.13413 6.62618 6.65091 6.74765 6.90026 7.15175 7.37869 7.58879 8.14708 8.72435 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.022564 B = 0.002079 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.616531 B =13466.136519 C =14162.628566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.329 4.329 8 H 0.079 0.921 9 N -0.575 5.575 10 C 0.442 3.558 11 O -0.612 6.612 12 C 0.058 3.942 13 N -0.521 5.521 14 C 0.058 3.942 15 C -0.107 4.107 16 C 0.161 3.839 17 H 0.063 0.937 18 N -0.702 5.702 19 C 0.582 3.418 20 O -0.602 6.602 21 C -0.274 4.274 22 C -0.188 4.188 23 C -0.002 4.002 24 N -0.534 5.534 25 H 0.439 0.561 26 C 0.072 3.928 27 C 0.119 3.881 28 H 0.086 0.914 29 O -0.567 6.567 30 C 0.027 3.973 31 H 0.277 0.723 32 H 0.396 0.604 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.070 0.930 36 H 0.026 0.974 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.413 0.587 40 H 0.128 0.872 41 H 0.204 0.796 42 H 0.207 0.793 43 H 0.400 0.600 44 H 0.040 0.960 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.676 -27.462 -5.051 29.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.458 4.458 8 H 0.097 0.903 9 N -0.213 5.213 10 C 0.229 3.771 11 O -0.498 6.498 12 C -0.073 4.073 13 N -0.247 5.247 14 C -0.071 4.071 15 C -0.146 4.146 16 C 0.055 3.945 17 H 0.081 0.919 18 N -0.352 5.352 19 C 0.373 3.627 20 O -0.485 6.485 21 C -0.284 4.284 22 C -0.212 4.212 23 C -0.130 4.130 24 N -0.130 5.130 25 H 0.280 0.720 26 C -0.066 4.066 27 C 0.059 3.941 28 H 0.104 0.896 29 O -0.375 6.375 30 C -0.102 4.102 31 H 0.086 0.914 32 H 0.230 0.770 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.250 0.750 40 H 0.146 0.854 41 H 0.221 0.779 42 H 0.224 0.776 43 H 0.251 0.749 44 H 0.058 0.942 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.797 -27.291 -4.212 29.301 hybrid contribution -0.900 1.075 0.073 1.403 sum 8.898 -26.217 -4.138 27.993 Atomic orbital electron populations 1.69676 1.06778 1.29125 1.50639 1.26022 0.96547 1.02365 0.96497 0.84886 0.78045 0.77257 0.78246 1.19829 1.19554 1.19838 1.19677 0.92658 0.83966 1.49536 0.90310 1.41937 1.09313 1.04684 1.65342 1.20747 0.88329 0.85888 0.82139 1.90472 1.15611 1.87719 1.55971 1.21743 0.93527 0.88328 1.03740 1.61456 1.25319 1.02304 1.35669 1.22076 0.95529 1.00007 0.89471 1.21740 0.97902 0.92777 1.02230 1.20814 0.88722 0.87009 0.97954 0.91927 1.45540 1.40691 1.39689 1.09310 1.17949 0.80708 0.80362 0.83678 1.90726 1.63561 1.66772 1.27425 1.20473 1.06204 1.06016 0.95697 1.22091 1.00576 1.00083 0.98481 1.22201 1.03826 1.04042 0.82933 1.41651 1.31824 1.31498 1.08010 0.72049 1.22337 0.92441 0.92603 0.99232 1.21744 0.92675 0.83273 0.96434 0.89618 1.86539 1.66917 1.33002 1.51084 1.22896 0.96086 0.88176 1.03012 0.91390 0.77032 0.91798 0.86235 0.91176 0.95549 0.90462 0.92228 0.75044 0.85352 0.77891 0.77627 0.74901 0.94162 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.86 13.05 21.66 0.28 -49.58 16 2 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 3 Si 0.99 43.28 29.55 68.60 2.03 45.31 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.33 -18.68 9.68 84.04 0.81 -17.87 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.58 -29.43 5.29 -306.97 -1.62 -31.05 16 10 C 0.44 20.84 7.46 87.65 0.65 21.49 16 11 O -0.61 -33.40 13.92 -3.08 -0.04 -33.44 16 12 C 0.06 1.96 5.45 85.55 0.47 2.42 16 13 N -0.52 -16.41 4.39 -900.94 -3.96 -20.37 16 14 C 0.06 2.01 5.11 86.32 0.44 2.45 16 15 C -0.11 -3.30 5.67 30.64 0.17 -3.13 16 16 C 0.16 4.26 2.20 45.07 0.10 4.36 16 17 H 0.06 2.04 7.58 -2.39 -0.02 2.02 16 18 N -0.70 -16.16 4.99 -445.59 -2.22 -18.38 16 19 C 0.58 16.95 7.77 86.62 0.67 17.63 16 20 O -0.60 -23.59 16.64 -4.11 -0.07 -23.65 16 21 C -0.27 -6.07 6.29 -19.04 -0.12 -6.19 16 22 C -0.19 -3.95 10.97 23.62 0.26 -3.70 16 23 C 0.00 -0.02 11.89 83.12 0.99 0.97 16 24 N -0.53 -3.81 5.90 -194.55 -1.15 -4.96 16 25 H 0.44 -0.48 8.96 -92.71 -0.83 -1.31 16 26 C 0.07 0.84 11.40 83.92 0.96 1.80 16 27 C 0.12 2.40 3.13 30.64 0.10 2.50 16 28 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 29 O -0.57 -9.62 13.23 -148.98 -1.97 -11.59 16 30 C 0.03 0.60 5.08 86.32 0.44 1.04 16 31 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 32 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 33 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 34 H 0.12 3.37 7.98 -2.39 -0.02 3.35 16 35 H 0.07 3.02 5.80 -2.38 -0.01 3.00 16 36 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.41 6.38 7.55 -92.71 -0.70 5.68 16 40 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 41 H 0.20 0.77 8.06 -2.91 -0.02 0.75 16 42 H 0.21 0.77 7.45 -2.91 -0.02 0.75 16 43 H 0.40 2.94 9.08 -74.05 -0.67 2.26 16 44 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.11 1.86 8.01 -2.39 -0.02 1.84 16 Total: -1.00 -85.30 376.63 -4.18 -89.48 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: -1.86 Total: 34.80 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: 6.41 Total: 23.43 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -8.67 Total: -124.33 kcal Atomic # 8 Polarization: -66.61 SS G_CDS: -2.08 Total: -68.69 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -85.30 -4.18 -89.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099840708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.694 kcal (2) G-P(sol) polarization free energy of solvation -85.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.38 seconds