Wall clock time and date at job start Sat Apr 11 2020 04:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37905 * 120.06459 * 2 1 4 4 C 1.38407 * 120.22183 * 180.25462 * 3 2 1 5 5 C 1.38245 * 120.33994 * 359.44514 * 4 3 2 6 6 C 1.38287 * 120.11699 * 0.29939 * 5 4 3 7 7 F 1.35096 * 120.10873 * 179.97438 * 6 5 4 8 8 C 1.39624 * 120.06019 * 179.72428 * 2 1 3 9 9 C 1.47689 * 120.17179 * 359.97438 * 8 2 1 10 10 O 1.21568 * 120.00109 * 270.02739 * 9 8 2 11 11 N 1.34780 * 119.99619 * 90.01872 * 9 8 2 12 12 C 1.47152 * 120.98533 * 0.02562 * 11 9 8 13 13 C 1.53292 * 108.38400 * 230.51322 * 12 11 9 14 14 O 1.42962 * 109.22327 * 307.69382 * 13 12 11 15 15 C 1.42958 * 114.16470 * 62.58088 * 14 13 12 16 16 H 1.09007 * 109.51236 * 57.34901 * 15 14 13 17 17 C 1.53000 * 109.51418 * 177.44447 * 15 14 13 18 18 H 1.08996 * 109.47337 * 185.00194 * 17 15 14 19 19 C 1.53002 * 109.47167 * 305.00443 * 17 15 14 20 20 N 1.46495 * 109.46857 * 65.00222 * 17 15 14 21 21 C 1.36947 * 119.99991 * 155.00206 * 20 17 15 22 22 H 1.07998 * 119.99379 * 359.97438 * 21 20 17 23 23 C 1.38813 * 119.99767 * 180.02562 * 21 20 17 24 24 N 1.31624 * 119.99447 * 179.97438 * 23 21 20 25 25 Si 1.86791 * 120.00356 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.47191 * 90.00086 * 25 23 21 27 27 H 1.48498 * 109.47553 * 209.99828 * 25 23 21 28 28 H 1.48503 * 109.47296 * 330.00387 * 25 23 21 29 29 C 1.47147 * 120.98067 * 179.72409 * 11 9 8 30 30 H 1.09005 * 109.47090 * 270.27368 * 1 2 3 31 31 H 1.08998 * 109.47136 * 30.27493 * 1 2 3 32 32 H 1.09002 * 109.46883 * 150.27675 * 1 2 3 33 33 H 1.07998 * 119.88405 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.83330 * 179.72614 * 4 3 2 35 35 H 1.07998 * 119.94566 * 180.28063 * 5 4 3 36 36 H 1.09003 * 109.67656 * 350.23450 * 12 11 9 37 37 H 1.08997 * 109.68040 * 110.74465 * 12 11 9 38 38 H 1.08992 * 109.51649 * 67.62059 * 13 12 11 39 39 H 1.09006 * 109.50844 * 187.72429 * 13 12 11 40 40 H 1.09007 * 109.46840 * 299.99826 * 19 17 15 41 41 H 1.08996 * 109.47195 * 59.99664 * 19 17 15 42 42 H 1.08996 * 109.47179 * 179.97438 * 19 17 15 43 43 H 0.96996 * 120.00405 * 334.99964 * 20 17 15 44 44 H 0.96997 * 119.99809 * 180.02562 * 24 23 21 45 45 H 1.09002 * 109.67962 * 249.21442 * 29 11 9 46 46 H 1.09007 * 109.68220 * 9.76337 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1935 0.0000 4 6 3.5819 1.1973 -0.0053 5 6 4.2835 0.0062 0.0009 6 6 3.6050 -1.1988 0.0062 7 9 4.2908 -2.3627 0.0118 8 6 2.2064 -1.2084 0.0058 9 6 1.4731 -2.4904 0.0126 10 8 1.1713 -3.0125 1.0681 11 7 1.1384 -3.0814 -1.1516 12 6 1.4932 -2.4687 -2.4417 13 6 0.2336 -2.4141 -3.3136 14 8 -0.3569 -3.7148 -3.3696 15 6 -0.7988 -4.2119 -2.1041 16 1 -1.5138 -3.5140 -1.6683 17 6 -1.4669 -5.5750 -2.2955 18 1 -1.8819 -5.9127 -1.3459 19 6 -2.5894 -5.4523 -3.3279 20 7 -0.4740 -6.5436 -2.7666 21 6 -0.6570 -7.8805 -2.5327 22 1 -1.5331 -8.2205 -2.0006 23 6 0.2842 -8.7983 -2.9786 24 7 0.1085 -10.0831 -2.7533 25 14 1.7998 -8.2099 -3.8983 26 1 2.8914 -7.9357 -2.9294 27 1 2.2378 -9.2593 -4.8533 28 1 1.4754 -6.9668 -4.6432 29 6 0.4132 -4.3616 -1.1702 30 1 -0.3633 0.0049 1.0277 31 1 -0.3633 0.8875 -0.5181 32 1 -0.3633 -0.8925 -0.5095 33 1 1.6570 2.1283 -0.0004 34 1 4.1166 2.1357 -0.0098 35 1 5.3634 0.0166 0.0013 36 1 1.8700 -1.4592 -2.2773 37 1 2.2567 -3.0695 -2.9357 38 1 -0.4776 -1.7097 -2.8822 39 1 0.5011 -2.0912 -4.3198 40 1 -3.3282 -4.7315 -2.9773 41 1 -2.1744 -5.1145 -4.2774 42 1 -3.0651 -6.4234 -3.4645 43 1 0.3131 -6.2381 -3.2442 44 1 0.7663 -10.7244 -3.0646 45 1 1.0695 -5.1499 -1.5390 46 1 0.0745 -4.6063 -0.1634 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282936607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:39:29 Heat of formation + Delta-G solvation = -75.058967 kcal Electronic energy + Delta-G solvation = -30443.299572 eV Core-core repulsion = 26248.245165 eV Total energy + Delta-G solvation = -4195.054408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.22193 -40.79238 -39.32352 -38.15034 -35.69175 -34.66288 -33.25730 -32.30353 -31.36957 -30.41069 -28.92665 -28.05701 -27.36561 -24.65696 -23.82247 -23.28606 -22.33024 -21.97773 -19.88900 -19.58807 -18.05271 -17.62994 -17.31256 -17.01803 -16.68544 -16.19954 -15.78478 -15.46203 -15.27500 -14.91703 -14.64809 -14.32179 -14.23078 -13.96394 -13.92056 -13.71115 -13.56828 -13.12291 -12.86065 -12.64518 -12.46696 -12.31912 -12.23063 -12.15198 -11.97281 -11.73895 -11.61212 -11.34811 -10.94244 -10.85257 -10.60604 -10.37972 -10.09690 -9.98618 -9.92390 -9.54296 -9.30875 -9.10223 -8.93674 -8.54472 -7.23378 -5.73774 -3.08936 0.53979 0.70765 2.35771 2.72154 3.06640 3.41595 3.46362 3.48878 3.75226 3.81409 4.06047 4.27052 4.37743 4.63185 4.65569 4.71153 4.75738 4.86561 4.95461 5.06253 5.10255 5.17559 5.19879 5.22479 5.33457 5.47565 5.53310 5.55284 5.56916 5.61453 5.65211 5.73946 5.80392 5.84287 5.94760 6.12476 6.19120 6.28963 6.34322 6.39676 6.48487 6.72175 7.06216 7.19116 7.29673 7.94324 8.02492 8.45440 9.24332 9.96544 10.17011 11.44552 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.003657 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.771383 B = 7654.764468 C = 8456.576476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.024 4.024 3 C -0.133 4.133 4 C -0.073 4.073 5 C -0.161 4.161 6 C 0.134 3.866 7 F -0.128 7.128 8 C -0.156 4.156 9 C 0.566 3.434 10 O -0.523 6.523 11 N -0.604 5.604 12 C 0.070 3.930 13 C 0.050 3.950 14 O -0.362 6.362 15 C 0.075 3.925 16 H 0.062 0.938 17 C 0.188 3.812 18 H 0.070 0.930 19 C -0.160 4.160 20 N -0.743 5.743 21 C -0.242 4.242 22 H 0.091 0.909 23 C 0.007 3.993 24 N -0.934 5.934 25 Si 0.878 3.122 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.273 1.273 29 C 0.085 3.915 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.104 0.896 40 H 0.036 0.964 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.366 0.634 44 H 0.259 0.741 45 H 0.093 0.907 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.087 28.777 2.492 29.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.025 4.025 3 C -0.151 4.151 4 C -0.091 4.091 5 C -0.180 4.180 6 C 0.114 3.886 7 F -0.106 7.106 8 C -0.160 4.160 9 C 0.353 3.647 10 O -0.398 6.398 11 N -0.337 5.337 12 C -0.053 4.053 13 C -0.028 4.028 14 O -0.280 6.280 15 C 0.016 3.984 16 H 0.080 0.920 17 C 0.078 3.922 18 H 0.088 0.912 19 C -0.220 4.220 20 N -0.387 5.387 21 C -0.372 4.372 22 H 0.109 0.891 23 C -0.189 4.189 24 N -0.581 5.581 25 Si 0.708 3.292 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.199 1.199 29 C -0.037 4.037 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.122 0.878 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.199 0.801 44 H 0.069 0.931 45 H 0.111 0.889 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.837 28.078 2.971 28.494 hybrid contribution 1.540 0.226 -0.527 1.644 sum 5.377 28.304 2.445 28.914 Atomic orbital electron populations 1.20937 0.89896 1.03514 1.03653 1.19800 0.96545 0.90736 0.95390 1.21045 0.94215 0.97544 1.02298 1.21136 0.94059 0.97665 0.96270 1.21113 1.01235 0.90763 1.04844 1.17677 0.88290 0.82121 1.00470 1.91573 1.79226 1.46460 1.93332 1.19853 0.92347 0.94860 1.08907 1.18022 0.79079 0.83778 0.83869 1.90829 1.54091 1.64543 1.30372 1.48221 1.56659 1.23547 1.05320 1.22497 0.99018 0.99393 0.84425 1.22889 0.93092 0.86423 1.00445 1.88090 1.78643 1.31565 1.29725 1.23079 0.94071 0.97499 0.83768 0.92049 1.20240 0.89693 0.85161 0.97080 0.91238 1.22294 0.98205 1.00839 1.00614 1.42776 1.23942 1.03500 1.68480 1.19071 1.06666 0.80833 1.30643 0.89111 1.24630 0.98409 0.95081 1.00763 1.69698 1.36690 1.00156 1.51585 0.86636 0.84449 0.77943 0.80182 1.21167 1.21789 1.19920 1.22596 0.94590 0.83938 1.02569 0.89851 0.90311 0.91179 0.84611 0.84478 0.84080 0.89355 0.90131 0.92933 0.87791 0.94523 0.92576 0.92299 0.80059 0.93099 0.88895 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.62 36.00 0.35 -0.64 16 2 C -0.02 -0.22 5.74 -104.23 -0.60 -0.82 16 3 C -0.13 -0.89 9.68 -39.64 -0.38 -1.27 16 4 C -0.07 -0.46 10.03 -39.52 -0.40 -0.85 16 5 C -0.16 -1.34 10.01 -39.56 -0.40 -1.73 16 6 C 0.13 1.59 7.29 -38.95 -0.28 1.31 16 7 F -0.13 -1.82 16.83 2.25 0.04 -1.79 16 8 C -0.16 -1.91 3.71 -104.91 -0.39 -2.30 16 9 C 0.57 8.79 5.26 -12.40 -0.07 8.73 16 10 O -0.52 -10.06 16.57 5.31 0.09 -9.98 16 11 N -0.60 -8.88 3.01 -173.17 -0.52 -9.40 16 12 C 0.07 0.82 6.54 -3.53 -0.02 0.79 16 13 C 0.05 0.55 6.98 37.31 0.26 0.81 16 14 O -0.36 -5.60 9.24 -35.23 -0.33 -5.93 16 15 C 0.08 1.19 2.59 -26.35 -0.07 1.13 16 16 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 17 C 0.19 3.57 2.81 -67.93 -0.19 3.38 16 18 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 19 C -0.16 -2.82 9.29 37.16 0.35 -2.47 16 20 N -0.74 -17.41 4.05 -53.43 -0.22 -17.63 16 21 C -0.24 -6.78 10.41 -15.05 -0.16 -6.93 16 22 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 23 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 24 N -0.93 -29.54 13.97 55.49 0.78 -28.77 16 25 Si 0.88 22.51 27.73 -169.99 -4.71 17.79 16 26 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 28 H -0.27 -6.68 6.52 56.52 0.37 -6.31 16 29 C 0.08 1.44 5.84 -3.30 -0.02 1.42 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.07 0.67 7.08 -51.93 -0.37 0.30 16 33 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 34 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 35 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.09 0.84 6.29 -51.93 -0.33 0.51 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.04 0.54 8.14 -51.92 -0.42 0.11 16 41 H 0.06 1.02 7.56 -51.93 -0.39 0.63 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.37 8.67 4.93 -40.82 -0.20 8.47 16 44 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 45 H 0.09 1.82 6.94 -51.93 -0.36 1.46 16 46 H 0.10 1.86 7.08 -51.93 -0.37 1.49 16 LS Contribution 377.05 15.07 5.68 5.68 Total: -1.00 -34.95 377.05 -7.99 -42.94 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.68 Total: 6.43 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -2.11 Total: 0.65 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.04 Total: -55.80 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.24 Total: -15.90 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.95 -7.99 -42.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282936607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.122 kcal (2) G-P(sol) polarization free energy of solvation -34.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds