Wall clock time and date at job start Sat Apr 11 2020 04:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38460 * 119.88967 * 2 1 4 4 C 1.38197 * 120.34142 * 180.02562 * 3 2 1 5 5 C 1.38322 * 120.11658 * 359.97438 * 4 3 2 6 6 F 1.35099 * 120.11257 * 180.02562 * 5 4 3 7 7 C 1.39820 * 119.77871 * 0.02562 * 5 4 3 8 8 C 1.47694 * 120.16574 * 179.97438 * 7 5 4 9 9 O 1.21575 * 120.00104 * 52.58384 * 8 7 5 10 10 N 1.34777 * 120.00227 * 232.57808 * 8 7 5 11 11 C 1.47152 * 120.98266 * 356.01110 * 10 8 7 12 12 C 1.53292 * 108.38427 * 129.44028 * 11 10 8 13 13 O 1.42959 * 109.22375 * 52.30520 * 12 11 10 14 14 C 1.42962 * 114.16827 * 297.42043 * 13 12 11 15 15 H 1.09005 * 109.54796 * 302.63216 * 14 13 12 16 16 C 1.52999 * 109.51602 * 182.50460 * 14 13 12 17 17 H 1.08998 * 109.47065 * 185.25111 * 16 14 13 18 18 C 1.52997 * 109.47017 * 305.25135 * 16 14 13 19 19 N 1.46499 * 109.47282 * 65.24848 * 16 14 13 20 20 C 1.36940 * 120.00303 * 154.99890 * 19 16 14 21 21 H 1.07999 * 119.99545 * 0.02562 * 20 19 16 22 22 C 1.38807 * 120.00195 * 180.02562 * 20 19 16 23 23 N 1.31617 * 120.00083 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99954 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46632 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46841 * 120.00014 * 24 22 20 27 27 H 1.48504 * 109.47050 * 240.00255 * 24 22 20 28 28 C 1.47155 * 120.98331 * 175.98917 * 10 8 7 29 29 C 1.37856 * 119.89352 * 180.29112 * 2 1 3 30 30 H 1.08993 * 109.47656 * 89.99887 * 1 2 3 31 31 H 1.09002 * 109.46520 * 209.99614 * 1 2 3 32 32 H 1.08999 * 109.46970 * 329.98974 * 1 2 3 33 33 H 1.08005 * 119.82524 * 0.03072 * 3 2 1 34 34 H 1.07999 * 119.94387 * 179.97438 * 4 3 2 35 35 H 1.08997 * 109.68396 * 249.16746 * 11 10 8 36 36 H 1.09000 * 109.68074 * 9.71710 * 11 10 8 37 37 H 1.08999 * 109.51360 * 172.22961 * 12 11 10 38 38 H 1.08994 * 109.51635 * 292.32789 * 12 11 10 39 39 H 1.08998 * 109.47223 * 60.00072 * 18 16 14 40 40 H 1.09001 * 109.47433 * 180.02562 * 18 16 14 41 41 H 1.09003 * 109.47024 * 300.00383 * 18 16 14 42 42 H 0.97004 * 120.00110 * 335.00844 * 19 16 14 43 43 H 0.97007 * 119.99791 * 180.02562 * 23 22 20 44 44 H 1.08997 * 109.68322 * 110.83644 * 28 10 8 45 45 H 1.09004 * 109.68212 * 350.27736 * 28 10 8 46 46 H 1.07999 * 120.06175 * 359.96934 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.2004 0.0000 4 6 3.5789 1.2113 -0.0005 5 6 4.2824 0.0203 -0.0005 6 9 5.6333 0.0311 -0.0005 7 6 3.5906 -1.1948 -0.0005 8 6 4.3331 -2.4715 -0.0011 9 8 5.1921 -2.6755 0.8347 10 7 4.0585 -3.4104 -0.9282 11 6 2.9652 -3.2232 -1.8951 12 6 3.5131 -3.4891 -3.3019 13 8 4.1660 -4.7607 -3.3202 14 6 5.2997 -4.8492 -2.4538 15 1 6.0208 -4.0750 -2.7165 16 6 5.9508 -6.2257 -2.6029 17 1 6.7571 -6.3268 -1.8764 18 6 4.9039 -7.3142 -2.3578 19 7 6.4928 -6.3655 -3.9567 20 6 7.5277 -7.2304 -4.1940 21 1 7.9440 -7.8096 -3.3831 22 6 8.0416 -7.3625 -5.4766 23 7 7.5346 -6.6561 -6.4647 24 14 9.4529 -8.5428 -5.8004 25 1 9.8385 -9.2128 -4.5325 26 1 9.0264 -9.5646 -6.7899 27 1 10.6152 -7.7895 -6.3362 28 6 4.8433 -4.6529 -1.0036 29 6 2.1941 -1.1951 -0.0061 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3633 0.8899 0.5140 33 1 1.6523 2.1331 0.0005 34 1 4.1106 2.1514 -0.0009 35 1 2.1584 -3.9229 -1.6771 36 1 2.5918 -2.2010 -1.8337 37 1 2.6916 -3.4912 -4.0182 38 1 4.2263 -2.7090 -3.5683 39 1 4.0977 -7.2130 -3.0842 40 1 5.3678 -8.2949 -2.4635 41 1 4.5006 -7.2101 -1.3505 42 1 6.1188 -5.8454 -4.6851 43 1 7.8936 -6.7488 -7.3612 44 1 4.2256 -5.4966 -0.6959 45 1 5.7138 -4.5774 -0.3518 46 1 1.6533 -2.1300 -0.0103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485642364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:14 Heat of formation + Delta-G solvation = -77.389843 kcal Electronic energy + Delta-G solvation = -29600.755334 eV Core-core repulsion = 25405.599852 eV Total energy + Delta-G solvation = -4195.155482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.14937 -40.77882 -39.31355 -38.21009 -35.55568 -34.59722 -32.96988 -32.59640 -31.83078 -30.22634 -28.50580 -27.32013 -27.08227 -24.98512 -24.26224 -23.46357 -22.60980 -21.78262 -19.71522 -19.49105 -17.90527 -17.60758 -17.16514 -17.00576 -16.47863 -15.97235 -15.76449 -15.31383 -15.18016 -14.96458 -14.62121 -14.41349 -14.36417 -14.09398 -13.96234 -13.79802 -13.33902 -13.21988 -12.91694 -12.58140 -12.50619 -12.34631 -12.33718 -12.04959 -11.90681 -11.70079 -11.33121 -11.12903 -10.84909 -10.72478 -10.56311 -10.30918 -10.11981 -9.88155 -9.83686 -9.64449 -9.48061 -8.95950 -8.88534 -8.53645 -6.91720 -5.71967 -3.00669 0.43412 0.68865 2.38488 2.66948 3.11466 3.46185 3.51864 3.54032 3.81114 3.96064 4.01931 4.27791 4.29120 4.58627 4.64267 4.66294 4.75289 4.87482 4.98954 5.06891 5.13968 5.15619 5.28977 5.31281 5.34094 5.42064 5.56922 5.60079 5.61068 5.66091 5.70040 5.70856 5.79960 5.94629 5.97679 5.99114 6.19113 6.31250 6.36315 6.46961 6.65909 6.83237 7.13111 7.17818 7.46288 7.74111 7.90908 8.46185 9.58189 10.15577 10.52239 11.50543 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.020184 B = 0.002631 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.929360 B =10640.124607 C =10960.525390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.102 4.102 3 C -0.073 4.073 4 C -0.153 4.153 5 C 0.141 3.859 6 F -0.124 7.124 7 C -0.155 4.155 8 C 0.561 3.439 9 O -0.523 6.523 10 N -0.604 5.604 11 C 0.064 3.936 12 C 0.046 3.954 13 O -0.357 6.357 14 C 0.076 3.924 15 H 0.064 0.936 16 C 0.185 3.815 17 H 0.060 0.940 18 C -0.162 4.162 19 N -0.719 5.719 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.014 4.014 23 N -0.931 5.931 24 Si 0.906 3.094 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.083 3.917 29 C -0.065 4.065 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.034 0.966 42 H 0.389 0.611 43 H 0.254 0.746 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.072 16.971 13.389 28.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.102 4.102 3 C -0.091 4.091 4 C -0.172 4.172 5 C 0.121 3.879 6 F -0.102 7.102 7 C -0.159 4.159 8 C 0.349 3.651 9 O -0.399 6.399 10 N -0.337 5.337 11 C -0.059 4.059 12 C -0.032 4.032 13 O -0.275 6.275 14 C 0.016 3.984 15 H 0.082 0.918 16 C 0.074 3.926 17 H 0.077 0.923 18 C -0.222 4.222 19 N -0.361 5.361 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.579 5.579 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.039 4.039 29 C -0.083 4.083 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.223 0.777 43 H 0.064 0.936 44 H 0.102 0.898 45 H 0.119 0.881 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.449 16.561 13.727 27.698 hybrid contribution 0.951 -0.191 -0.406 1.052 sum -16.497 16.370 13.321 26.788 Atomic orbital electron populations 1.20804 0.90017 1.03328 1.02908 1.19914 0.96885 0.92480 1.00928 1.21072 0.92950 0.98260 0.96814 1.21139 0.94984 0.97009 1.04057 1.17644 0.77323 0.93105 0.99850 1.91582 1.28219 1.97242 1.93129 1.19964 0.94730 0.92816 1.08394 1.18070 0.82702 0.82991 0.81383 1.90829 1.32762 1.79104 1.37238 1.48080 1.34045 1.19297 1.32299 1.22759 0.89853 1.03150 0.90093 1.22901 0.97740 0.87670 0.94912 1.88103 1.43835 1.31246 1.64287 1.22993 0.87459 1.00775 0.87142 0.91801 1.20191 0.93282 0.88893 0.90192 0.92250 1.22413 1.00305 1.00536 0.98955 1.42362 1.39610 1.50427 1.03672 1.19294 1.08119 1.15850 0.93620 0.91105 1.24740 1.00055 1.00317 0.95869 1.69691 1.44162 1.43956 1.00093 0.86133 0.82059 0.80393 0.77716 1.20552 1.21919 1.21934 1.22560 0.97316 0.84979 0.99044 1.21097 0.91306 0.98911 0.96992 0.90590 0.91127 0.91105 0.84478 0.83909 0.90080 0.88715 0.87739 0.92851 0.92420 0.92858 0.94675 0.77678 0.93637 0.89792 0.88093 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.43 10.00 36.01 0.36 -0.07 16 2 C -0.10 -0.65 5.87 -104.68 -0.61 -1.27 16 3 C -0.07 -0.45 9.69 -39.51 -0.38 -0.83 16 4 C -0.15 -1.25 10.01 -39.57 -0.40 -1.65 16 5 C 0.14 1.65 7.27 -38.96 -0.28 1.37 16 6 F -0.12 -1.78 16.61 2.25 0.04 -1.74 16 7 C -0.16 -1.82 4.94 -104.91 -0.52 -2.33 16 8 C 0.56 8.32 6.96 -12.40 -0.09 8.23 16 9 O -0.52 -9.70 16.29 5.30 0.09 -9.62 16 10 N -0.60 -8.17 3.02 -173.44 -0.52 -8.69 16 11 C 0.06 0.67 5.58 -3.54 -0.02 0.65 16 12 C 0.05 0.57 6.98 37.31 0.26 0.83 16 13 O -0.36 -6.05 9.24 -35.23 -0.33 -6.38 16 14 C 0.08 1.32 2.61 -26.58 -0.07 1.25 16 15 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 16 C 0.19 3.76 2.77 -67.93 -0.19 3.57 16 17 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 18 C -0.16 -2.99 9.06 37.16 0.34 -2.66 16 19 N -0.72 -18.44 5.10 -53.43 -0.27 -18.71 16 20 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -28.55 13.06 55.49 0.72 -27.82 16 24 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 C 0.08 1.25 5.81 -3.53 -0.02 1.23 16 29 C -0.06 -0.53 7.08 -39.19 -0.28 -0.81 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 32 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 33 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 34 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.79 4.87 -51.93 -0.25 0.54 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.11 7.55 -51.93 -0.39 0.72 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.03 0.54 6.42 -51.93 -0.33 0.20 16 42 H 0.39 10.75 7.59 -40.82 -0.31 10.44 16 43 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.08 1.17 6.27 -51.93 -0.33 0.85 16 45 H 0.10 1.62 7.11 -51.93 -0.37 1.25 16 46 H 0.14 0.93 7.24 -52.49 -0.38 0.55 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -34.85 376.68 -8.32 -43.17 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.55 Total: 6.24 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -2.14 Total: 0.19 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.07 Total: -55.23 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.24 Total: -15.99 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.85 -8.32 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.222 kcal (2) G-P(sol) polarization free energy of solvation -34.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds