Wall clock time and date at job start Sat Apr 11 2020 04:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38458 * 119.89495 * 2 1 4 4 C 1.38199 * 120.34425 * 180.02562 * 3 2 1 5 5 C 1.38324 * 120.11364 * 359.73746 * 4 3 2 6 6 F 1.35105 * 120.10812 * 180.27541 * 5 4 3 7 7 C 1.39821 * 119.78147 * 0.53549 * 5 4 3 8 8 C 1.47689 * 120.16714 * 179.74432 * 7 5 4 9 9 O 1.21574 * 120.00312 * 313.51376 * 8 7 5 10 10 N 1.34781 * 119.99823 * 133.51513 * 8 7 5 11 11 C 1.47148 * 120.98316 * 354.60883 * 10 8 7 12 12 C 1.53298 * 108.38826 * 230.55093 * 11 10 8 13 13 O 1.42958 * 109.21937 * 307.69632 * 12 11 10 14 14 C 1.42966 * 114.16732 * 62.58323 * 13 12 11 15 15 H 1.09001 * 109.51398 * 57.38484 * 14 13 12 16 16 C 1.52997 * 109.51545 * 177.49328 * 14 13 12 17 17 H 1.09003 * 109.47660 * 184.89692 * 16 14 13 18 18 C 1.52999 * 109.47105 * 304.89796 * 16 14 13 19 19 N 1.46502 * 109.47184 * 64.89473 * 16 14 13 20 20 C 1.36940 * 119.99743 * 154.99953 * 19 16 14 21 21 H 1.07997 * 120.00149 * 0.02562 * 20 19 16 22 22 C 1.38812 * 119.99578 * 180.27173 * 20 19 16 23 23 N 1.31618 * 120.00231 * 359.73581 * 22 20 19 24 24 Si 1.86802 * 120.00028 * 179.72359 * 22 20 19 25 25 H 1.48501 * 109.46535 * 60.00382 * 24 22 20 26 26 H 1.48501 * 109.47324 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47074 * 300.00884 * 24 22 20 28 28 C 1.47169 * 120.94120 * 174.66144 * 10 8 7 29 29 C 1.37859 * 119.88873 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.46896 * 269.97704 * 1 2 3 31 31 H 1.08998 * 109.47647 * 29.97293 * 1 2 3 32 32 H 1.09000 * 109.47428 * 149.97904 * 1 2 3 33 33 H 1.08006 * 119.82843 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.94750 * 180.02562 * 4 3 2 35 35 H 1.09003 * 109.68103 * 110.82424 * 11 10 8 36 36 H 1.09002 * 109.71162 * 350.29253 * 11 10 8 37 37 H 1.08996 * 109.51173 * 187.77527 * 12 11 10 38 38 H 1.08997 * 109.50959 * 67.62111 * 12 11 10 39 39 H 1.08999 * 109.47433 * 59.99504 * 18 16 14 40 40 H 1.08993 * 109.47401 * 180.02562 * 18 16 14 41 41 H 1.09002 * 109.47228 * 299.99862 * 18 16 14 42 42 H 0.97000 * 120.00191 * 335.00187 * 19 16 14 43 43 H 0.96999 * 120.00120 * 179.97438 * 23 22 20 44 44 H 1.08998 * 109.73076 * 9.75140 * 28 10 8 45 45 H 1.09004 * 109.64274 * 249.19270 * 28 10 8 46 46 H 1.08001 * 120.06312 * 359.97178 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.2004 0.0000 4 6 3.5790 1.2112 -0.0005 5 6 4.2823 0.0201 0.0044 6 9 5.6333 0.0309 0.0095 7 6 3.5905 -1.1949 -0.0014 8 6 4.3330 -2.4717 -0.0019 9 8 5.2681 -2.6308 -0.7622 10 7 3.9737 -3.4604 0.8407 11 6 2.9235 -3.2514 1.8500 12 6 3.4628 -3.7074 3.2106 13 8 3.9741 -5.0372 3.0924 14 6 5.0770 -5.1623 2.1915 15 1 5.8817 -4.4980 2.5066 16 6 5.5774 -6.6082 2.1938 17 1 6.4711 -6.6845 1.5744 18 6 5.9120 -7.0298 3.6259 19 7 4.5349 -7.4865 1.6571 20 6 4.8754 -8.6834 1.0855 21 1 5.9124 -8.9800 1.0307 22 6 3.8881 -9.5131 0.5720 23 7 2.6243 -9.1518 0.6392 24 14 4.3532 -11.1423 -0.2147 25 1 5.0526 -11.9917 0.7827 26 1 3.1254 -11.8351 -0.6813 27 1 5.2515 -10.8951 -1.3711 28 6 4.6216 -4.7803 0.7784 29 6 2.1939 -1.1952 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5141 33 1 1.6525 2.1331 0.0004 34 1 4.1108 2.1512 -0.0001 35 1 2.0421 -3.8372 1.5893 36 1 2.6616 -2.1942 1.8945 37 1 2.6579 -3.6908 3.9453 38 1 4.2613 -3.0372 3.5289 39 1 5.0184 -6.9535 4.2454 40 1 6.2689 -8.0596 3.6276 41 1 6.6876 -6.3763 4.0253 42 1 3.6034 -7.2203 1.7067 43 1 1.9344 -9.7314 0.2800 44 1 5.4846 -4.7357 0.1141 45 1 3.9113 -5.5201 0.4091 46 1 1.6531 -2.1301 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485642365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:17 Heat of formation + Delta-G solvation = -78.014085 kcal Electronic energy + Delta-G solvation = -29875.532212 eV Core-core repulsion = 25680.349660 eV Total energy + Delta-G solvation = -4195.182551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.08204 -40.63368 -39.22164 -38.09900 -35.51291 -34.54975 -32.85433 -32.35036 -31.78299 -30.11394 -28.37551 -27.71137 -26.99783 -24.62716 -24.00776 -23.49633 -22.54220 -21.71029 -19.70937 -19.35617 -17.82571 -17.48532 -17.23663 -16.89585 -16.33914 -15.95955 -15.63078 -15.34180 -14.92060 -14.77578 -14.54232 -14.40927 -14.18612 -13.99358 -13.84962 -13.69513 -13.35851 -13.16777 -12.96133 -12.43409 -12.40873 -12.26191 -12.12159 -11.88499 -11.75291 -11.61315 -11.33036 -11.18850 -10.81670 -10.76842 -10.45133 -10.31695 -10.09395 -9.87395 -9.80596 -9.56124 -9.39076 -8.90699 -8.87626 -8.37779 -6.91774 -5.72944 -3.01256 0.50220 0.77653 2.56382 2.84188 3.23875 3.47024 3.51525 3.52143 3.89184 3.98300 4.16009 4.35724 4.38794 4.62021 4.72898 4.75469 4.85467 4.99319 5.07715 5.13703 5.24253 5.30751 5.39252 5.41116 5.44754 5.50202 5.61932 5.64159 5.69267 5.70837 5.78213 5.79746 5.87631 6.01365 6.05279 6.23959 6.35794 6.41850 6.43818 6.56719 6.69266 6.81218 7.16528 7.33844 7.47687 7.73446 8.08605 8.45366 9.57604 10.13877 10.51119 11.49315 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.015582 B = 0.003019 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.540721 B = 9273.734874 C = 9631.586467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.102 4.102 3 C -0.073 4.073 4 C -0.156 4.156 5 C 0.140 3.860 6 F -0.124 7.124 7 C -0.155 4.155 8 C 0.559 3.441 9 O -0.525 6.525 10 N -0.604 5.604 11 C 0.066 3.934 12 C 0.048 3.952 13 O -0.358 6.358 14 C 0.078 3.922 15 H 0.055 0.945 16 C 0.182 3.818 17 H 0.060 0.940 18 C -0.159 4.159 19 N -0.718 5.718 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.286 1.286 28 C 0.086 3.914 29 C -0.061 4.061 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.032 0.968 42 H 0.389 0.611 43 H 0.255 0.745 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 23.635 3.139 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.102 4.102 3 C -0.091 4.091 4 C -0.175 4.175 5 C 0.120 3.880 6 F -0.102 7.102 7 C -0.159 4.159 8 C 0.346 3.654 9 O -0.401 6.401 10 N -0.337 5.337 11 C -0.057 4.057 12 C -0.030 4.030 13 O -0.276 6.276 14 C 0.018 3.982 15 H 0.073 0.927 16 C 0.072 3.928 17 H 0.078 0.922 18 C -0.219 4.219 19 N -0.360 5.360 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.207 4.207 23 N -0.580 5.580 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 C -0.035 4.035 29 C -0.080 4.080 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.122 0.878 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.224 0.776 43 H 0.064 0.936 44 H 0.116 0.884 45 H 0.120 0.880 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.692 23.209 2.739 23.660 hybrid contribution 0.215 -0.577 -0.515 0.803 sum -3.478 22.632 2.224 23.005 Atomic orbital electron populations 1.20809 0.90018 1.03403 1.02879 1.19926 0.96918 0.92462 1.00928 1.21061 0.92944 0.98214 0.96924 1.21111 0.94968 0.96920 1.04494 1.17657 0.77261 0.93138 0.99939 1.91568 1.28270 1.97249 1.93161 1.20034 0.94691 0.92886 1.08274 1.18056 0.83413 0.83020 0.80931 1.90825 1.28297 1.80911 1.40082 1.48124 1.38544 1.12951 1.34070 1.22685 0.91371 1.02428 0.89220 1.22885 0.98853 0.85704 0.95549 1.88107 1.49572 1.26103 1.63866 1.22923 0.88036 0.99273 0.87919 0.92680 1.20262 0.92705 0.85832 0.94012 0.92187 1.22320 1.00208 1.00545 0.98846 1.42402 1.04718 1.19181 1.69720 1.19200 0.92729 0.94985 1.30098 0.91243 1.24706 0.95285 0.98863 1.01895 1.69656 0.98767 1.38007 1.51520 0.86300 0.76872 0.83964 0.79234 1.21348 1.21792 1.21304 1.22519 1.00424 0.81957 0.98636 1.21208 0.91459 0.99050 0.96277 0.90634 0.91164 0.90974 0.84565 0.84055 0.89786 0.89091 0.87834 0.93307 0.92460 0.92798 0.94875 0.77625 0.93568 0.88385 0.88014 0.84119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.00 36.00 0.36 -0.23 16 2 C -0.10 -0.78 5.87 -104.68 -0.61 -1.39 16 3 C -0.07 -0.51 9.69 -39.51 -0.38 -0.89 16 4 C -0.16 -1.35 10.01 -39.56 -0.40 -1.75 16 5 C 0.14 1.73 7.25 -38.96 -0.28 1.44 16 6 F -0.12 -1.81 16.44 2.25 0.04 -1.78 16 7 C -0.15 -2.00 4.91 -104.91 -0.51 -2.51 16 8 C 0.56 9.18 7.06 -12.40 -0.09 9.10 16 9 O -0.52 -10.65 16.01 5.30 0.08 -10.56 16 10 N -0.60 -9.32 3.02 -173.43 -0.52 -9.85 16 11 C 0.07 0.79 5.27 -3.53 -0.02 0.77 16 12 C 0.05 0.60 6.99 37.31 0.26 0.86 16 13 O -0.36 -6.06 9.24 -35.23 -0.33 -6.38 16 14 C 0.08 1.36 2.57 -26.58 -0.07 1.29 16 15 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 16 C 0.18 3.67 2.80 -67.93 -0.19 3.48 16 17 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 18 C -0.16 -2.98 9.30 37.16 0.35 -2.64 16 19 N -0.72 -17.70 4.24 -53.43 -0.23 -17.93 16 20 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 24 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 28 C 0.09 1.56 5.84 -3.52 -0.02 1.53 16 29 C -0.06 -0.61 7.19 -39.19 -0.28 -0.89 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 32 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 0.87 5.26 -51.93 -0.27 0.59 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 1.12 7.56 -51.93 -0.39 0.73 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.39 10.28 7.08 -40.82 -0.29 9.99 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.08 16 44 H 0.10 1.89 7.06 -51.93 -0.37 1.52 16 45 H 0.10 2.12 6.93 -51.93 -0.36 1.76 16 46 H 0.14 1.29 7.15 -52.49 -0.38 0.91 16 LS Contribution 377.60 15.07 5.69 5.69 Total: -1.00 -33.53 377.60 -8.37 -41.90 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.67 Total: 7.53 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -2.14 Total: 1.04 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.03 Total: -54.87 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.24 Total: -16.95 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.53 -8.37 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.116 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds