Wall clock time and date at job start Sat Apr 11 2020 04:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38457 * 119.88961 * 2 1 4 4 C 1.38202 * 120.33678 * 180.02562 * 3 2 1 5 5 C 1.38316 * 120.12062 * 359.73681 * 4 3 2 6 6 F 1.35101 * 120.11678 * 180.28010 * 5 4 3 7 7 C 1.39831 * 119.77671 * 0.53249 * 5 4 3 8 8 C 1.47689 * 120.16853 * 179.74467 * 7 5 4 9 9 O 1.21570 * 120.00153 * 313.53784 * 8 7 5 10 10 N 1.34776 * 120.00276 * 133.53487 * 8 7 5 11 11 C 1.47154 * 120.97609 * 354.58885 * 10 8 7 12 12 C 1.53304 * 108.38111 * 230.55247 * 11 10 8 13 13 O 1.42963 * 109.22436 * 307.70043 * 12 11 10 14 14 C 1.42961 * 114.16323 * 62.57650 * 13 12 11 15 15 H 1.08999 * 109.51606 * 57.35015 * 14 13 12 16 16 C 1.53007 * 109.55167 * 177.46860 * 14 13 12 17 17 H 1.08995 * 109.47447 * 174.77362 * 16 14 13 18 18 C 1.53005 * 109.46624 * 54.77453 * 16 14 13 19 19 N 1.46493 * 109.47241 * 294.77739 * 16 14 13 20 20 C 1.36942 * 119.99907 * 204.99698 * 19 16 14 21 21 H 1.07996 * 120.00022 * 0.02562 * 20 19 16 22 22 C 1.38819 * 120.00035 * 179.97438 * 20 19 16 23 23 N 1.31621 * 119.99705 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99850 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47219 * 59.99999 * 24 22 20 26 26 H 1.48507 * 109.46934 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47184 * 299.99830 * 24 22 20 28 28 C 1.47149 * 120.98552 * 174.60545 * 10 8 7 29 29 C 1.37852 * 119.89017 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46615 * 269.97880 * 1 2 3 31 31 H 1.08995 * 109.46947 * 29.97805 * 1 2 3 32 32 H 1.08998 * 109.46885 * 149.97821 * 1 2 3 33 33 H 1.07998 * 119.83525 * 0.02562 * 3 2 1 34 34 H 1.08009 * 119.94074 * 179.97438 * 4 3 2 35 35 H 1.08992 * 109.68219 * 110.83591 * 11 10 8 36 36 H 1.08999 * 109.71348 * 350.29140 * 11 10 8 37 37 H 1.09007 * 109.50805 * 67.62517 * 12 11 10 38 38 H 1.08995 * 109.51286 * 187.77092 * 12 11 10 39 39 H 1.08997 * 109.47028 * 179.97438 * 18 16 14 40 40 H 1.09001 * 109.47300 * 299.99691 * 18 16 14 41 41 H 1.09003 * 109.47287 * 60.00213 * 18 16 14 42 42 H 0.97006 * 120.00617 * 24.99759 * 19 16 14 43 43 H 0.96995 * 119.99454 * 180.02562 * 23 22 20 44 44 H 1.09000 * 109.68263 * 249.16673 * 28 10 8 45 45 H 1.09003 * 109.67776 * 9.72243 * 28 10 8 46 46 H 1.08004 * 120.06150 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.2004 0.0000 4 6 3.5790 1.2112 -0.0005 5 6 4.2824 0.0203 0.0044 6 9 5.6334 0.0309 0.0096 7 6 3.5906 -1.1949 -0.0013 8 6 4.3330 -2.4716 -0.0018 9 8 5.2684 -2.6306 -0.7618 10 7 3.9736 -3.4605 0.8405 11 6 2.9234 -3.2514 1.8498 12 6 3.4627 -3.7078 3.2103 13 8 3.9739 -5.0377 3.0920 14 6 5.0766 -5.1628 2.1908 15 1 5.8812 -4.4982 2.5055 16 6 5.5779 -6.6084 2.1926 17 1 6.3564 -6.7240 1.4385 18 6 4.4158 -7.5515 1.8746 19 7 6.1241 -6.9342 3.5123 20 6 7.0635 -7.9225 3.6395 21 1 7.4020 -8.4613 2.7669 22 6 7.5815 -8.2309 4.8900 23 7 7.1693 -7.5738 5.9533 24 14 8.8634 -9.5784 5.0634 25 1 10.0597 -9.2305 4.2554 26 1 9.2512 -9.7120 6.4907 27 1 8.2980 -10.8645 4.5822 28 6 4.6200 -4.7810 0.7782 29 6 2.1940 -1.1952 -0.0005 30 1 -0.3632 -0.0004 1.0277 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6526 2.1331 0.0004 34 1 4.1108 2.1513 -0.0009 35 1 2.0420 -3.8370 1.5892 36 1 2.6618 -2.1942 1.8946 37 1 4.2614 -3.0378 3.5287 38 1 2.6580 -3.6911 3.9452 39 1 4.7730 -8.5813 1.8754 40 1 3.6373 -7.4360 2.6287 41 1 4.0094 -7.3091 0.8927 42 1 5.8204 -6.4500 4.2960 43 1 7.5316 -7.7891 6.8270 44 1 3.9092 -5.5206 0.4096 45 1 5.4824 -4.7365 0.1130 46 1 1.6532 -2.1300 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485642366.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:20 Heat of formation + Delta-G solvation = -77.765086 kcal Electronic energy + Delta-G solvation = -29566.458578 eV Core-core repulsion = 25371.286825 eV Total energy + Delta-G solvation = -4195.171754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.14068 -40.77207 -39.31183 -38.20017 -35.55122 -34.59924 -32.96714 -32.58494 -31.82146 -30.22698 -28.49829 -27.30896 -27.08354 -24.98110 -24.25142 -23.45784 -22.60268 -21.78212 -19.71066 -19.49041 -17.90170 -17.59411 -17.16484 -16.98310 -16.46769 -15.95975 -15.76945 -15.25586 -15.21983 -14.95993 -14.61986 -14.40162 -14.33290 -14.09383 -13.97936 -13.78193 -13.34965 -13.22793 -12.90940 -12.57859 -12.51010 -12.35424 -12.32279 -12.04816 -11.91380 -11.70371 -11.32537 -11.12594 -10.82383 -10.71507 -10.54246 -10.31389 -10.14642 -9.89214 -9.83921 -9.63213 -9.49416 -8.96255 -8.86940 -8.52899 -6.91335 -5.71206 -2.99958 0.40692 0.69129 2.41422 2.67111 3.14085 3.47576 3.51736 3.52749 3.81249 3.96368 4.02997 4.26961 4.28927 4.58976 4.64163 4.66063 4.75685 4.87508 4.99220 5.06989 5.13993 5.15774 5.29290 5.31260 5.34203 5.42202 5.56806 5.59876 5.61390 5.66672 5.70008 5.71112 5.80536 5.94519 5.98244 5.99491 6.19654 6.31763 6.36701 6.47446 6.66090 6.83571 7.13732 7.18197 7.46860 7.73573 7.92063 8.47057 9.58778 10.16286 10.52929 11.51229 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.021072 B = 0.002595 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.486211 B =10787.097310 C =11176.015580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.103 4.103 3 C -0.071 4.071 4 C -0.155 4.155 5 C 0.143 3.857 6 F -0.122 7.122 7 C -0.157 4.157 8 C 0.561 3.439 9 O -0.523 6.523 10 N -0.605 5.605 11 C 0.067 3.933 12 C 0.046 3.954 13 O -0.357 6.357 14 C 0.076 3.924 15 H 0.064 0.936 16 C 0.185 3.815 17 H 0.060 0.940 18 C -0.162 4.162 19 N -0.719 5.719 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 C 0.083 3.917 29 C -0.062 4.062 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.105 0.895 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.034 0.966 42 H 0.389 0.611 43 H 0.255 0.745 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.176 19.382 -12.073 28.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.104 4.104 3 C -0.090 4.090 4 C -0.174 4.174 5 C 0.123 3.877 6 F -0.101 7.101 7 C -0.161 4.161 8 C 0.348 3.652 9 O -0.399 6.399 10 N -0.339 5.339 11 C -0.056 4.056 12 C -0.032 4.032 13 O -0.275 6.275 14 C 0.016 3.984 15 H 0.082 0.918 16 C 0.074 3.926 17 H 0.077 0.923 18 C -0.222 4.222 19 N -0.360 5.360 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.039 4.039 29 C -0.080 4.080 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.123 0.877 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.223 0.777 43 H 0.065 0.935 44 H 0.102 0.898 45 H 0.120 0.880 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.541 18.982 -12.381 28.057 hybrid contribution 0.924 -0.298 0.335 1.028 sum -15.617 18.684 -12.045 27.167 Atomic orbital electron populations 1.20804 0.90020 1.03322 1.02901 1.19917 0.96894 0.92486 1.01054 1.21078 0.92954 0.98262 0.96667 1.21142 0.94983 0.97021 1.04239 1.17671 0.77359 0.93129 0.99562 1.91585 1.28169 1.97235 1.93064 1.19988 0.94679 0.92793 1.08688 1.18072 0.83305 0.83027 0.80787 1.90831 1.28006 1.80827 1.40207 1.48062 1.38810 1.12743 1.34236 1.22715 0.90845 1.02636 0.89384 1.22910 0.99207 0.85988 0.95112 1.88102 1.49253 1.25938 1.64199 1.22984 0.88267 1.00105 0.87005 0.91783 1.20194 0.93641 0.88058 0.90664 0.92261 1.22416 0.99980 1.00815 0.98994 1.42345 1.47798 1.43064 1.02839 1.19206 1.14175 1.10559 0.93108 0.91216 1.24740 1.00580 1.00007 0.95597 1.69670 1.46511 1.43613 0.98161 0.86275 0.81547 0.81828 0.76575 1.21294 1.21748 1.21295 1.22558 0.99619 0.82295 0.99475 1.21137 0.91360 0.98917 0.96632 0.90605 0.91123 0.91121 0.84490 0.83930 0.90174 0.88893 0.92845 0.87717 0.92870 0.92426 0.94698 0.77673 0.93529 0.89802 0.88029 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.43 10.01 36.01 0.36 -0.07 16 2 C -0.10 -0.66 5.87 -104.68 -0.61 -1.27 16 3 C -0.07 -0.44 9.69 -39.51 -0.38 -0.82 16 4 C -0.16 -1.25 10.01 -39.57 -0.40 -1.64 16 5 C 0.14 1.66 7.25 -38.96 -0.28 1.38 16 6 F -0.12 -1.76 16.44 2.25 0.04 -1.72 16 7 C -0.16 -1.83 4.91 -104.91 -0.51 -2.35 16 8 C 0.56 8.29 7.06 -12.40 -0.09 8.20 16 9 O -0.52 -9.72 16.01 5.30 0.08 -9.63 16 10 N -0.60 -8.14 3.02 -173.45 -0.52 -8.66 16 11 C 0.07 0.69 5.27 -3.53 -0.02 0.68 16 12 C 0.05 0.57 6.99 37.31 0.26 0.84 16 13 O -0.36 -6.06 9.25 -35.23 -0.33 -6.38 16 14 C 0.08 1.33 2.60 -26.58 -0.07 1.26 16 15 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 16 C 0.19 3.76 2.77 -67.93 -0.19 3.57 16 17 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 18 C -0.16 -2.99 9.06 37.16 0.34 -2.65 16 19 N -0.72 -18.48 5.10 -53.42 -0.27 -18.75 16 20 C -0.24 -6.74 9.93 -15.05 -0.15 -6.89 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 24 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 C 0.08 1.24 5.84 -3.54 -0.02 1.22 16 29 C -0.06 -0.51 7.19 -39.19 -0.28 -0.79 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.19 8.08 -51.93 -0.42 -0.23 16 32 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 34 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.78 5.26 -51.93 -0.27 0.51 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.11 7.56 -51.93 -0.39 0.72 16 41 H 0.03 0.53 6.42 -51.93 -0.33 0.20 16 42 H 0.39 10.78 7.59 -40.82 -0.31 10.47 16 43 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.08 1.15 6.28 -51.93 -0.33 0.83 16 45 H 0.10 1.63 7.06 -51.93 -0.37 1.26 16 46 H 0.14 0.94 7.15 -52.48 -0.38 0.57 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -34.85 376.36 -8.34 -43.19 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.56 Total: 6.28 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.14 Total: 0.18 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.07 Total: -55.30 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.24 Total: -16.02 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.85 -8.34 -43.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642366.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.578 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds