Wall clock time and date at job start Sat Apr 11 2020 04:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38458 * 119.89299 * 2 1 4 4 C 1.38202 * 120.33825 * 180.02562 * 3 2 1 5 5 C 1.38314 * 120.12270 * 359.97379 * 4 3 2 6 6 F 1.35094 * 120.11525 * 180.02562 * 5 4 3 7 7 C 1.39829 * 119.77711 * 0.02562 * 5 4 3 8 8 C 1.47691 * 120.16469 * 180.02562 * 7 5 4 9 9 O 1.21567 * 120.00312 * 52.57218 * 8 7 5 10 10 N 1.34781 * 119.99642 * 232.57006 * 8 7 5 11 11 C 1.47151 * 120.98050 * 356.00974 * 10 8 7 12 12 C 1.53303 * 108.38353 * 129.44375 * 11 10 8 13 13 O 1.42961 * 109.22383 * 52.29596 * 12 11 10 14 14 C 1.42957 * 114.17025 * 297.42247 * 13 12 11 15 15 H 1.08997 * 109.51519 * 302.65690 * 14 13 12 16 16 C 1.52995 * 109.51290 * 182.55341 * 14 13 12 17 17 H 1.09004 * 109.47369 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47289 * 60.00037 * 16 14 13 19 19 N 1.46507 * 109.47324 * 299.99915 * 16 14 13 20 20 C 1.36937 * 120.00175 * 205.00118 * 19 16 14 21 21 H 1.07995 * 119.99945 * 0.02562 * 20 19 16 22 22 C 1.38816 * 119.99805 * 180.02562 * 20 19 16 23 23 N 1.31611 * 119.99666 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00217 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46786 * 89.99969 * 24 22 20 26 26 H 1.48497 * 109.47370 * 210.00373 * 24 22 20 27 27 H 1.48506 * 109.46984 * 330.00608 * 24 22 20 28 28 C 1.47151 * 120.98258 * 175.98411 * 10 8 7 29 29 C 1.37861 * 119.88937 * 180.27314 * 2 1 3 30 30 H 1.09004 * 109.46861 * 90.00258 * 1 2 3 31 31 H 1.09001 * 109.47305 * 209.99816 * 1 2 3 32 32 H 1.08994 * 109.47282 * 329.99982 * 1 2 3 33 33 H 1.07998 * 119.82489 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.93754 * 179.97438 * 4 3 2 35 35 H 1.09002 * 109.67978 * 249.16226 * 11 10 8 36 36 H 1.08995 * 109.68417 * 9.72351 * 11 10 8 37 37 H 1.09000 * 109.50777 * 292.37823 * 12 11 10 38 38 H 1.08993 * 109.51289 * 172.22696 * 12 11 10 39 39 H 1.08997 * 109.47448 * 179.97438 * 18 16 14 40 40 H 1.09006 * 109.47128 * 299.99719 * 18 16 14 41 41 H 1.09003 * 109.47120 * 60.00177 * 18 16 14 42 42 H 0.96995 * 119.99673 * 24.99990 * 19 16 14 43 43 H 0.96997 * 120.00196 * 179.97438 * 23 22 20 44 44 H 1.08998 * 109.68215 * 110.83275 * 28 10 8 45 45 H 1.09002 * 109.68103 * 350.28391 * 28 10 8 46 46 H 1.07994 * 120.06544 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.2004 0.0000 4 6 3.5790 1.2111 -0.0005 5 6 4.2824 0.0202 -0.0005 6 9 5.6333 0.0309 -0.0005 7 6 3.5906 -1.1950 -0.0005 8 6 4.3331 -2.4717 0.0001 9 8 5.1914 -2.6753 0.8365 10 7 4.0589 -3.4110 -0.9268 11 6 2.9662 -3.2241 -1.8944 12 6 3.5150 -3.4907 -3.3008 13 8 4.1679 -4.7624 -3.3181 14 6 5.3011 -4.8504 -2.4511 15 1 6.0216 -4.0760 -2.7139 16 6 5.9529 -6.2266 -2.6000 17 1 6.8165 -6.2931 -1.9383 18 6 6.4034 -6.4234 -4.0488 19 7 4.9845 -7.2667 -2.2442 20 6 5.4216 -8.4876 -1.8043 21 1 6.4802 -8.6836 -1.7193 22 6 4.5039 -9.4733 -1.4676 23 7 4.9241 -10.6466 -1.0444 24 14 2.6729 -9.1341 -1.6140 25 1 2.2065 -9.5123 -2.9722 26 1 1.9390 -9.9314 -0.5987 27 1 2.4176 -7.6888 -1.3876 28 6 4.8438 -4.6535 -1.0012 29 6 2.1940 -1.1952 -0.0057 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.6524 2.1330 0.0004 34 1 4.1107 2.1512 -0.0009 35 1 2.1592 -3.9238 -1.6766 36 1 2.5929 -2.2019 -1.8338 37 1 4.2290 -2.7113 -3.5667 38 1 2.6939 -3.4932 -4.0176 39 1 6.8682 -7.4036 -4.1548 40 1 5.5395 -6.3571 -4.7102 41 1 7.1240 -5.6495 -4.3136 42 1 4.0337 -7.0906 -2.3202 43 1 4.2830 -11.3353 -0.8088 44 1 4.2259 -5.4970 -0.6934 45 1 5.7138 -4.5778 -0.3489 46 1 1.6533 -2.1300 -0.0097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485642367.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:23 Heat of formation + Delta-G solvation = -74.169732 kcal Electronic energy + Delta-G solvation = -30002.514107 eV Core-core repulsion = 25807.498259 eV Total energy + Delta-G solvation = -4195.015848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.17608 -40.76546 -39.34673 -38.24100 -35.70374 -34.68938 -32.95015 -32.40983 -31.87609 -30.40049 -28.93408 -27.84294 -27.09226 -24.72494 -24.14204 -23.27228 -22.61423 -21.77303 -19.85474 -19.48327 -17.99333 -17.75334 -17.45069 -17.02009 -16.50278 -16.14008 -15.73472 -15.39117 -15.08089 -14.93645 -14.57618 -14.52547 -14.31163 -14.08263 -14.01377 -13.80185 -13.55195 -13.20572 -12.89558 -12.52017 -12.49468 -12.36051 -12.32555 -12.08908 -11.92668 -11.70385 -11.62675 -11.31423 -10.94394 -10.86096 -10.63975 -10.38546 -10.09486 -9.98334 -9.91051 -9.54637 -9.47560 -8.97097 -8.94015 -8.53530 -7.23461 -5.74027 -3.08970 0.43405 0.68264 2.43031 2.70482 3.11177 3.39608 3.44068 3.47376 3.80037 3.82020 4.03793 4.27187 4.29730 4.62262 4.63097 4.64275 4.72406 4.85456 4.95467 5.01825 5.14161 5.15457 5.21985 5.28447 5.33446 5.36354 5.51978 5.55628 5.56356 5.61018 5.61333 5.66219 5.70218 5.85185 5.95316 6.12462 6.18473 6.29924 6.33318 6.39329 6.48884 6.71956 7.05195 7.19387 7.30208 7.95793 8.02897 8.45248 9.24615 9.96605 10.17848 11.44388 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.003323 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.279894 B = 8423.619568 C = 9012.424923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.101 4.101 3 C -0.074 4.074 4 C -0.153 4.153 5 C 0.139 3.861 6 F -0.125 7.125 7 C -0.153 4.153 8 C 0.560 3.440 9 O -0.521 6.521 10 N -0.605 5.605 11 C 0.062 3.938 12 C 0.048 3.952 13 O -0.363 6.363 14 C 0.075 3.925 15 H 0.061 0.939 16 C 0.189 3.811 17 H 0.070 0.930 18 C -0.160 4.160 19 N -0.743 5.743 20 C -0.242 4.242 21 H 0.091 0.909 22 C 0.005 3.995 23 N -0.934 5.934 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.293 1.293 27 H -0.277 1.277 28 C 0.085 3.915 29 C -0.065 4.065 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.036 0.964 42 H 0.367 0.633 43 H 0.259 0.741 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.210 27.614 -1.985 29.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.172 4.172 5 C 0.119 3.881 6 F -0.103 7.103 7 C -0.157 4.157 8 C 0.347 3.653 9 O -0.397 6.397 10 N -0.338 5.338 11 C -0.061 4.061 12 C -0.030 4.030 13 O -0.281 6.281 14 C 0.015 3.985 15 H 0.079 0.921 16 C 0.079 3.921 17 H 0.087 0.913 18 C -0.221 4.221 19 N -0.386 5.386 20 C -0.372 4.372 21 H 0.109 0.891 22 C -0.190 4.190 23 N -0.582 5.582 24 Si 0.714 3.286 25 H -0.211 1.211 26 H -0.220 1.220 27 H -0.204 1.204 28 C -0.036 4.036 29 C -0.083 4.083 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.155 0.845 34 H 0.160 0.840 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.122 0.878 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.200 0.800 43 H 0.069 0.931 44 H 0.112 0.888 45 H 0.120 0.880 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.601 27.120 -1.552 28.494 hybrid contribution -1.066 0.350 0.051 1.124 sum -9.667 27.471 -1.501 29.161 Atomic orbital electron populations 1.20811 0.90011 1.03416 1.02882 1.19923 0.96905 0.92459 1.00804 1.21065 0.92952 0.98228 0.96945 1.21121 0.94968 0.96951 1.04184 1.17624 0.77254 0.93084 1.00122 1.91567 1.28277 1.97248 1.93196 1.19995 0.94719 0.92869 1.08137 1.18061 0.82827 0.82984 0.81463 1.90837 1.32845 1.79111 1.36896 1.48128 1.34010 1.19395 1.32297 1.22739 0.90235 1.03195 0.89909 1.22907 0.97569 0.87186 0.95377 1.88067 1.44234 1.31746 1.64034 1.22997 0.87528 0.99848 0.88086 0.92115 1.20237 0.92273 0.84411 0.95227 0.91258 1.22313 1.00328 1.00842 0.98567 1.42732 1.03727 1.12143 1.80038 1.19081 0.94449 0.87836 1.35787 0.89144 1.24640 0.97263 0.95817 1.01311 1.69696 1.33177 1.04335 1.50980 0.86554 0.87273 0.77249 0.77477 1.21104 1.21964 1.20358 1.22499 0.97823 0.84972 0.98341 1.21141 0.91394 0.98985 0.96830 0.90622 0.91048 0.91081 0.84496 0.83957 0.89980 0.88673 0.92979 0.87772 0.92210 0.92637 0.94487 0.79971 0.93112 0.88769 0.88011 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.00 36.00 0.36 -0.14 16 2 C -0.10 -0.69 5.87 -104.68 -0.61 -1.30 16 3 C -0.07 -0.46 9.69 -39.51 -0.38 -0.85 16 4 C -0.15 -1.23 10.01 -39.57 -0.40 -1.63 16 5 C 0.14 1.62 7.27 -38.96 -0.28 1.33 16 6 F -0.12 -1.73 16.61 2.25 0.04 -1.69 16 7 C -0.15 -1.85 4.94 -104.91 -0.52 -2.37 16 8 C 0.56 8.73 6.96 -12.40 -0.09 8.64 16 9 O -0.52 -10.18 16.29 5.31 0.09 -10.09 16 10 N -0.60 -8.81 3.02 -173.44 -0.52 -9.34 16 11 C 0.06 0.69 5.58 -3.53 -0.02 0.67 16 12 C 0.05 0.54 6.99 37.31 0.26 0.80 16 13 O -0.36 -5.72 9.22 -35.23 -0.32 -6.04 16 14 C 0.07 1.22 2.53 -26.58 -0.07 1.15 16 15 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 16 C 0.19 3.62 2.74 -67.93 -0.19 3.43 16 17 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 18 C -0.16 -2.87 9.35 37.16 0.35 -2.52 16 19 N -0.74 -17.37 4.09 -53.42 -0.22 -17.59 16 20 C -0.24 -6.74 10.41 -15.06 -0.16 -6.90 16 21 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 22 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 23 N -0.93 -29.42 13.97 55.49 0.78 -28.65 16 24 Si 0.88 22.29 27.74 -169.99 -4.71 17.58 16 25 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 27 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 28 C 0.09 1.45 5.85 -3.53 -0.02 1.43 16 29 C -0.06 -0.58 7.08 -39.19 -0.28 -0.86 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 32 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 33 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 34 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 0.82 4.88 -51.93 -0.25 0.56 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.05 1.01 7.68 -51.93 -0.40 0.61 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.37 8.63 5.06 -40.82 -0.21 8.42 16 43 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 44 H 0.09 1.82 7.26 -51.93 -0.38 1.44 16 45 H 0.10 1.84 7.11 -51.93 -0.37 1.47 16 46 H 0.14 1.12 7.24 -52.49 -0.38 0.74 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -34.93 375.39 -8.00 -42.93 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.64 Total: 6.28 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.14 Total: 0.95 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.03 Total: -55.57 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.24 Total: -16.13 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.93 -8.00 -42.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642367.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.238 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds