Wall clock time and date at job start Sat Apr 11 2020 04:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35244 * 126.69090 * 2 1 4 4 C 1.42052 * 103.95648 * 179.97438 * 3 2 1 5 5 N 1.39351 * 126.89788 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00023 * 359.97438 * 5 4 3 7 7 O 1.21358 * 120.00262 * 0.27480 * 6 5 4 8 8 C 1.49384 * 119.99917 * 180.02562 * 6 5 4 9 9 O 1.21355 * 119.99924 * 6.18350 * 8 6 5 10 10 N 1.34778 * 119.99991 * 186.18402 * 8 6 5 11 11 C 1.46929 * 120.62989 * 7.96695 * 10 8 6 12 12 C 1.53185 * 108.77846 * 233.58891 * 11 10 8 13 13 C 1.53039 * 109.31144 * 305.36635 * 12 11 10 14 14 H 1.09002 * 109.46301 * 181.38407 * 13 12 11 15 15 N 1.46499 * 109.46461 * 301.34313 * 13 12 11 16 16 C 1.36938 * 120.00022 * 275.00684 * 15 13 12 17 17 H 1.07996 * 120.00263 * 359.97438 * 16 15 13 18 18 C 1.38816 * 119.99704 * 179.97438 * 16 15 13 19 19 N 1.31611 * 120.00072 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99654 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47288 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46911 * 119.99663 * 20 18 16 23 23 H 1.48498 * 109.46827 * 239.99362 * 20 18 16 24 24 C 1.53036 * 109.53814 * 61.36598 * 13 12 11 25 25 H 1.09005 * 109.49946 * 58.58771 * 24 13 12 26 26 C 1.53001 * 109.49831 * 178.64992 * 24 13 12 27 27 C 1.46917 * 120.63098 * 187.69510 * 10 8 6 28 28 N 1.30749 * 106.19764 * 0.23839 * 4 3 2 29 29 O 1.20905 * 111.47321 * 359.57377 * 28 4 3 30 30 H 1.09001 * 109.47453 * 90.00173 * 1 2 3 31 31 H 1.09004 * 109.47218 * 210.00018 * 1 2 3 32 32 H 1.08999 * 109.47525 * 329.99610 * 1 2 3 33 33 H 1.08001 * 128.02021 * 359.97438 * 3 2 1 34 34 H 0.96997 * 120.00210 * 179.97438 * 5 4 3 35 35 H 1.09003 * 109.58918 * 353.38017 * 11 10 8 36 36 H 1.08998 * 109.58315 * 113.79770 * 11 10 8 37 37 H 1.08997 * 109.49685 * 65.31944 * 12 11 10 38 38 H 1.09004 * 109.49890 * 185.42003 * 12 11 10 39 39 H 0.96998 * 119.99794 * 94.99648 * 15 13 12 40 40 H 0.97006 * 120.00400 * 180.02562 * 19 18 16 41 41 H 1.08993 * 109.47424 * 60.00292 * 26 24 13 42 42 H 1.09010 * 109.47017 * 180.02562 * 26 24 13 43 43 H 1.09003 * 109.47146 * 299.99581 * 26 24 13 44 44 H 1.08999 * 109.58534 * 246.19720 * 27 10 8 45 45 H 1.09002 * 109.58706 * 6.62117 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0845 0.0000 4 6 3.6252 0.5355 0.0006 5 7 4.8275 1.2400 0.0004 6 6 4.8189 2.5877 -0.0011 7 8 3.7640 3.1878 0.0029 8 6 6.1078 3.3429 -0.0019 9 8 7.1595 2.7480 -0.1145 10 7 6.1026 4.6849 0.1224 11 6 4.8590 5.4031 0.4331 12 6 4.6447 6.4960 -0.6187 13 6 5.8867 7.3880 -0.6821 14 1 5.7272 8.1813 -1.4124 15 7 6.1303 7.9799 0.6357 16 6 5.4833 9.1306 0.9996 17 1 4.7938 9.6020 0.3151 18 6 5.7139 9.6911 2.2485 19 7 6.5538 9.1164 3.0829 20 14 4.8318 11.2613 2.7447 21 1 3.9485 11.7043 1.6362 22 1 4.0146 11.0075 3.9583 23 1 5.8317 12.3204 3.0338 24 6 7.0982 6.5498 -1.0964 25 1 6.9076 6.0891 -2.0657 26 6 8.3325 7.4488 -1.1921 27 6 7.3414 5.4569 -0.0444 28 7 3.4764 -0.7635 -0.0043 29 8 2.3082 -1.0751 0.0006 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 2.0303 2.1263 -0.0004 34 1 5.6706 0.7604 0.0012 35 1 4.0203 4.7072 0.4132 36 1 4.9364 5.8569 1.4211 37 1 4.4772 6.0358 -1.5925 38 1 3.7779 7.0982 -0.3463 39 1 6.7498 7.5566 1.2504 40 1 6.7147 9.5078 3.9557 41 1 8.5235 7.9083 -0.2224 42 1 9.1951 6.8514 -1.4877 43 1 8.1583 8.2271 -1.9351 44 1 7.6171 5.9151 0.9054 45 1 8.1412 4.7965 -0.3797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036290521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:38:35 Heat of formation + Delta-G solvation = 34.205794 kcal Electronic energy + Delta-G solvation = -29687.035096 eV Core-core repulsion = 25516.638725 eV Total energy + Delta-G solvation = -4170.396370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.15688 -41.24105 -39.25120 -37.86427 -36.21768 -34.27849 -33.90269 -32.81093 -32.26513 -31.45103 -29.22478 -28.13505 -27.23940 -25.73877 -24.49045 -23.55087 -23.15526 -21.73591 -21.27086 -20.48330 -18.58730 -17.97534 -17.78751 -17.50139 -17.38292 -17.04916 -16.32352 -15.98052 -15.46703 -14.81887 -14.78642 -14.29002 -14.15614 -13.93416 -13.84475 -13.69866 -13.60907 -13.30575 -13.10103 -12.78076 -12.58325 -12.35842 -12.08598 -11.90888 -11.52766 -11.47705 -11.27573 -11.12877 -10.92793 -10.81010 -10.56152 -10.54115 -10.18221 -9.89473 -9.70112 -9.59932 -9.28278 -9.16549 -8.85559 -8.44776 -6.99571 -5.81296 -3.09566 0.84521 1.31095 1.81325 2.12140 2.82935 3.07411 3.23092 3.40080 3.46439 3.48266 3.95422 4.14561 4.55660 4.56270 4.72534 4.92782 5.04782 5.10836 5.20975 5.24891 5.32847 5.42975 5.55061 5.58542 5.61426 5.75206 5.79358 5.90313 5.95483 6.03199 6.05829 6.22452 6.30094 6.38362 6.46706 6.47331 6.57933 6.70637 6.73414 6.90583 6.91301 7.35824 7.44668 7.67601 7.84033 8.00950 8.37151 9.48915 10.05104 10.40040 11.41258 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.014853 B = 0.002888 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.632898 B = 9693.000447 C =10885.378676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 C -0.226 4.226 4 C 0.246 3.754 5 N -0.607 5.607 6 C 0.524 3.476 7 O -0.477 6.477 8 C 0.509 3.491 9 O -0.530 6.530 10 N -0.556 5.556 11 C 0.056 3.944 12 C -0.143 4.143 13 C 0.175 3.825 14 H 0.052 0.948 15 N -0.719 5.719 16 C -0.236 4.236 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.904 3.096 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.293 1.293 24 C -0.108 4.108 25 H 0.067 0.933 26 C -0.137 4.137 27 C 0.115 3.885 28 N -0.385 5.385 29 O 0.100 5.900 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.193 0.807 34 H 0.431 0.569 35 H 0.138 0.862 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.055 0.945 44 H 0.085 0.915 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.079 -16.799 -8.285 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.248 4.248 4 C -0.003 4.003 5 N -0.260 5.260 6 C 0.307 3.693 7 O -0.349 6.349 8 C 0.290 3.710 9 O -0.409 6.409 10 N -0.287 5.287 11 C -0.064 4.064 12 C -0.184 4.184 13 C 0.065 3.935 14 H 0.070 0.930 15 N -0.361 5.361 16 C -0.367 4.367 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.128 4.128 25 H 0.085 0.915 26 C -0.195 4.195 27 C -0.007 4.007 28 N -0.100 5.100 29 O 0.038 5.962 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.210 0.790 34 H 0.270 0.730 35 H 0.154 0.846 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.218 0.782 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.103 0.897 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.522 -17.462 -8.325 20.755 hybrid contribution -0.080 1.409 0.619 1.541 sum -7.602 -16.053 -7.705 19.361 Atomic orbital electron populations 1.20367 0.83554 1.04889 1.04298 1.24464 0.96560 0.85690 1.01921 1.22768 0.89046 1.02368 1.10644 1.20470 0.88149 0.88986 1.02737 1.42180 1.07127 1.05949 1.70710 1.20666 0.91057 0.81478 0.76145 1.90367 1.33100 1.65529 1.45938 1.19313 0.87815 0.83657 0.80232 1.90764 1.31660 1.68038 1.50419 1.48075 1.12309 1.04074 1.64264 1.23170 0.86236 0.96635 1.00343 1.22445 1.01526 0.97319 0.97132 1.20274 0.90687 0.92873 0.89689 0.93032 1.42470 1.52431 1.28300 1.12907 1.19260 1.18837 1.00150 0.98438 0.91173 1.24705 0.99964 0.99235 0.96935 1.69651 1.38883 1.41006 1.08577 0.86161 0.78810 0.83341 0.78123 1.20619 1.21978 1.22004 1.21796 0.97634 0.95692 0.97629 0.91469 1.21671 0.95644 0.98781 1.03422 1.21990 0.85103 0.92908 1.00695 1.74075 0.97644 1.12983 1.25294 1.84801 1.10363 1.32418 1.68637 0.89210 0.89707 0.88682 0.78981 0.73037 0.84576 0.89851 0.93411 0.90626 0.78200 0.93584 0.90919 0.93701 0.92615 0.89697 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.45 36.00 0.38 0.04 16 2 C -0.02 -0.20 7.48 -35.38 -0.26 -0.47 16 3 C -0.23 -2.49 9.79 -39.19 -0.38 -2.88 16 4 C 0.25 3.08 8.17 -154.94 -1.27 1.81 16 5 N -0.61 -7.46 5.41 -11.86 -0.06 -7.52 16 6 C 0.52 7.15 7.74 -11.62 -0.09 7.06 16 7 O -0.48 -6.76 10.38 5.49 0.06 -6.71 16 8 C 0.51 7.74 7.74 -11.62 -0.09 7.65 16 9 O -0.53 -8.72 15.95 5.49 0.09 -8.63 16 10 N -0.56 -8.85 2.97 -173.04 -0.51 -9.36 16 11 C 0.06 0.93 6.00 -3.71 -0.02 0.91 16 12 C -0.14 -2.41 5.78 -26.62 -0.15 -2.56 16 13 C 0.18 3.21 2.53 -67.89 -0.17 3.04 16 14 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 15 N -0.72 -16.28 3.64 -53.39 -0.19 -16.47 16 16 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -26.90 13.06 55.49 0.72 -26.17 16 20 Si 0.90 21.68 29.55 -169.99 -5.02 16.66 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 C -0.11 -1.69 2.68 -90.28 -0.24 -1.93 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 C -0.14 -2.11 9.05 37.16 0.34 -1.77 16 27 C 0.11 1.84 5.42 -3.49 -0.02 1.82 16 28 N -0.39 -4.85 12.10 31.18 0.38 -4.47 16 29 O 0.10 1.08 11.19 17.06 0.19 1.27 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.19 2.13 6.22 -52.49 -0.33 1.80 16 34 H 0.43 4.77 8.31 -40.82 -0.34 4.43 16 35 H 0.14 2.15 3.80 -56.68 -0.22 1.93 16 36 H 0.08 1.62 7.74 -51.93 -0.40 1.22 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.38 9.28 5.92 -40.82 -0.24 9.04 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.07 1.30 7.54 -51.93 -0.39 0.91 16 42 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 1.52 6.63 -51.93 -0.34 1.17 16 45 H 0.09 1.34 7.06 -51.93 -0.37 0.97 16 LS Contribution 366.39 15.07 5.52 5.52 Total: -1.00 -30.13 366.39 -7.05 -37.17 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -5.97 Total: 12.67 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -2.24 Total: 6.05 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: 0.33 Total: -64.00 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.34 Total: -14.07 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.13 -7.05 -37.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036290521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.378 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds