Wall clock time and date at job start Sat Apr 11 2020 04:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.32480 * 120.37702 * 2 1 4 4 C 1.32288 * 120.90687 * 179.97438 * 3 2 1 5 5 O 1.35459 * 119.16586 * 179.97438 * 4 3 2 6 6 N 1.32309 * 121.66990 * 359.97438 * 4 3 2 7 7 C 1.32757 * 120.65779 * 359.77177 * 6 4 3 8 8 O 1.35515 * 120.47655 * 180.27135 * 7 6 4 9 9 C 1.38181 * 120.37311 * 179.97438 * 2 1 3 10 10 C 1.50700 * 120.76808 * 359.97438 * 9 2 1 11 11 C 1.52992 * 109.47257 * 90.00115 * 10 9 2 12 12 C 1.50700 * 109.47257 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00113 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99961 * 180.02562 * 12 11 10 15 15 C 1.46494 * 119.99635 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47001 * 180.02562 * 15 14 12 17 17 H 1.08996 * 112.97031 * 53.31751 * 16 15 14 18 18 C 1.53946 * 113.77022 * 185.00333 * 16 15 14 19 19 C 1.53948 * 86.29225 * 137.90585 * 18 16 15 20 20 N 1.47584 * 113.76568 * 281.49515 * 16 15 14 21 21 C 1.36941 * 134.49563 * 41.05560 * 20 16 15 22 22 H 1.08001 * 119.99287 * 359.97438 * 21 20 16 23 23 C 1.38809 * 120.00115 * 180.02562 * 21 20 16 24 24 N 1.31621 * 120.00036 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99945 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46978 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47374 * 120.00237 * 25 23 21 28 28 H 1.48498 * 109.47308 * 240.00111 * 25 23 21 29 29 H 1.09001 * 109.46561 * 270.02517 * 1 2 3 30 30 H 1.09001 * 109.46821 * 30.01997 * 1 2 3 31 31 H 1.08992 * 109.47305 * 150.02146 * 1 2 3 32 32 H 0.96703 * 113.99288 * 90.00579 * 5 4 3 33 33 H 0.96696 * 114.00094 * 270.21371 * 8 7 6 34 34 H 1.09004 * 109.46932 * 329.99894 * 10 9 2 35 35 H 1.09005 * 109.47238 * 210.00271 * 10 9 2 36 36 H 1.09004 * 109.47330 * 60.00023 * 11 10 9 37 37 H 1.08997 * 109.47279 * 300.00509 * 11 10 9 38 38 H 0.96995 * 120.00015 * 359.72695 * 14 12 11 39 39 H 1.09005 * 109.47306 * 299.99972 * 15 14 12 40 40 H 1.09002 * 109.47518 * 60.00210 * 15 14 12 41 41 H 1.09006 * 113.73557 * 252.24630 * 18 16 15 42 42 H 1.08999 * 113.74588 * 23.55501 * 18 16 15 43 43 H 1.08997 * 113.76965 * 90.69239 * 19 18 16 44 44 H 1.09000 * 113.76696 * 221.98186 * 19 18 16 45 45 H 0.97004 * 120.00072 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1770 1.1429 0.0000 4 6 3.4998 1.1552 0.0005 5 8 4.1490 2.3441 0.0000 6 7 4.2049 0.0356 0.0015 7 6 3.5992 -1.1458 0.0066 8 8 4.3250 -2.2902 0.0132 9 6 2.2058 -1.1922 0.0005 10 6 1.4784 -2.5120 0.0017 11 6 1.2317 -2.9597 -1.4403 12 6 0.5049 -4.2798 -1.4391 13 8 0.2126 -4.8102 -0.3884 14 7 0.1798 -4.8712 -2.6059 15 6 -0.5272 -6.1542 -2.6047 16 6 -0.7727 -6.6026 -4.0468 17 1 0.1368 -6.6208 -4.6472 18 6 -1.6187 -7.8835 -4.1628 19 6 -2.3456 -7.1787 -5.3226 20 7 -1.9049 -5.9159 -4.6986 21 6 -2.3627 -4.6254 -4.7170 22 1 -1.8447 -3.8608 -4.1572 23 6 -3.4929 -4.3004 -5.4543 24 7 -4.1250 -5.2327 -6.1353 25 14 -4.1178 -2.5402 -5.4789 26 1 -3.2369 -1.6905 -4.6378 27 1 -4.1100 -2.0316 -6.8740 28 1 -5.5028 -2.4991 -4.9448 29 1 -0.3632 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5135 32 1 4.3372 2.6897 0.8833 33 1 4.5395 -2.6250 -0.8682 34 1 0.5238 -2.4003 0.5159 35 1 2.0827 -3.2595 0.5159 36 1 2.1864 -3.0714 -1.9545 37 1 0.6275 -2.2123 -1.9545 38 1 0.4101 -4.4451 -3.4463 39 1 0.0769 -6.9015 -2.0901 40 1 -1.4821 -6.0424 -2.0910 41 1 -1.0481 -8.7598 -4.4706 42 1 -2.2530 -8.0706 -3.2964 43 1 -1.8990 -7.3654 -6.2991 44 1 -3.4262 -7.3208 -5.3148 45 1 -4.9151 -5.0056 -6.6503 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733219607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:46 Heat of formation + Delta-G solvation = -16.028364 kcal Electronic energy + Delta-G solvation = -28757.120888 eV Core-core repulsion = 24584.546201 eV Total energy + Delta-G solvation = -4172.574687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.80501 -39.58078 -38.61284 -37.98197 -37.44464 -35.02117 -34.12071 -33.57624 -32.24263 -30.70150 -28.99626 -28.03417 -27.59149 -25.15690 -23.42529 -23.36125 -22.66251 -21.77789 -20.19827 -19.67275 -19.13452 -18.93741 -18.33838 -17.33185 -16.51562 -16.21311 -15.84137 -15.72183 -15.63430 -15.03901 -14.74392 -14.27581 -14.09963 -14.04243 -13.63532 -13.54106 -13.22364 -12.91888 -12.82979 -12.80945 -12.61697 -12.38907 -11.98480 -11.89470 -11.49474 -11.31208 -11.16826 -11.11666 -11.07430 -10.79917 -10.74408 -10.58498 -10.08693 -9.80799 -9.76217 -9.62336 -9.48655 -9.27307 -8.86120 -8.66042 -6.95319 -5.82335 -3.15133 0.30913 0.53286 2.52147 2.83563 2.91858 3.31593 3.33258 3.36699 3.41215 3.46384 3.89785 4.31991 4.38059 4.42387 4.60969 4.81779 4.84226 5.02058 5.03505 5.15093 5.24431 5.30661 5.35417 5.43201 5.51692 5.57119 5.66892 5.74861 5.78927 5.86149 6.02584 6.03541 6.26190 6.35746 6.38559 6.56811 6.65353 6.81678 6.93202 7.03763 7.19284 7.35679 7.53737 7.59771 7.79769 7.92436 8.45905 8.97990 9.65225 10.53568 11.34445 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.013007 B = 0.002805 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.157826 B = 9978.303301 C =11498.998433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.215 3.785 3 N -0.529 5.529 4 C 0.514 3.486 5 O -0.456 6.456 6 N -0.552 5.552 7 C 0.387 3.613 8 O -0.469 6.469 9 C -0.208 4.208 10 C -0.054 4.054 11 C -0.138 4.138 12 C 0.511 3.489 13 O -0.549 6.549 14 N -0.714 5.714 15 C 0.123 3.877 16 C 0.126 3.874 17 H 0.049 0.951 18 C -0.156 4.156 19 C 0.158 3.842 20 N -0.603 5.603 21 C -0.220 4.220 22 H 0.079 0.921 23 C -0.007 4.007 24 N -0.919 5.919 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.290 1.290 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.412 0.588 33 H 0.410 0.590 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.402 0.598 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.026 0.974 44 H 0.074 0.926 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.098 6.423 11.325 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.070 3.930 3 N -0.256 5.256 4 C 0.209 3.791 5 O -0.260 6.260 6 N -0.289 5.289 7 C 0.199 3.801 8 O -0.276 6.276 9 C -0.214 4.214 10 C -0.092 4.092 11 C -0.178 4.178 12 C 0.296 3.704 13 O -0.428 6.428 14 N -0.363 5.363 15 C -0.002 4.002 16 C 0.018 3.982 17 H 0.066 0.934 18 C -0.195 4.195 19 C 0.033 3.967 20 N -0.329 5.329 21 C -0.347 4.347 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.566 5.566 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.217 1.217 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.271 0.729 33 H 0.270 0.730 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.237 0.763 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.044 0.956 44 H 0.092 0.908 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.143 7.185 11.961 19.867 hybrid contribution -0.246 0.628 -0.724 0.989 sum 13.897 7.813 11.237 19.505 Atomic orbital electron populations 1.20961 0.86706 1.05121 1.04455 1.21427 0.97675 0.85832 0.88048 1.67870 1.08859 1.31318 1.17526 1.19807 0.83691 0.84559 0.91010 1.84731 1.76125 1.30728 1.34372 1.67387 1.44005 0.98707 1.18789 1.18947 0.86409 0.84598 0.90114 1.84708 1.73761 1.34659 1.34495 1.21651 0.94039 0.98609 1.07061 1.20162 1.01330 0.91416 0.96325 1.21638 1.01742 0.96100 0.98316 1.20399 0.79568 0.86384 0.84028 1.90687 1.55165 1.65697 1.31247 1.45999 1.58428 1.23601 1.08322 1.21762 0.96458 0.83494 0.98444 1.22501 0.92636 0.91952 0.91096 0.93378 1.23775 0.99125 0.95260 1.01349 1.22200 0.99568 0.82982 0.91945 1.46091 1.26835 1.05160 1.54859 1.18964 1.07507 0.83561 1.24705 0.90346 1.24770 0.98286 0.97640 0.99701 1.69827 1.20850 1.31260 1.34637 0.86128 0.78742 0.84068 0.77260 1.20552 1.21800 1.21684 0.88877 0.89249 0.89009 0.72865 0.72987 0.88982 0.88769 0.89340 0.88612 0.76330 0.92179 0.90955 0.92804 0.90481 0.95584 0.90817 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.44 36.01 0.34 -0.62 16 2 C 0.21 2.23 6.82 -82.33 -0.56 1.67 16 3 N -0.53 -6.20 10.40 -11.01 -0.11 -6.32 16 4 C 0.51 5.99 8.71 -91.29 -0.80 5.19 16 5 O -0.46 -4.37 13.64 -18.07 -0.25 -4.61 16 6 N -0.55 -6.65 10.49 -14.79 -0.16 -6.80 16 7 C 0.39 4.11 7.81 -16.71 -0.13 3.98 16 8 O -0.47 -4.13 12.74 -18.24 -0.23 -4.36 16 9 C -0.21 -2.08 5.18 -104.20 -0.54 -2.62 16 10 C -0.05 -0.53 3.78 -27.89 -0.11 -0.63 16 11 C -0.14 -1.37 5.57 -27.89 -0.16 -1.52 16 12 C 0.51 7.22 7.83 -10.98 -0.09 7.13 16 13 O -0.55 -9.60 15.98 5.56 0.09 -9.52 16 14 N -0.71 -10.61 5.53 -60.29 -0.33 -10.94 16 15 C 0.12 2.06 5.54 -4.04 -0.02 2.04 16 16 C 0.13 2.28 4.33 -66.86 -0.29 1.99 16 17 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.16 -2.73 7.86 -25.80 -0.20 -2.93 16 19 C 0.16 3.51 7.51 -2.97 -0.02 3.49 16 20 N -0.60 -14.09 3.57 -170.74 -0.61 -14.70 16 21 C -0.22 -5.66 10.51 -15.06 -0.16 -5.81 16 22 H 0.08 1.91 7.80 -52.49 -0.41 1.50 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 24 N -0.92 -26.34 11.39 55.49 0.63 -25.71 16 25 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.75 6.03 -51.93 -0.31 0.43 16 32 H 0.41 1.68 9.06 45.56 0.41 2.09 16 33 H 0.41 1.71 9.06 45.56 0.41 2.12 16 34 H 0.09 0.94 6.77 -51.93 -0.35 0.58 16 35 H 0.09 1.00 7.57 -51.93 -0.39 0.60 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.91 7.46 -51.93 -0.39 0.52 16 38 H 0.40 5.62 8.47 -40.82 -0.35 5.27 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.83 7.16 -51.93 -0.37 1.46 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -35.58 381.93 -7.75 -43.33 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.68 Total: 6.55 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: -2.82 Total: 11.06 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: -0.58 Total: -64.47 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.39 Total: -18.49 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.58 -7.75 -43.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733219607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.304 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds