Wall clock time and date at job start Sat Apr 11 2020 04:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.53719 * 2 1 4 4 C 1.51578 * 110.59921 * 237.16578 * 2 1 3 5 5 O 1.21242 * 127.15604 * 61.43529 * 4 2 1 6 6 N 1.35115 * 105.50577 * 241.52574 * 4 2 1 7 7 C 1.33790 * 111.68859 * 359.86546 * 6 4 2 8 8 O 1.21533 * 123.77147 * 180.09482 * 7 6 4 9 9 N 1.34525 * 112.45656 * 0.09066 * 7 6 4 10 10 C 1.46494 * 126.69191 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.47176 * 269.96076 * 10 9 7 12 12 O 1.21279 * 119.99601 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99870 * 179.97438 * 11 10 9 14 14 C 1.47873 * 126.95075 * 359.68526 * 13 11 10 15 15 C 1.55985 * 105.11803 * 181.87669 * 14 13 11 16 16 H 1.09004 * 116.81163 * 159.42056 * 15 14 13 17 17 C 1.57081 * 99.47748 * 33.16270 * 15 14 13 18 18 C 1.49293 * 126.94622 * 179.97438 * 13 11 10 19 19 H 1.09003 * 116.14717 * 16.69580 * 18 13 11 20 20 C 1.56015 * 104.09317 * 246.69971 * 18 13 11 21 21 N 1.47872 * 105.10364 * 288.76315 * 20 18 13 22 22 C 1.36939 * 126.94153 * 181.97994 * 21 20 18 23 23 H 1.08006 * 119.99381 * 180.02562 * 22 21 20 24 24 C 1.38810 * 120.00401 * 0.02978 * 22 21 20 25 25 N 1.31621 * 120.00166 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99847 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47419 * 89.99860 * 26 24 22 28 28 H 1.48507 * 109.46989 * 209.99380 * 26 24 22 29 29 H 1.48498 * 109.47350 * 329.99223 * 26 24 22 30 30 H 1.09001 * 109.47002 * 59.29893 * 1 2 3 31 31 H 1.08993 * 109.46955 * 179.30331 * 1 2 3 32 32 H 1.09000 * 109.47050 * 299.30160 * 1 2 3 33 33 H 1.09008 * 109.47157 * 60.69509 * 3 2 1 34 34 H 1.08991 * 109.47304 * 180.70259 * 3 2 1 35 35 H 1.09003 * 109.47101 * 300.70319 * 3 2 1 36 36 H 0.96999 * 124.13113 * 179.97438 * 6 4 2 37 37 H 1.08997 * 109.47149 * 29.95738 * 10 9 7 38 38 H 1.09002 * 109.47767 * 149.95651 * 10 9 7 39 39 H 1.08998 * 110.31136 * 300.91364 * 14 13 11 40 40 H 1.09001 * 110.31347 * 63.08629 * 14 13 11 41 41 H 1.09005 * 112.36779 * 191.51699 * 17 15 14 42 42 H 1.08998 * 112.37233 * 64.07172 * 17 15 14 43 43 H 1.09004 * 110.31976 * 47.67158 * 20 18 13 44 44 H 1.09003 * 110.31909 * 169.85593 * 20 18 13 45 45 H 0.96996 * 120.00404 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 6 2.0634 -0.7693 -1.1922 5 8 1.8885 -0.5160 -2.3649 6 7 2.7715 -1.7959 -0.6722 7 6 2.7599 -1.7771 0.6655 8 8 3.3287 -2.5984 1.3576 9 7 2.0483 -0.7476 1.1588 10 6 1.8315 -0.4311 2.5726 11 6 0.5882 -1.1303 3.0590 12 8 -0.0538 -1.8241 2.2992 13 7 0.1898 -0.9844 4.3382 14 6 0.8547 -0.1865 5.3908 15 6 -0.0013 -0.4134 6.6749 16 1 0.4821 -0.2095 7.6304 17 6 -0.4587 -1.8948 6.4225 18 6 -1.0087 -1.6006 4.9806 19 1 -1.4594 -2.4399 4.4510 20 6 -1.9359 -0.3866 5.2980 21 7 -1.2696 0.3271 6.4086 22 6 -1.7242 1.4423 7.0604 23 1 -1.1424 1.8743 7.8613 24 6 -2.9326 2.0175 6.6919 25 7 -3.6414 1.4913 5.7156 26 14 -3.5521 3.5391 7.5807 27 1 -3.0480 4.7544 6.8920 28 1 -5.0371 3.5464 7.5735 29 1 -3.0640 3.5264 8.9831 30 1 -0.3633 0.5247 -0.8836 31 1 -0.3633 -1.0275 -0.0125 32 1 -0.3633 0.5029 0.8962 33 1 1.7232 1.9495 0.8962 34 1 3.1565 1.4125 -0.0126 35 1 1.7029 1.9571 -0.8836 36 1 3.2329 -2.4633 -1.2039 37 1 2.6889 -0.7671 3.1557 38 1 1.7121 0.6460 2.6898 39 1 1.8741 -0.5396 5.5460 40 1 0.8562 0.8695 5.1209 41 1 -1.2442 -2.2092 7.1098 42 1 0.3792 -2.5918 6.4129 43 1 -2.0201 0.2633 4.4269 44 1 -2.9213 -0.7340 5.6085 45 1 -4.4856 1.8934 5.4579 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032716607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:39:22 Heat of formation + Delta-G solvation = -7.707106 kcal Electronic energy + Delta-G solvation = -30704.180489 eV Core-core repulsion = 26531.966639 eV Total energy + Delta-G solvation = -4172.213850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.63385 -40.13080 -38.86980 -37.98909 -36.66808 -34.93683 -33.72234 -32.49539 -31.58376 -29.38226 -28.67763 -27.81474 -27.68780 -25.26975 -24.54273 -23.64388 -22.07362 -20.99246 -20.38512 -19.91712 -18.58588 -18.24261 -17.53542 -16.76163 -16.61829 -16.31252 -16.04350 -15.88990 -15.28782 -15.00402 -14.73617 -14.51082 -14.21830 -13.95792 -13.50229 -13.47827 -13.21915 -12.85883 -12.66330 -12.39957 -12.25352 -12.05761 -11.93439 -11.75786 -11.69073 -11.38274 -11.07947 -10.96677 -10.90523 -10.85670 -10.66546 -10.54214 -10.32932 -10.31794 -10.14168 -9.97699 -9.70321 -9.03206 -8.75257 -8.09899 -7.00513 -5.83848 -3.18698 1.40790 1.96903 2.72309 2.85029 2.88629 3.31997 3.37368 3.37808 3.40055 3.76012 4.31823 4.35631 4.51156 4.69087 4.73392 5.04697 5.09702 5.12210 5.21358 5.26447 5.30594 5.40248 5.48682 5.57152 5.58886 5.65756 5.70552 5.71155 5.81072 5.84794 6.04468 6.11508 6.14899 6.22316 6.34864 6.40782 6.52607 6.61169 6.85521 7.15347 7.35369 7.40285 7.64548 7.92529 7.98767 8.03204 8.44890 9.03197 9.64131 10.32714 11.28134 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.016992 B = 0.003357 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.448703 B = 8338.295506 C = 9209.767811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.119 3.881 3 C -0.146 4.146 4 C 0.539 3.461 5 O -0.468 6.468 6 N -0.681 5.681 7 C 0.709 3.291 8 O -0.543 6.543 9 N -0.596 5.596 10 C 0.137 3.863 11 C 0.508 3.492 12 O -0.542 6.542 13 N -0.604 5.604 14 C 0.079 3.921 15 C 0.141 3.859 16 H 0.107 0.893 17 C -0.153 4.153 18 C 0.100 3.900 19 H 0.113 0.887 20 C 0.176 3.824 21 N -0.597 5.597 22 C -0.233 4.233 23 H 0.081 0.919 24 C -0.004 4.004 25 N -0.919 5.919 26 Si 0.912 3.088 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.430 0.570 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.753 -2.328 -7.857 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.031 3.969 3 C -0.204 4.204 4 C 0.324 3.676 5 O -0.337 6.337 6 N -0.350 5.350 7 C 0.410 3.590 8 O -0.416 6.416 9 N -0.334 5.334 10 C 0.012 3.988 11 C 0.295 3.705 12 O -0.420 6.420 13 N -0.338 5.338 14 C -0.046 4.046 15 C 0.033 3.967 16 H 0.125 0.875 17 C -0.193 4.193 18 C -0.002 4.002 19 H 0.130 0.870 20 C 0.051 3.949 21 N -0.321 5.321 22 C -0.361 4.361 23 H 0.099 0.901 24 C -0.201 4.201 25 N -0.566 5.566 26 Si 0.742 3.258 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.272 0.728 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.340 -2.696 -8.432 15.187 hybrid contribution -0.213 0.504 0.177 0.576 sum 12.126 -2.192 -8.255 14.832 Atomic orbital electron populations 1.21981 0.89231 1.04854 1.03855 1.21573 0.98128 0.94008 0.83207 1.22001 1.01698 0.91975 1.04766 1.20833 0.76583 0.80385 0.89759 1.90816 1.56844 1.69345 1.16648 1.44393 1.51531 1.30509 1.08605 1.15726 0.79799 0.81986 0.81466 1.91010 1.49136 1.40940 1.60529 1.47200 1.52500 1.28215 1.05501 1.21113 0.98034 1.01593 0.78063 1.20465 0.86572 0.82320 0.81171 1.90672 1.56587 1.40589 1.54107 1.49214 1.27667 1.48284 1.08645 1.23345 0.95558 0.95438 0.90256 1.23143 0.88681 0.90547 0.94377 0.87483 1.24195 1.00698 0.97865 0.96537 1.24363 0.87005 0.97667 0.91208 0.86951 1.21898 0.92978 0.88967 0.91059 1.45242 1.18529 1.29869 1.38502 1.19045 1.02690 1.01391 1.12937 0.90126 1.24810 0.97303 0.99394 0.98615 1.69910 1.14924 1.41310 1.30412 0.86127 0.78042 0.82595 0.78993 1.21601 1.21679 1.20624 0.90412 0.90337 0.90245 0.89980 0.91468 0.89594 0.72804 0.86566 0.86652 0.92520 0.90880 0.89763 0.91570 0.93475 0.92658 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 7.60 37.16 0.28 -1.42 16 2 C 0.12 1.31 1.14 -132.09 -0.15 1.16 16 3 C -0.15 -1.19 8.76 37.16 0.33 -0.87 16 4 C 0.54 6.21 7.50 -10.40 -0.08 6.13 16 5 O -0.47 -6.20 18.02 5.59 0.10 -6.10 16 6 N -0.68 -7.48 5.71 -15.71 -0.09 -7.57 16 7 C 0.71 9.64 8.68 -88.02 -0.76 8.88 16 8 O -0.54 -9.04 17.71 5.34 0.09 -8.94 16 9 N -0.60 -7.38 2.00 -166.45 -0.33 -7.71 16 10 C 0.14 1.66 5.63 -5.19 -0.03 1.63 16 11 C 0.51 8.26 7.65 -10.98 -0.08 8.18 16 12 O -0.54 -10.43 14.97 5.56 0.08 -10.35 16 13 N -0.60 -10.01 2.95 -156.78 -0.46 -10.47 16 14 C 0.08 1.18 6.01 -1.69 -0.01 1.17 16 15 C 0.14 2.40 5.52 -62.59 -0.35 2.06 16 16 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 17 C -0.15 -2.45 6.81 -22.29 -0.15 -2.60 16 18 C 0.10 1.82 5.24 -62.54 -0.33 1.49 16 19 H 0.11 2.04 8.06 -51.93 -0.42 1.62 16 20 C 0.18 3.96 4.77 -1.68 -0.01 3.96 16 21 N -0.60 -13.42 3.03 -156.38 -0.47 -13.89 16 22 C -0.23 -5.86 10.37 -15.06 -0.16 -6.01 16 23 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 24 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 25 N -0.92 -25.62 10.56 55.49 0.59 -25.04 16 26 Si 0.91 20.82 29.55 -169.99 -5.02 15.79 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.13 7.39 -51.93 -0.38 0.74 16 32 H 0.08 1.03 8.02 -51.93 -0.42 0.62 16 33 H 0.08 0.61 7.50 -51.92 -0.39 0.22 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.43 3.68 8.96 -40.82 -0.37 3.31 16 37 H 0.12 1.28 8.03 -51.93 -0.42 0.86 16 38 H 0.12 1.12 7.41 -51.93 -0.38 0.74 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 1.22 7.68 -51.93 -0.40 0.82 16 44 H 0.06 1.40 7.46 -51.93 -0.39 1.01 16 45 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -33.13 368.77 -8.04 -41.17 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.49 Total: 4.01 kcal Atomic # 6 Polarization: 25.13 SS G_CDS: -1.59 Total: 23.54 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -0.77 Total: -64.68 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: 0.28 Total: -25.38 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.13 -8.04 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032716607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.461 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds