Wall clock time and date at job start Sat Apr 11 2020 04:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29935 * 125.37873 * 2 1 4 4 C 1.36063 * 108.47842 * 179.97438 * 3 2 1 5 5 C 1.47424 * 126.44754 * 180.02562 * 4 3 2 6 6 O 1.21617 * 119.99488 * 179.97438 * 5 4 3 7 7 N 1.34772 * 120.00245 * 359.97438 * 5 4 3 8 8 C 1.46497 * 120.00271 * 179.97438 * 7 5 4 9 9 C 1.53783 * 113.61553 * 254.13690 * 8 7 5 10 10 C 1.54050 * 86.98455 * 270.83400 * 9 8 7 11 11 C 1.52995 * 113.62349 * 220.01746 * 10 9 8 12 12 N 1.46893 * 109.47369 * 272.50116 * 11 10 9 13 13 C 1.46901 * 110.99895 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.47029 * 179.97438 * 13 12 11 15 15 O 1.21290 * 120.00302 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99958 * 179.97438 * 14 13 12 17 17 C 1.37099 * 120.00074 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00105 * 0.02562 * 17 16 14 19 19 C 1.38955 * 120.00094 * 180.02562 * 17 16 14 20 20 N 1.31407 * 119.99941 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99912 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46996 * 89.99806 * 21 19 17 23 23 H 1.48499 * 109.46820 * 209.99661 * 21 19 17 24 24 H 1.48497 * 109.47142 * 329.99873 * 21 19 17 25 25 C 1.53778 * 113.61780 * 156.52695 * 8 7 5 26 26 C 1.36093 * 107.10260 * 0.02562 * 4 3 2 27 27 O 1.34053 * 125.37889 * 180.26784 * 2 1 3 28 28 H 1.09003 * 109.46977 * 90.00112 * 1 2 3 29 29 H 1.08997 * 109.46958 * 209.99992 * 1 2 3 30 30 H 1.09001 * 109.47124 * 330.00369 * 1 2 3 31 31 H 0.97003 * 119.99725 * 359.97438 * 7 5 4 32 32 H 1.09005 * 112.84757 * 25.32815 * 8 7 5 33 33 H 1.08993 * 113.61443 * 25.42739 * 9 8 7 34 34 H 1.08995 * 113.61240 * 156.33360 * 9 8 7 35 35 H 1.09001 * 113.68670 * 89.12357 * 10 9 8 36 36 H 1.09001 * 109.46660 * 32.49982 * 11 10 9 37 37 H 1.09001 * 109.47240 * 152.49137 * 11 10 9 38 38 H 1.00897 * 111.00396 * 56.04399 * 12 11 10 39 39 H 1.08999 * 109.47623 * 299.99554 * 13 12 11 40 40 H 1.08999 * 109.47283 * 59.99911 * 13 12 11 41 41 H 0.96996 * 120.00254 * 0.02562 * 16 14 13 42 42 H 0.97000 * 120.00320 * 180.02562 * 20 19 17 43 43 H 1.08995 * 113.61703 * 203.66746 * 25 8 7 44 44 H 1.09001 * 113.61341 * 334.48313 * 25 8 7 45 45 H 1.08002 * 126.52257 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6639 0.0006 5 6 4.7439 1.5439 0.0013 6 8 5.8605 1.0618 0.0023 7 7 4.5879 2.8826 0.0009 8 6 5.7632 3.7571 0.0022 9 6 6.0258 4.4340 1.3578 10 6 5.1113 5.5751 0.8733 11 6 5.6117 6.9682 1.2603 12 7 5.1043 7.3179 2.5937 13 6 5.5662 8.6520 2.9995 14 6 5.0265 8.9755 4.3689 15 8 4.3263 8.1734 4.9498 16 7 5.3226 10.1556 4.9484 17 6 4.8320 10.4497 6.1944 18 1 4.2086 9.7355 6.7117 19 6 5.1369 11.6667 6.7917 20 7 4.6671 11.9483 7.9862 21 14 6.2147 12.9024 5.8967 22 1 5.3621 13.8007 5.0773 23 1 6.9725 13.7075 6.8880 24 1 7.1660 12.1812 5.0135 25 6 5.4866 5.1616 -0.5595 26 6 3.5660 -0.6971 0.0003 27 8 2.2832 -1.0930 -0.0051 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.6973 3.2670 -0.0002 32 1 6.6453 3.2813 -0.4264 33 1 5.6241 3.8813 2.2070 34 1 7.0631 4.7368 1.5009 35 1 4.0583 5.4228 1.1100 36 1 6.7016 6.9719 1.2738 37 1 5.2549 7.6974 0.5329 38 1 5.3677 6.6217 3.2749 39 1 6.6558 8.6671 3.0253 40 1 5.2094 9.3932 2.2843 41 1 5.8828 10.7970 4.4841 42 1 4.8796 12.7980 8.4030 43 1 6.3767 5.6629 -0.9396 44 1 4.6508 5.1956 -1.2583 45 1 4.4362 -1.3367 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282002272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:59 Heat of formation + Delta-G solvation = -23.345367 kcal Electronic energy + Delta-G solvation = -27301.790920 eV Core-core repulsion = 23128.898944 eV Total energy + Delta-G solvation = -4172.891976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.88111 -40.47250 -38.78333 -38.28358 -35.40248 -35.28398 -33.90948 -33.25492 -32.60650 -31.64114 -28.79683 -28.27195 -26.09553 -25.82652 -24.69566 -23.43544 -22.23436 -21.83933 -21.01460 -19.53581 -19.22970 -18.62734 -18.29597 -17.37760 -16.94117 -16.42892 -16.12063 -15.63802 -15.38995 -15.10996 -14.87909 -14.61811 -14.44419 -14.29426 -13.89832 -13.86833 -13.66427 -13.46966 -13.12263 -13.01602 -12.93771 -12.68583 -12.43644 -12.12808 -11.81324 -11.69955 -11.63853 -11.29297 -11.16064 -11.02518 -10.67060 -10.58116 -10.54007 -10.30033 -9.96043 -9.55741 -9.52315 -9.26440 -8.56564 -8.17486 -8.10120 -6.29624 -3.80949 0.66632 1.54611 2.10764 2.70331 2.92213 3.03468 3.07948 3.15850 3.40627 3.76372 4.05204 4.11771 4.24884 4.31874 4.33413 4.48757 4.63792 4.74732 4.78784 4.84432 4.94732 4.98900 5.16559 5.22972 5.24731 5.30766 5.41683 5.45881 5.51478 5.56601 5.62630 5.65338 5.70304 5.83303 5.87369 5.95380 5.96727 6.05876 6.36220 6.93242 7.15130 7.24020 7.59905 7.63047 7.81168 8.16347 8.61675 8.96691 9.44192 9.84935 10.83569 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.018579 B = 0.001718 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.731490 B =16295.867988 C =17234.852118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.200 3.800 3 N -0.462 5.462 4 C -0.073 4.073 5 C 0.606 3.394 6 O -0.537 6.537 7 N -0.692 5.692 8 C 0.119 3.881 9 C -0.150 4.150 10 C -0.106 4.106 11 C 0.069 3.931 12 N -0.668 5.668 13 C 0.048 3.952 14 C 0.450 3.550 15 O -0.564 6.564 16 N -0.591 5.591 17 C -0.305 4.305 18 H 0.119 0.881 19 C 0.040 3.960 20 N -0.882 5.882 21 Si 0.881 3.119 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.270 1.270 25 C -0.138 4.138 26 C 0.014 3.986 27 O -0.197 6.197 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.412 0.588 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.028 0.972 37 H 0.072 0.928 38 H 0.350 0.650 39 H 0.043 0.957 40 H 0.087 0.913 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.820 -22.090 -22.722 31.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.009 4.009 3 N -0.193 5.193 4 C -0.193 4.193 5 C 0.392 3.608 6 O -0.414 6.414 7 N -0.342 5.342 8 C 0.013 3.987 9 C -0.189 4.189 10 C -0.125 4.125 11 C -0.061 4.061 12 N -0.301 5.301 13 C -0.085 4.085 14 C 0.236 3.764 15 O -0.446 6.446 16 N -0.231 5.231 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.522 5.522 21 Si 0.707 3.293 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.177 4.177 26 C -0.060 4.060 27 O -0.083 6.083 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.248 0.752 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.170 0.830 39 H 0.061 0.939 40 H 0.105 0.895 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.115 0.885 44 H 0.093 0.907 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.359 -21.973 -22.368 31.444 hybrid contribution 1.723 0.565 -0.284 1.835 sum -0.637 -21.408 -22.652 31.174 Atomic orbital electron populations 1.20360 0.80667 1.05682 1.05049 1.26391 0.96743 0.78173 0.99620 1.70778 1.00616 1.30002 1.17879 1.21754 0.92147 0.93063 1.12299 1.16712 0.86163 0.81883 0.76057 1.90833 1.24307 1.75397 1.50852 1.45455 1.10319 1.04993 1.73443 1.21884 0.88912 0.89971 0.97887 1.23579 1.00590 0.97265 0.97437 1.22684 1.00767 0.93924 0.95105 1.21950 0.96416 0.95900 0.91793 1.60077 1.63299 1.03227 1.03475 1.21708 0.97449 0.92624 0.96755 1.19741 0.85717 0.83438 0.87535 1.90564 1.40487 1.48498 1.65061 1.42210 1.46947 1.16018 1.17934 1.19438 1.29272 1.03178 0.91439 0.86301 1.25044 0.97913 0.97330 0.95949 1.69622 1.44519 1.24012 1.14051 0.86658 0.80772 0.81969 0.79894 1.19606 1.20212 1.19553 1.23327 1.02726 0.94602 0.97016 1.25293 0.84886 0.95643 1.00223 1.84406 1.16707 1.37978 1.69204 0.88588 0.88993 0.87607 0.75223 0.87922 0.90763 0.89096 0.88061 0.95348 0.90988 0.83031 0.93864 0.89521 0.79700 0.91638 0.88536 0.90656 0.75256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 36.01 0.38 0.19 16 2 C 0.20 1.50 8.30 -13.08 -0.11 1.39 16 3 N -0.46 -4.51 11.06 -7.65 -0.08 -4.59 16 4 C -0.07 -0.74 6.99 -83.02 -0.58 -1.32 16 5 C 0.61 6.93 7.81 -12.52 -0.10 6.83 16 6 O -0.54 -7.38 16.51 5.26 0.09 -7.29 16 7 N -0.69 -6.82 5.26 -54.09 -0.28 -7.10 16 8 C 0.12 1.10 4.30 -67.12 -0.29 0.81 16 9 C -0.15 -1.48 7.45 -25.78 -0.19 -1.67 16 10 C -0.11 -1.04 3.79 -89.67 -0.34 -1.38 16 11 C 0.07 0.78 5.52 -3.83 -0.02 0.76 16 12 N -0.67 -10.42 6.13 -115.06 -0.70 -11.12 16 13 C 0.05 0.80 6.17 -4.97 -0.03 0.77 16 14 C 0.45 10.38 7.82 -10.99 -0.09 10.30 16 15 O -0.56 -15.43 15.78 5.55 0.09 -15.34 16 16 N -0.59 -14.28 5.09 -10.96 -0.06 -14.33 16 17 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 18 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 19 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 20 N -0.88 -25.97 13.96 55.50 0.77 -25.19 16 21 Si 0.88 19.51 27.74 -169.99 -4.71 14.79 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 25 C -0.14 -1.07 7.38 -25.92 -0.19 -1.26 16 26 C 0.01 0.11 11.95 29.96 0.36 0.47 16 27 O -0.20 -1.52 10.73 6.51 0.07 -1.45 16 28 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.11 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.41 3.75 8.43 -40.82 -0.34 3.40 16 32 H 0.10 1.01 7.50 -51.93 -0.39 0.63 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.84 7.90 -51.93 -0.41 0.43 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.03 0.30 7.85 -51.93 -0.41 -0.11 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.35 5.77 8.43 -39.29 -0.33 5.43 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.37 7.82 5.76 -40.82 -0.24 7.59 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.10 0.64 8.10 -51.93 -0.42 0.22 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.23 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 387.63 15.07 5.84 5.84 Total: -1.00 -36.39 387.63 -6.75 -43.14 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -6.32 Total: 14.62 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -1.45 Total: 8.02 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -0.36 Total: -62.34 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: 0.24 Total: -24.08 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.71 Total: 14.79 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.39 -6.75 -43.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282002272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.800 kcal (2) G-P(sol) polarization free energy of solvation -36.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds