Wall clock time and date at job start Sat Apr 11 2020 04:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33692 * 126.27318 * 2 1 4 4 C 1.30618 * 108.99808 * 180.27267 * 3 2 1 5 5 O 1.33659 * 109.15147 * 359.73237 * 4 3 2 6 6 C 1.35349 * 107.68810 * 359.97438 * 5 4 3 7 7 C 1.46723 * 126.64663 * 180.02562 * 6 5 4 8 8 O 1.21685 * 119.99923 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99725 * 0.02562 * 7 6 5 10 10 C 1.46502 * 119.99682 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46845 * 180.02562 * 10 9 7 12 12 H 1.08998 * 112.85316 * 43.80513 * 11 10 9 13 13 C 1.53777 * 113.61002 * 174.99937 * 11 10 9 14 14 C 1.53781 * 87.08336 * 89.11664 * 13 11 10 15 15 H 1.09002 * 113.61228 * 270.88201 * 14 13 11 16 16 N 1.46904 * 113.61796 * 140.06261 * 14 13 11 17 17 C 1.46893 * 110.99839 * 156.52932 * 16 14 13 18 18 C 1.50704 * 109.46843 * 179.97438 * 17 16 14 19 19 O 1.21295 * 120.00009 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99903 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99735 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00268 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99726 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00278 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99951 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47412 * 89.99884 * 25 23 21 27 27 H 1.48505 * 109.47186 * 210.00222 * 25 23 21 28 28 H 1.48501 * 109.47068 * 329.99647 * 25 23 21 29 29 C 1.53775 * 113.61584 * 272.49373 * 11 10 9 30 30 H 1.09007 * 109.47424 * 270.18418 * 1 2 3 31 31 H 1.09003 * 109.47903 * 30.18985 * 1 2 3 32 32 H 1.09007 * 109.47333 * 150.19372 * 1 2 3 33 33 H 1.07997 * 125.42284 * 179.75070 * 4 3 2 34 34 H 0.96998 * 120.00197 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.47007 * 59.99910 * 10 9 7 36 36 H 1.09002 * 109.46882 * 300.00018 * 10 9 7 37 37 H 1.08997 * 113.61941 * 334.56371 * 13 11 10 38 38 H 1.09009 * 113.68972 * 203.67450 * 13 11 10 39 39 H 1.00899 * 110.99751 * 280.48546 * 16 14 13 40 40 H 1.09000 * 109.47672 * 299.99901 * 17 16 14 41 41 H 1.09005 * 109.47280 * 60.00449 * 17 16 14 42 42 H 0.96989 * 119.99882 * 359.97438 * 20 18 17 43 43 H 0.96994 * 120.00070 * 179.97438 * 24 23 21 44 44 H 1.08993 * 113.61636 * 156.33278 * 29 11 10 45 45 H 1.09008 * 113.61006 * 25.43521 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6900 -0.0059 5 8 3.5889 -0.6459 -0.0039 6 6 2.3136 -1.0992 0.0041 7 6 1.8827 -2.5017 0.0094 8 8 0.6966 -2.7737 0.0160 9 7 2.8005 -3.4886 0.0069 10 6 2.3702 -4.8890 0.0116 11 6 3.5993 -5.8002 0.0081 12 1 4.3740 -5.4685 0.6994 13 6 3.2586 -7.2943 0.1355 14 6 3.1666 -7.3236 -1.3993 15 1 2.1727 -7.0910 -1.7816 16 7 3.7396 -8.5355 -2.0003 17 6 3.1621 -8.7888 -3.3269 18 6 3.7732 -10.0365 -3.9109 19 8 4.6074 -10.6541 -3.2833 20 7 3.3927 -10.4660 -5.1304 21 6 3.9491 -11.6007 -5.6619 22 1 4.6918 -12.1507 -5.1032 23 6 3.5565 -12.0438 -6.9189 24 7 2.6515 -11.3755 -7.5982 25 14 4.3139 -13.5903 -7.6428 26 1 3.5036 -14.7703 -7.2474 27 1 4.3408 -13.4820 -9.1236 28 1 5.6997 -13.7481 -7.1329 29 6 4.1245 -6.1207 -1.4011 30 1 -0.3634 0.0033 1.0277 31 1 -0.3635 0.8883 -0.5168 32 1 -0.3634 -0.8918 -0.5108 33 1 4.4042 1.3444 -0.0112 34 1 3.7459 -3.2718 0.0012 35 1 1.7680 -5.0870 -0.8751 36 1 1.7765 -5.0836 0.9048 37 1 2.3080 -7.4846 0.6337 38 1 4.0742 -7.8969 0.5355 39 1 4.7455 -8.4736 -2.0495 40 1 2.0840 -8.9206 -3.2348 41 1 3.3700 -7.9422 -3.9814 42 1 2.7254 -9.9723 -5.6321 43 1 2.3778 -11.6846 -8.4759 44 1 5.1776 -6.4010 -1.4213 45 1 3.8729 -5.3632 -2.1436 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488820249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:38 Heat of formation + Delta-G solvation = -28.676276 kcal Electronic energy + Delta-G solvation = -27413.459328 eV Core-core repulsion = 23240.336186 eV Total energy + Delta-G solvation = -4173.123142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.94062 -40.33185 -39.30522 -38.06475 -36.00190 -35.08686 -34.05817 -33.23005 -32.11092 -31.20511 -29.07178 -27.62191 -26.21485 -25.81815 -24.37633 -23.87498 -22.57291 -22.11416 -21.06827 -19.69988 -19.13691 -18.31360 -17.86124 -17.41612 -16.94788 -16.82275 -16.17258 -15.71146 -15.44499 -15.12333 -15.04591 -14.57284 -14.38718 -14.30083 -13.97688 -13.72187 -13.55650 -13.39692 -13.24716 -12.74753 -12.64973 -12.58850 -12.33133 -11.84558 -11.61219 -11.59727 -11.55341 -11.39094 -11.21065 -11.04327 -10.66945 -10.54797 -10.41191 -10.38645 -10.21238 -9.69551 -9.51206 -9.32144 -8.45117 -8.02478 -7.95252 -6.41850 -3.82774 0.32098 1.92447 1.94317 2.61888 2.70202 3.17805 3.26359 3.32095 3.53691 3.90719 4.09126 4.20100 4.23475 4.28526 4.33908 4.37180 4.56361 4.82016 4.92687 4.97780 5.01961 5.17031 5.24153 5.25837 5.27412 5.34556 5.40421 5.47344 5.52269 5.64030 5.69828 5.78282 5.80272 5.86478 5.94874 5.95618 6.07572 6.13330 6.29976 6.82978 7.09295 7.26100 7.55025 7.57014 7.66566 8.06232 8.61098 9.17655 9.54234 10.05618 10.75870 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.001630 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.141506 B =17170.318051 C =17653.407143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.083 3.917 3 N -0.494 5.494 4 C 0.205 3.795 5 O -0.192 6.192 6 C -0.119 4.119 7 C 0.608 3.392 8 O -0.511 6.511 9 N -0.715 5.715 10 C 0.136 3.864 11 C -0.128 4.128 12 H 0.085 0.915 13 C -0.115 4.115 14 C 0.067 3.933 15 H 0.096 0.904 16 N -0.657 5.657 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C -0.167 4.167 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.258 0.742 34 H 0.406 0.594 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.351 0.649 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.087 0.913 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 24.713 15.869 29.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 N -0.224 5.224 4 C -0.020 4.020 5 O -0.078 6.078 6 C -0.174 4.174 7 C 0.393 3.607 8 O -0.389 6.389 9 N -0.365 5.365 10 C 0.014 3.986 11 C -0.147 4.147 12 H 0.103 0.897 13 C -0.154 4.154 14 C -0.044 4.044 15 H 0.114 0.886 16 N -0.288 5.288 17 C -0.083 4.083 18 C 0.225 3.775 19 O -0.469 6.469 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.206 4.206 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.273 0.727 34 H 0.241 0.759 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.172 0.828 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.065 24.148 16.400 29.210 hybrid contribution 1.295 -0.085 -1.341 1.866 sum 0.229 24.063 15.059 28.388 Atomic orbital electron populations 1.20429 0.85163 1.04594 1.03865 1.22121 0.98511 0.86301 0.97178 1.70382 1.01371 1.31443 1.19155 1.28387 0.97683 0.79341 0.96596 1.84488 1.29596 1.24546 1.69189 1.22910 0.81496 0.96283 1.16706 1.16281 0.85789 0.81336 0.77258 1.90889 1.15671 1.81864 1.50444 1.45898 1.09907 1.06436 1.74295 1.21325 0.96192 0.77940 1.03192 1.22440 0.97181 0.96350 0.98732 0.89699 1.23055 1.02786 0.92874 0.96645 1.23114 0.98121 0.87762 0.95446 0.88554 1.60011 1.11323 1.35354 1.22105 1.21714 1.00110 0.96675 0.89793 1.19845 0.86639 0.87848 0.83126 1.90519 1.36151 1.59162 1.61035 1.41872 1.38117 1.25005 1.15041 1.19707 1.21180 1.01996 1.00057 0.87919 1.25269 0.96773 0.99474 0.96461 1.69612 1.30897 1.40032 1.13764 0.85851 0.79511 0.81106 0.77771 1.20372 1.20947 1.19442 1.23817 1.00585 0.99949 0.96269 0.89843 0.90308 0.88516 0.72668 0.75928 0.90486 0.90451 0.90947 0.88875 0.82845 0.89607 0.93887 0.77457 0.91868 0.89433 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 9.87 36.00 0.36 -0.31 16 2 C 0.08 0.78 7.16 -82.47 -0.59 0.19 16 3 N -0.49 -4.33 11.26 -10.89 -0.12 -4.45 16 4 C 0.21 1.14 13.21 52.25 0.69 1.83 16 5 O -0.19 -1.38 10.57 4.42 0.05 -1.33 16 6 C -0.12 -1.09 7.18 -36.84 -0.26 -1.36 16 7 C 0.61 6.05 7.79 -12.83 -0.10 5.95 16 8 O -0.51 -6.35 14.80 5.20 0.08 -6.28 16 9 N -0.71 -5.58 5.55 -61.60 -0.34 -5.92 16 10 C 0.14 1.09 5.35 -4.04 -0.02 1.07 16 11 C -0.13 -0.96 3.94 -89.81 -0.35 -1.32 16 12 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 13 C -0.11 -1.09 7.47 -25.92 -0.19 -1.28 16 14 C 0.07 0.75 3.82 -66.90 -0.26 0.50 16 15 H 0.10 1.07 7.45 -51.93 -0.39 0.68 16 16 N -0.66 -10.23 6.24 -107.13 -0.67 -10.90 16 17 C 0.05 0.87 6.02 -4.98 -0.03 0.84 16 18 C 0.44 10.39 7.82 -10.98 -0.09 10.31 16 19 O -0.58 -15.88 15.78 5.54 0.09 -15.79 16 20 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 21 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 25 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 29 C -0.17 -1.52 7.24 -25.92 -0.19 -1.70 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.86 6.48 -51.93 -0.34 0.52 16 33 H 0.26 0.01 8.06 -52.49 -0.42 -0.41 16 34 H 0.41 2.45 8.27 -40.82 -0.34 2.11 16 35 H 0.08 0.70 7.39 -51.93 -0.38 0.31 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 39 H 0.35 5.62 7.91 -39.29 -0.31 5.31 16 40 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.09 0.81 7.83 -51.93 -0.41 0.40 16 45 H 0.07 0.61 8.10 -51.92 -0.42 0.19 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -34.62 385.38 -6.97 -41.58 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -6.22 Total: 12.84 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -1.28 Total: 6.66 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.47 Total: -59.56 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.21 Total: -23.40 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.62 -6.97 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488820249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.908 kcal (2) G-P(sol) polarization free energy of solvation -34.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds