Wall clock time and date at job start Sat Apr 11 2020 04:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.49553 * 2 1 4 4 C 1.53095 * 109.47965 * 239.96726 * 2 1 3 5 5 C 1.53177 * 109.16508 * 297.62769 * 4 2 1 6 6 H 1.09006 * 109.61602 * 62.92635 * 5 4 2 7 7 C 1.52994 * 109.54616 * 183.15147 * 5 4 2 8 8 N 1.46497 * 109.47363 * 184.55984 * 7 5 4 9 9 C 1.34777 * 120.00092 * 180.02562 * 8 7 5 10 10 O 1.21371 * 120.00180 * 0.02562 * 9 8 7 11 11 C 1.49307 * 119.99817 * 179.97438 * 9 8 7 12 12 O 1.21400 * 120.00584 * 359.97438 * 11 9 8 13 13 N 1.34777 * 119.99817 * 179.97438 * 11 9 8 14 14 C 1.40292 * 120.00077 * 179.97438 * 13 11 9 15 15 C 1.40717 * 126.10191 * 0.02607 * 14 13 11 16 16 N 1.30877 * 108.37727 * 179.71993 * 15 14 13 17 17 N 1.40063 * 108.43662 * 0.40587 * 16 15 14 18 18 C 1.37295 * 126.05483 * 179.85776 * 17 16 15 19 19 H 1.07999 * 119.99882 * 179.68980 * 18 17 16 20 20 C 1.39009 * 119.99789 * 359.68474 * 18 17 16 21 21 N 1.31281 * 120.00568 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99504 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47117 * 90.00531 * 22 20 18 24 24 H 1.48499 * 109.47026 * 209.99964 * 22 20 18 25 25 H 1.48496 * 109.47474 * 329.99999 * 22 20 18 26 26 C 1.35793 * 126.09880 * 179.97438 * 14 13 11 27 27 C 1.53176 * 109.03757 * 303.02316 * 5 4 2 28 28 C 1.53087 * 109.16559 * 56.97449 * 27 5 4 29 29 O 1.42902 * 109.42032 * 302.39360 * 28 27 5 30 30 H 1.09003 * 109.46973 * 299.97753 * 1 2 3 31 31 H 1.08998 * 109.47254 * 59.97134 * 1 2 3 32 32 H 1.08995 * 109.47380 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.52444 * 177.72245 * 4 2 1 34 34 H 1.09000 * 109.51753 * 57.53415 * 4 2 1 35 35 H 1.09005 * 109.47183 * 64.55443 * 7 5 4 36 36 H 1.09006 * 109.47137 * 304.55917 * 7 5 4 37 37 H 0.97003 * 119.99753 * 359.97438 * 8 7 5 38 38 H 0.97003 * 120.00152 * 0.02562 * 13 11 9 39 39 H 1.08009 * 125.81060 * 359.97408 * 15 14 13 40 40 H 0.96991 * 120.00547 * 179.97438 * 21 20 18 41 41 H 1.07998 * 126.25263 * 0.02562 * 26 14 13 42 42 H 1.08996 * 109.52252 * 176.88718 * 27 5 4 43 43 H 1.09002 * 109.51910 * 297.07302 * 27 5 4 44 44 H 1.09006 * 109.47796 * 62.37982 * 28 27 5 45 45 H 1.09001 * 109.48143 * 182.40653 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0405 -0.7224 -1.2495 5 6 1.5757 -2.1814 -1.2121 6 1 0.4867 -2.2194 -1.2414 7 6 2.1466 -2.9316 -2.4171 8 7 1.6143 -4.2963 -2.4398 9 6 1.9818 -5.1468 -3.4186 10 8 2.7541 -4.7823 -4.2810 11 6 1.4396 -6.5378 -3.4413 12 8 0.6682 -6.9029 -2.5780 13 7 1.8067 -7.3881 -4.4204 14 6 1.2978 -8.6953 -4.4416 15 6 0.4008 -9.2510 -3.5105 16 7 0.1528 -10.4867 -3.8633 17 7 0.8849 -10.7717 -5.0229 18 6 0.8942 -11.9663 -5.6994 19 1 1.4941 -12.0775 -6.5906 20 6 0.1317 -13.0327 -5.2372 21 7 -0.5978 -12.8975 -4.1542 22 14 0.1450 -14.6584 -6.1574 23 1 1.2271 -15.5222 -5.6205 24 1 -1.1638 -15.3376 -5.9812 25 1 0.3822 -14.4078 -7.6017 26 6 1.5820 -9.6497 -5.3647 27 6 2.0763 -2.8323 0.0810 28 6 1.5644 -2.0284 1.2791 29 8 2.0065 -0.6742 1.1665 30 1 -0.3633 0.5135 0.8902 31 1 -0.3633 0.5143 -0.8897 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1297 -0.6876 -1.2709 34 1 1.6420 -0.2358 -2.1398 35 1 3.2335 -2.9667 -2.3416 36 1 1.8626 -2.4156 -3.3343 37 1 0.9979 -4.5879 -1.7499 38 1 2.4234 -7.0966 -5.1101 39 1 -0.0155 -8.7429 -2.6532 40 1 -1.1301 -13.6415 -3.8319 41 1 2.2400 -9.5408 -6.2142 42 1 1.7035 -3.8547 0.1422 43 1 3.1663 -2.8401 0.0865 44 1 0.4748 -2.0550 1.2958 45 1 1.9529 -2.4622 2.2006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324801708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:13 Heat of formation + Delta-G solvation = -39.429885 kcal Electronic energy + Delta-G solvation = -28204.783049 eV Core-core repulsion = 24031.193596 eV Total energy + Delta-G solvation = -4173.589453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.68797 -40.17096 -39.44348 -37.96704 -36.14599 -34.46332 -33.43399 -33.09735 -32.41026 -30.34659 -29.17506 -28.12146 -26.99695 -25.24348 -23.96071 -23.75914 -22.14888 -21.05267 -20.41643 -19.65532 -19.46980 -18.28720 -17.48201 -16.69860 -16.57590 -16.26469 -15.97089 -15.56206 -15.41501 -15.11841 -14.97861 -14.86960 -14.23318 -14.04575 -13.88336 -13.52001 -13.51090 -13.14449 -13.00820 -12.93798 -12.50494 -12.44817 -12.17596 -11.75725 -11.64139 -11.59871 -11.37818 -11.30739 -11.27147 -11.03335 -10.87823 -10.56963 -10.46905 -10.31542 -9.85665 -9.33808 -9.24714 -9.15951 -8.89665 -8.14983 -6.80112 -6.62185 -4.29588 1.62592 2.55785 2.91921 3.02662 3.07550 3.30513 3.47955 3.69478 3.73429 3.93568 4.19338 4.27380 4.28961 4.35058 4.52875 4.59421 4.68401 4.89705 4.94441 4.96458 4.96668 4.99695 5.04192 5.21138 5.23782 5.33923 5.43644 5.52188 5.53644 5.65587 5.69381 5.76687 5.94369 6.13939 6.18263 6.33794 6.73107 6.85650 6.86874 6.88901 7.14328 7.17311 7.73380 7.82880 8.07389 8.16299 8.46141 8.67339 9.29280 9.57824 10.33616 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.033248 B = 0.001827 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.953748 B =15324.592645 C =15849.187037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.087 3.913 3 H 0.103 0.897 4 C -0.141 4.141 5 C -0.104 4.104 6 H 0.084 0.916 7 C 0.124 3.876 8 N -0.704 5.704 9 C 0.515 3.485 10 O -0.528 6.528 11 C 0.483 3.517 12 O -0.524 6.524 13 N -0.583 5.583 14 C -0.070 4.070 15 C -0.026 4.026 16 N -0.261 5.261 17 N -0.138 5.138 18 C -0.321 4.321 19 H 0.118 0.882 20 C 0.046 3.954 21 N -0.767 5.767 22 Si 0.936 3.064 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.263 1.263 26 C -0.077 4.077 27 C -0.154 4.154 28 C 0.057 3.943 29 O -0.378 6.378 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.413 0.587 38 H 0.409 0.591 39 H 0.178 0.822 40 H 0.276 0.724 41 H 0.149 0.851 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.615 21.760 6.065 22.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.029 3.971 3 H 0.121 0.879 4 C -0.180 4.180 5 C -0.122 4.122 6 H 0.102 0.898 7 C 0.001 3.999 8 N -0.359 5.359 9 C 0.296 3.704 10 O -0.404 6.404 11 C 0.264 3.736 12 O -0.402 6.402 13 N -0.225 5.225 14 C -0.176 4.176 15 C -0.202 4.202 16 N -0.091 5.091 17 N 0.095 4.905 18 C -0.454 4.454 19 H 0.136 0.864 20 C -0.172 4.172 21 N -0.394 5.394 22 Si 0.760 3.240 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.187 1.187 26 C -0.229 4.229 27 C -0.192 4.192 28 C -0.020 4.020 29 O -0.297 6.297 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.249 0.751 38 H 0.244 0.756 39 H 0.194 0.806 40 H 0.087 0.913 41 H 0.167 0.833 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.939 20.653 6.618 21.886 hybrid contribution 0.361 -0.058 -0.940 1.009 sum 3.299 20.595 5.678 21.617 Atomic orbital electron populations 1.22481 0.96311 1.02988 1.02838 1.22156 0.93532 0.96392 0.84987 0.87946 1.22165 1.02296 0.94611 0.98888 1.21493 1.01291 0.95119 0.94335 0.89784 1.21470 0.99088 0.81075 0.98259 1.45713 1.48487 1.12524 1.29137 1.20297 0.81562 0.86640 0.81901 1.90737 1.34419 1.77954 1.37320 1.19642 0.84331 0.85834 0.83808 1.90651 1.35088 1.76798 1.37616 1.42148 1.43878 1.10108 1.26384 1.17255 1.11325 0.85075 1.03936 1.24143 1.01208 0.93377 1.01489 1.78263 1.17616 1.13477 0.99781 1.44567 1.23638 1.07079 1.15195 1.19929 1.29789 0.86064 1.09611 0.86418 1.25671 0.95049 1.00357 0.96078 1.70200 1.19772 1.31650 1.17752 0.85800 0.78439 0.80044 0.79734 1.19519 1.20035 1.18732 1.21309 1.08790 0.88781 1.03991 1.22299 1.02457 0.99994 0.94467 1.22593 0.98950 0.82092 0.98339 1.88002 1.73689 1.24856 1.43120 0.91806 0.91358 0.91680 0.90499 0.90373 0.90883 0.90886 0.75070 0.75584 0.80568 0.91337 0.83336 0.90368 0.90574 0.92675 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.05 8.65 37.16 0.32 -0.73 16 2 C 0.09 0.55 3.91 -26.68 -0.10 0.45 16 3 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.14 -0.84 4.93 -26.59 -0.13 -0.97 16 5 C -0.10 -0.70 2.00 -90.44 -0.18 -0.88 16 6 H 0.08 0.55 6.62 -51.93 -0.34 0.20 16 7 C 0.12 1.10 5.07 -4.05 -0.02 1.08 16 8 N -0.70 -7.93 5.31 -60.78 -0.32 -8.25 16 9 C 0.51 7.64 7.88 -11.65 -0.09 7.54 16 10 O -0.53 -8.64 16.48 5.48 0.09 -8.55 16 11 C 0.48 8.62 7.85 -11.65 -0.09 8.53 16 12 O -0.52 -10.39 13.62 5.45 0.07 -10.31 16 13 N -0.58 -10.93 5.45 -10.46 -0.06 -10.98 16 14 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 15 C -0.03 -0.68 10.84 -17.02 -0.18 -0.87 16 16 N -0.26 -7.44 10.39 30.81 0.32 -7.12 16 17 N -0.14 -3.74 3.73 -11.40 -0.04 -3.78 16 18 C -0.32 -8.38 10.25 -14.82 -0.15 -8.53 16 19 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 20 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 21 N -0.77 -21.07 11.81 55.50 0.66 -20.42 16 22 Si 0.94 18.61 29.55 -169.99 -5.02 13.59 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 26 C -0.08 -1.81 11.50 -16.38 -0.19 -2.00 16 27 C -0.15 -1.10 5.25 -26.60 -0.14 -1.24 16 28 C 0.06 0.40 6.51 37.20 0.24 0.64 16 29 O -0.38 -3.21 10.60 -35.23 -0.37 -3.59 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.38 4.98 -51.93 -0.26 0.12 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.41 4.29 7.14 -40.82 -0.29 4.00 16 38 H 0.41 6.63 8.29 -40.82 -0.34 6.29 16 39 H 0.18 4.39 5.92 -52.48 -0.31 4.08 16 40 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.15 2.91 8.06 -52.49 -0.42 2.49 16 42 H 0.08 0.56 7.28 -51.93 -0.38 0.18 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.35 6.34 -51.93 -0.33 0.02 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -32.82 369.36 -6.53 -39.35 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -6.02 Total: 12.58 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -1.40 Total: 1.92 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.55 Total: -50.55 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.21 Total: -22.45 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.82 -6.53 -39.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324801708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.081 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds