Wall clock time and date at job start Sat Apr 11 2020 04:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.49553 * 2 1 4 4 C 1.53095 * 109.47965 * 239.96726 * 2 1 3 5 5 C 1.53177 * 109.16508 * 297.62769 * 4 2 1 6 6 H 1.09006 * 109.61602 * 62.92635 * 5 4 2 7 7 C 1.52994 * 109.54616 * 183.15147 * 5 4 2 8 8 N 1.46497 * 109.47363 * 184.55984 * 7 5 4 9 9 C 1.34777 * 120.00092 * 180.02562 * 8 7 5 10 10 O 1.21371 * 120.00180 * 0.02562 * 9 8 7 11 11 C 1.49307 * 119.99817 * 179.97438 * 9 8 7 12 12 O 1.21400 * 120.00584 * 359.97438 * 11 9 8 13 13 N 1.34777 * 119.99817 * 179.97438 * 11 9 8 14 14 C 1.40292 * 120.00077 * 179.97438 * 13 11 9 15 15 C 1.40717 * 126.10191 * 0.02607 * 14 13 11 16 16 N 1.30877 * 108.37727 * 179.71993 * 15 14 13 17 17 N 1.40063 * 108.43662 * 0.40587 * 16 15 14 18 18 C 1.37295 * 126.05483 * 179.85776 * 17 16 15 19 19 H 1.07999 * 119.99882 * 179.68980 * 18 17 16 20 20 C 1.39009 * 119.99789 * 359.68474 * 18 17 16 21 21 N 1.31281 * 120.00568 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99504 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47117 * 90.00531 * 22 20 18 24 24 H 1.48499 * 109.47026 * 209.99964 * 22 20 18 25 25 H 1.48496 * 109.47474 * 329.99999 * 22 20 18 26 26 C 1.35793 * 126.09880 * 179.97438 * 14 13 11 27 27 C 1.53176 * 109.03757 * 303.02316 * 5 4 2 28 28 C 1.53087 * 109.16559 * 56.97449 * 27 5 4 29 29 O 1.42902 * 109.42032 * 302.39360 * 28 27 5 30 30 H 1.09003 * 109.46973 * 299.97753 * 1 2 3 31 31 H 1.08998 * 109.47254 * 59.97134 * 1 2 3 32 32 H 1.08995 * 109.47380 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.52444 * 177.72245 * 4 2 1 34 34 H 1.09000 * 109.51753 * 57.53415 * 4 2 1 35 35 H 1.09005 * 109.47183 * 64.55443 * 7 5 4 36 36 H 1.09006 * 109.47137 * 304.55917 * 7 5 4 37 37 H 0.97003 * 119.99753 * 359.97438 * 8 7 5 38 38 H 0.97003 * 120.00152 * 0.02562 * 13 11 9 39 39 H 1.08009 * 125.81060 * 359.97408 * 15 14 13 40 40 H 0.96991 * 120.00547 * 179.97438 * 21 20 18 41 41 H 1.07998 * 126.25263 * 0.02562 * 26 14 13 42 42 H 1.08996 * 109.52252 * 176.88718 * 27 5 4 43 43 H 1.09002 * 109.51910 * 297.07302 * 27 5 4 44 44 H 1.09006 * 109.47796 * 62.37982 * 28 27 5 45 45 H 1.09001 * 109.48143 * 182.40653 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0405 -0.7224 -1.2495 5 6 1.5757 -2.1814 -1.2121 6 1 0.4867 -2.2194 -1.2414 7 6 2.1466 -2.9316 -2.4171 8 7 1.6143 -4.2963 -2.4398 9 6 1.9818 -5.1468 -3.4186 10 8 2.7541 -4.7823 -4.2810 11 6 1.4396 -6.5378 -3.4413 12 8 0.6682 -6.9029 -2.5780 13 7 1.8067 -7.3881 -4.4204 14 6 1.2978 -8.6953 -4.4416 15 6 0.4008 -9.2510 -3.5105 16 7 0.1528 -10.4867 -3.8633 17 7 0.8849 -10.7717 -5.0229 18 6 0.8942 -11.9663 -5.6994 19 1 1.4941 -12.0775 -6.5906 20 6 0.1317 -13.0327 -5.2372 21 7 -0.5978 -12.8975 -4.1542 22 14 0.1450 -14.6584 -6.1574 23 1 1.2271 -15.5222 -5.6205 24 1 -1.1638 -15.3376 -5.9812 25 1 0.3822 -14.4078 -7.6017 26 6 1.5820 -9.6497 -5.3647 27 6 2.0763 -2.8323 0.0810 28 6 1.5644 -2.0284 1.2791 29 8 2.0065 -0.6742 1.1665 30 1 -0.3633 0.5135 0.8902 31 1 -0.3633 0.5143 -0.8897 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1297 -0.6876 -1.2709 34 1 1.6420 -0.2358 -2.1398 35 1 3.2335 -2.9667 -2.3416 36 1 1.8626 -2.4156 -3.3343 37 1 0.9979 -4.5879 -1.7499 38 1 2.4234 -7.0966 -5.1101 39 1 -0.0155 -8.7429 -2.6532 40 1 -1.1301 -13.6415 -3.8319 41 1 2.2400 -9.5408 -6.2142 42 1 1.7035 -3.8547 0.1422 43 1 3.1663 -2.8401 0.0865 44 1 0.4748 -2.0550 1.2958 45 1 1.9529 -2.4622 2.2006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324801708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:12 Heat of formation + Delta-G solvation = -63.523576 kcal Electronic energy + Delta-G solvation = -28205.827830 eV Core-core repulsion = 24031.193596 eV Total energy + Delta-G solvation = -4174.634234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.04781 -41.29284 -40.70447 -39.39874 -37.06013 -36.03984 -35.03636 -34.10980 -32.99048 -32.29984 -30.03869 -29.65594 -27.90109 -26.91326 -25.10279 -24.47341 -23.03675 -22.75154 -21.76001 -21.24580 -20.25021 -19.66827 -19.15721 -17.73202 -17.47180 -17.29324 -17.07886 -16.95724 -16.69016 -16.48701 -15.98072 -15.67487 -15.46418 -15.43207 -15.05086 -14.87817 -14.78747 -14.44449 -14.10924 -13.61727 -13.51706 -13.38470 -13.16493 -12.99758 -12.96674 -12.90944 -12.67603 -12.50543 -12.13886 -12.08872 -11.97356 -11.93932 -11.57088 -11.07165 -11.00364 -10.87630 -10.60473 -10.39133 -10.31674 -10.14524 -8.62726 -8.49229 -6.26942 0.27903 1.29247 1.29871 1.42176 1.58566 1.72292 2.03882 2.11785 2.53165 2.57846 2.92569 2.98478 3.07330 3.52003 3.57963 3.70292 3.76818 4.03318 4.19376 4.35003 4.39362 4.41246 4.45367 4.49309 4.52123 4.65459 4.70761 4.76097 4.85216 4.95372 4.97809 4.98913 5.02854 5.10860 5.16096 5.19720 5.21444 5.28885 5.30353 5.45416 5.89633 5.99076 6.24366 6.33992 6.47575 6.66916 6.79023 7.06582 7.40869 7.62509 8.49977 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.033248 B = 0.001827 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.953748 B =15324.592645 C =15849.187037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.082 3.918 3 H 0.112 0.888 4 C -0.137 4.137 5 C -0.096 4.096 6 H 0.092 0.908 7 C 0.124 3.876 8 N -0.686 5.686 9 C 0.524 3.476 10 O -0.541 6.541 11 C 0.485 3.515 12 O -0.543 6.543 13 N -0.583 5.583 14 C -0.057 4.057 15 C -0.048 4.048 16 N -0.308 5.308 17 N -0.163 5.163 18 C -0.353 4.353 19 H 0.142 0.858 20 C -0.005 4.005 21 N -0.821 5.821 22 Si 1.019 2.981 23 H -0.264 1.264 24 H -0.276 1.276 25 H -0.245 1.245 26 C -0.075 4.075 27 C -0.153 4.153 28 C 0.055 3.945 29 O -0.398 6.398 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.418 0.582 38 H 0.423 0.577 39 H 0.176 0.824 40 H 0.278 0.722 41 H 0.188 0.812 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.403 22.976 4.866 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.025 3.975 3 H 0.129 0.871 4 C -0.175 4.175 5 C -0.115 4.115 6 H 0.110 0.890 7 C 0.002 3.998 8 N -0.339 5.339 9 C 0.304 3.696 10 O -0.419 6.419 11 C 0.267 3.733 12 O -0.421 6.421 13 N -0.227 5.227 14 C -0.163 4.163 15 C -0.223 4.223 16 N -0.140 5.140 17 N 0.069 4.931 18 C -0.484 4.484 19 H 0.159 0.841 20 C -0.218 4.218 21 N -0.448 5.448 22 Si 0.838 3.162 23 H -0.189 1.189 24 H -0.201 1.201 25 H -0.168 1.168 26 C -0.226 4.226 27 C -0.191 4.191 28 C -0.021 4.021 29 O -0.318 6.318 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.256 0.744 38 H 0.261 0.739 39 H 0.193 0.807 40 H 0.088 0.912 41 H 0.205 0.795 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.743 21.933 5.430 22.903 hybrid contribution 0.155 -0.204 -0.476 0.541 sum 3.898 21.729 4.954 22.625 Atomic orbital electron populations 1.22461 0.95697 1.02920 1.03296 1.22310 0.94062 0.96701 0.84424 0.87070 1.22146 1.02167 0.93851 0.99384 1.21450 1.01588 0.95377 0.93042 0.89030 1.21665 0.99064 0.79541 0.99545 1.45732 1.47464 1.12955 1.27790 1.19636 0.81701 0.85498 0.82747 1.90744 1.35237 1.77774 1.38152 1.20298 0.83307 0.86951 0.82735 1.90643 1.35744 1.77544 1.38206 1.42092 1.44446 1.08738 1.27451 1.17295 1.09837 0.86656 1.02547 1.24257 1.02441 0.93297 1.02333 1.78158 1.19427 1.14932 1.01439 1.44843 1.24581 1.08366 1.15347 1.20654 1.30788 0.86345 1.10622 0.84096 1.26884 0.93921 1.04296 0.96652 1.70368 1.21337 1.33096 1.20048 0.84585 0.78268 0.74370 0.78957 1.18893 1.20121 1.16791 1.22008 1.08117 0.87749 1.04698 1.22276 1.01995 0.99987 0.94842 1.22640 0.99354 0.81690 0.98417 1.87977 1.74185 1.25412 1.44182 0.92120 0.90174 0.91968 0.90809 0.88876 0.90985 0.90235 0.74418 0.73919 0.80681 0.91231 0.79518 0.90534 0.91296 0.92019 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.72 8.65 71.98 0.62 -1.10 16 2 C 0.08 0.90 3.91 30.63 0.12 1.01 16 3 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.14 -1.33 4.93 30.69 0.15 -1.18 16 5 C -0.10 -1.10 2.00 -10.68 -0.02 -1.12 16 6 H 0.09 0.96 6.62 -2.38 -0.02 0.95 16 7 C 0.12 1.92 5.07 86.38 0.44 2.36 16 8 N -0.69 -14.17 5.31 -464.55 -2.47 -16.64 16 9 C 0.52 14.66 7.88 87.22 0.69 15.35 16 10 O -0.54 -16.61 16.48 -3.31 -0.05 -16.67 16 11 C 0.49 16.85 7.85 87.22 0.69 17.54 16 12 O -0.54 -21.40 13.62 -3.40 -0.05 -21.45 16 13 N -0.58 -21.20 5.45 -305.33 -1.66 -22.87 16 14 C -0.06 -2.61 6.90 37.82 0.26 -2.35 16 15 C -0.05 -2.52 10.84 85.44 0.93 -1.60 16 16 N -0.31 -18.16 10.39 -56.43 -0.59 -18.75 16 17 N -0.16 -8.95 3.73 -189.97 -0.71 -9.66 16 18 C -0.35 -18.42 10.25 84.02 0.86 -17.56 16 19 H 0.14 6.37 7.83 -2.91 -0.02 6.35 16 20 C -0.01 -0.28 5.50 84.96 0.47 0.19 16 21 N -0.82 -46.51 11.81 21.66 0.26 -46.26 16 22 Si 1.02 37.94 29.55 68.60 2.03 39.96 16 23 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 24 H -0.28 -10.17 7.11 99.48 0.71 -9.47 16 25 H -0.24 -8.28 7.11 99.48 0.71 -7.58 16 26 C -0.07 -3.45 11.50 83.41 0.96 -2.49 16 27 C -0.15 -1.97 5.25 30.68 0.16 -1.81 16 28 C 0.06 0.72 6.51 72.01 0.47 1.19 16 29 O -0.40 -6.29 10.60 -148.98 -1.58 -7.87 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.61 4.98 -2.39 -0.01 0.59 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.42 7.98 7.14 -92.71 -0.66 7.32 16 38 H 0.42 12.95 8.29 -92.71 -0.77 12.18 16 39 H 0.18 9.04 5.92 -2.91 -0.02 9.02 16 40 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 41 H 0.19 6.88 8.06 -2.91 -0.02 6.86 16 42 H 0.08 1.00 7.28 -2.39 -0.02 0.99 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 0.71 6.34 -2.38 -0.02 0.70 16 45 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -72.59 369.36 1.59 -71.00 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: -0.38 Total: 40.77 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 6.79 Total: 8.43 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -5.17 Total: -114.18 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -1.68 Total: -45.99 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.96 kcal Total: -72.59 1.59 -71.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324801708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.473 kcal (2) G-P(sol) polarization free energy of solvation -72.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds