Wall clock time and date at job start Sat Apr 11 2020 04:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21275 * 120.00167 * 180.02562 * 6 5 4 8 8 C 1.50694 * 119.99872 * 0.02817 * 6 5 4 9 9 C 1.50702 * 109.47143 * 179.97438 * 8 6 5 10 10 C 1.41383 * 128.00552 * 90.00192 * 9 8 6 11 11 N 1.30175 * 106.39442 * 179.97438 * 10 9 8 12 12 O 1.20926 * 111.60606 * 359.97438 * 11 10 9 13 13 C 1.34040 * 111.56477 * 359.76894 * 12 11 10 14 14 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 15 15 C 1.54914 * 104.82992 * 24.12623 * 14 5 4 16 16 H 1.09001 * 111.00161 * 204.91727 * 15 14 5 17 17 N 1.46897 * 111.00134 * 81.10808 * 15 14 5 18 18 C 1.46897 * 111.00392 * 86.45168 * 17 15 14 19 19 C 1.50698 * 109.47402 * 179.97438 * 18 17 15 20 20 O 1.21295 * 119.99780 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00060 * 179.97438 * 19 18 17 22 22 C 1.37097 * 119.99744 * 180.02562 * 21 19 18 23 23 H 1.08002 * 120.00626 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99797 * 180.02562 * 22 21 19 25 25 N 1.31413 * 120.00306 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00045 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47216 * 59.99600 * 26 24 22 28 28 H 1.48499 * 109.47084 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47014 * 299.99864 * 26 24 22 30 30 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 31 31 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 32 32 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 33 33 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 34 34 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 35 35 H 1.08997 * 109.47569 * 299.99781 * 8 6 5 36 36 H 1.09007 * 109.47441 * 59.99852 * 8 6 5 37 37 H 1.07997 * 126.80232 * 359.94412 * 10 9 8 38 38 H 1.08003 * 126.77983 * 180.28972 * 13 12 11 39 39 H 1.08999 * 110.36956 * 142.96999 * 14 5 4 40 40 H 1.09003 * 110.36599 * 265.28903 * 14 5 4 41 41 H 1.00895 * 111.00326 * 322.49413 * 17 15 14 42 42 H 1.09002 * 109.46988 * 299.99916 * 18 17 15 43 43 H 1.09001 * 109.46840 * 59.99457 * 18 17 15 44 44 H 0.97000 * 120.00291 * 0.02562 * 21 19 18 45 45 H 0.97002 * 120.00395 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9877 -2.3885 -1.4937 7 8 4.9329 -2.9679 -1.0021 8 6 3.6451 -2.6020 -2.9455 9 6 4.6234 -3.5729 -3.5550 10 6 4.5228 -4.9814 -3.6254 11 7 5.5947 -5.3962 -4.2366 12 8 6.3168 -4.4759 -4.5431 13 6 5.7995 -3.2976 -4.1680 14 6 3.4656 -1.2541 0.6849 15 6 2.0831 -0.7972 1.2139 16 1 2.1920 -0.1544 2.0874 17 7 1.2275 -1.9522 1.5169 18 6 1.4658 -2.4403 2.8818 19 6 0.5719 -3.6222 3.1560 20 8 -0.1885 -4.0192 2.2984 21 7 0.6182 -4.2386 4.3536 22 6 -0.1947 -5.3141 4.6027 23 1 -0.8724 -5.6672 3.8395 24 6 -0.1473 -5.9494 5.8376 25 7 0.6769 -5.5196 6.7665 26 14 -1.2553 -7.4144 6.1774 27 1 -0.9569 -8.4967 5.2055 28 1 -1.0140 -7.9081 7.5570 29 1 -2.6756 -7.0033 6.0397 30 1 -0.3633 -1.0272 0.0321 31 1 -0.3634 0.5414 0.8735 32 1 -0.3633 0.4858 -0.9056 33 1 2.3741 -0.1026 -1.9977 34 1 1.3121 -1.4741 -1.5791 35 1 2.6355 -3.0049 -3.0252 36 1 3.6996 -1.6510 -3.4754 37 1 3.7167 -5.5921 -3.2466 38 1 6.2352 -2.3215 -4.3223 39 1 3.7975 -2.1479 1.2131 40 1 4.1973 -0.4537 0.7952 41 1 1.3618 -2.6891 0.8409 42 1 2.5084 -2.7416 2.9831 43 1 1.2463 -1.6459 3.5952 44 1 1.2266 -3.9213 5.0392 45 1 0.7102 -5.9633 7.6285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484898607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:41:33 Heat of formation + Delta-G solvation = -0.264104 kcal Electronic energy + Delta-G solvation = -28776.345719 eV Core-core repulsion = 24604.454621 eV Total energy + Delta-G solvation = -4171.891097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.12769 -40.49899 -38.61105 -37.86598 -34.82719 -34.55447 -33.78534 -32.55286 -32.33949 -31.22622 -30.02491 -28.36499 -26.45906 -26.23668 -24.11135 -23.28854 -22.84746 -21.74229 -20.02765 -19.62428 -19.24954 -18.08323 -17.95264 -17.80350 -17.17584 -16.67666 -16.22044 -15.66039 -15.29564 -15.07526 -14.71823 -14.61130 -14.11043 -13.95806 -13.75567 -13.59059 -13.38495 -13.28306 -13.14333 -12.81975 -12.48900 -12.33389 -12.18766 -11.94534 -11.74820 -11.54947 -11.46846 -11.31281 -11.03046 -10.93341 -10.77924 -10.56326 -10.45146 -10.22589 -10.13186 -9.61946 -9.51408 -8.95228 -8.48920 -8.10626 -7.97685 -6.42841 -3.83846 1.27474 1.99835 2.41445 2.78798 3.05306 3.19412 3.25346 3.29523 3.88489 3.98399 4.04805 4.18774 4.24780 4.33840 4.42348 4.49997 4.64812 4.78855 4.86601 5.01414 5.03830 5.11366 5.21784 5.24849 5.29636 5.34434 5.41137 5.41888 5.52380 5.59334 5.66815 5.78186 5.80791 5.88591 5.96765 6.02713 6.06416 6.24353 6.52627 7.11264 7.27210 7.53091 7.53846 7.94700 8.04248 8.04784 8.59281 9.16242 9.52465 10.03474 10.74762 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.010841 B = 0.002643 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.167129 B =10590.208004 C =12348.738691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.091 4.091 3 H 0.085 0.915 4 C 0.099 3.901 5 N -0.616 5.616 6 C 0.528 3.472 7 O -0.532 6.532 8 C -0.058 4.058 9 C -0.185 4.185 10 C 0.007 3.993 11 N -0.365 5.365 12 O 0.097 5.903 13 C -0.047 4.047 14 C 0.072 3.928 15 C 0.076 3.924 16 H 0.102 0.898 17 N -0.649 5.649 18 C 0.048 3.952 19 C 0.441 3.559 20 O -0.584 6.584 21 N -0.562 5.562 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.190 0.810 38 H 0.214 0.786 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.351 0.649 42 H 0.044 0.956 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.870 14.805 -18.496 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.110 4.110 3 H 0.103 0.897 4 C -0.024 4.024 5 N -0.352 5.352 6 C 0.316 3.684 7 O -0.408 6.408 8 C -0.099 4.099 9 C -0.190 4.190 10 C -0.173 4.173 11 N -0.069 5.069 12 O 0.032 5.968 13 C -0.129 4.129 14 C -0.052 4.052 15 C -0.036 4.036 16 H 0.120 0.880 17 N -0.280 5.280 18 C -0.084 4.084 19 C 0.226 3.774 20 O -0.469 6.469 21 N -0.199 5.199 22 C -0.430 4.430 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.207 0.793 38 H 0.231 0.769 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.171 0.829 42 H 0.062 0.938 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.874 13.232 -18.830 24.019 hybrid contribution 0.243 -0.206 1.074 1.120 sum 7.117 13.025 -17.756 23.143 Atomic orbital electron populations 1.21573 0.92430 1.04076 1.00781 1.22286 0.97852 0.98071 0.92839 0.89688 1.22260 0.87568 0.94906 0.97624 1.48453 1.30593 1.44724 1.11381 1.20158 0.82140 0.78180 0.87935 1.90757 1.28729 1.47542 1.73746 1.19856 0.99060 0.98946 0.92009 1.20737 0.98401 0.94494 1.05344 1.24973 0.98297 0.93648 1.00341 1.73872 1.04334 1.12205 1.16496 1.84813 1.40481 1.11526 1.59947 1.25729 0.94605 0.92250 1.00283 1.23072 0.99166 1.01516 0.81475 1.22916 0.88684 0.94056 0.97920 0.88044 1.60124 1.54163 1.10227 1.03471 1.21729 0.97716 0.97815 0.91187 1.19751 0.87356 0.86235 0.84050 1.90517 1.42733 1.67654 1.45983 1.41850 1.37020 1.28413 1.12577 1.19645 1.17761 1.06191 0.99395 0.87983 1.25264 0.97804 0.99430 0.95380 1.69601 1.37135 1.41850 1.05674 0.85919 0.80097 0.80905 0.77314 1.19905 1.20954 1.19858 0.90204 0.92244 0.93567 0.91437 0.90632 0.87116 0.87507 0.79296 0.76928 0.90278 0.91085 0.82867 0.93807 0.89372 0.77455 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 8.82 37.15 0.33 -0.86 16 2 C -0.09 -0.73 3.48 -88.65 -0.31 -1.04 16 3 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.10 0.74 6.03 -3.07 -0.02 0.72 16 5 N -0.62 -6.27 3.25 -170.52 -0.55 -6.83 16 6 C 0.53 6.14 7.84 -10.99 -0.09 6.06 16 7 O -0.53 -8.67 16.29 5.56 0.09 -8.58 16 8 C -0.06 -0.45 5.48 -29.04 -0.16 -0.61 16 9 C -0.19 -1.80 4.82 -104.42 -0.50 -2.31 16 10 C 0.01 0.07 12.16 -17.06 -0.21 -0.13 16 11 N -0.37 -4.70 12.07 30.36 0.37 -4.33 16 12 O 0.10 1.07 11.20 17.18 0.19 1.26 16 13 C -0.05 -0.40 12.26 29.74 0.36 -0.03 16 14 C 0.07 0.78 6.35 -2.53 -0.02 0.77 16 15 C 0.08 0.79 3.09 -65.43 -0.20 0.59 16 16 H 0.10 0.95 7.92 -51.93 -0.41 0.54 16 17 N -0.65 -9.36 4.51 -105.58 -0.48 -9.84 16 18 C 0.05 0.80 6.02 -4.98 -0.03 0.77 16 19 C 0.44 10.19 7.82 -10.99 -0.09 10.11 16 20 O -0.58 -15.51 15.78 5.54 0.09 -15.42 16 21 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 22 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 23 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 26 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 30 H 0.08 0.95 7.21 -51.93 -0.37 0.57 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.57 7.82 -51.93 -0.41 0.16 16 35 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.19 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.21 0.89 8.06 -52.48 -0.42 0.46 16 39 H 0.08 1.07 7.52 -51.93 -0.39 0.68 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.35 5.66 8.12 -39.29 -0.32 5.34 16 42 H 0.04 0.69 7.65 -51.93 -0.40 0.29 16 43 H 0.09 1.33 8.09 -51.93 -0.42 0.91 16 44 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 382.46 15.07 5.76 5.76 Total: -1.00 -35.39 382.46 -6.41 -41.80 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -6.36 Total: 12.12 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -1.16 Total: 6.04 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.00 Total: -59.10 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.37 Total: -22.74 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.39 -6.41 -41.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484898607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.538 kcal (2) G-P(sol) polarization free energy of solvation -35.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds