Wall clock time and date at job start Sat Apr 11 2020 04:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.88912 * 2 1 4 4 C 1.55122 * 110.90729 * 124.09653 * 2 1 3 5 5 N 1.47426 * 104.72747 * 155.27184 * 4 2 1 6 6 C 1.34774 * 125.64955 * 155.81509 * 5 4 2 7 7 O 1.21277 * 120.00068 * 359.72242 * 6 5 4 8 8 C 1.50697 * 119.99917 * 179.72198 * 6 5 4 9 9 C 1.52999 * 109.47338 * 180.02562 * 8 6 5 10 10 O 1.42902 * 109.47267 * 180.02562 * 9 8 6 11 11 C 1.35955 * 116.99637 * 180.02562 * 10 9 8 12 12 C 1.38663 * 120.06582 * 359.97438 * 11 10 9 13 13 C 1.38177 * 119.96783 * 180.27971 * 12 11 10 14 14 C 1.38261 * 120.09810 * 359.46548 * 13 12 11 15 15 C 1.38263 * 120.12239 * 0.55282 * 14 13 12 16 16 C 1.38334 * 120.03082 * 359.70601 * 15 14 13 17 17 F 1.35102 * 120.04706 * 179.97438 * 16 15 14 18 18 C 1.47020 * 108.69991 * 335.55587 * 5 4 2 19 19 C 1.54330 * 107.27122 * 1.28536 * 18 5 4 20 20 H 1.08997 * 110.71917 * 140.55879 * 19 18 5 21 21 N 1.46499 * 110.71759 * 263.65191 * 19 18 5 22 22 C 1.36939 * 120.00236 * 273.54759 * 21 19 18 23 23 H 1.08009 * 120.00028 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00662 * 179.97438 * 22 21 19 25 25 N 1.31619 * 119.99363 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00350 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47504 * 60.00091 * 26 24 22 28 28 H 1.48498 * 109.46958 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.46903 * 300.00164 * 26 24 22 30 30 H 1.08991 * 109.47258 * 183.87894 * 1 2 3 31 31 H 1.08996 * 109.47019 * 303.88138 * 1 2 3 32 32 H 1.09006 * 109.46945 * 63.87988 * 1 2 3 33 33 H 1.09002 * 110.49505 * 36.43293 * 4 2 1 34 34 H 1.08998 * 110.34719 * 274.04188 * 4 2 1 35 35 H 1.09003 * 109.47525 * 59.99809 * 8 6 5 36 36 H 1.09000 * 109.47034 * 300.00478 * 8 6 5 37 37 H 1.09003 * 109.47095 * 59.99390 * 9 8 6 38 38 H 1.09003 * 109.46737 * 299.99693 * 9 8 6 39 39 H 1.08002 * 120.01219 * 359.97438 * 12 11 10 40 40 H 1.08003 * 119.95063 * 179.72337 * 13 12 11 41 41 H 1.08001 * 119.94219 * 180.30314 * 14 13 12 42 42 H 1.07998 * 119.98539 * 179.72390 * 15 14 13 43 43 H 1.08997 * 109.88187 * 120.69863 * 18 5 4 44 44 H 1.08994 * 109.88414 * 241.86658 * 18 5 4 45 45 H 0.96998 * 120.00176 * 93.54469 * 21 19 18 46 46 H 0.96996 * 119.99861 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0836 -0.8123 1.2000 5 7 3.4272 -1.2434 0.7728 6 6 4.4477 -1.5623 1.5934 7 8 4.3008 -1.5011 2.7957 8 6 5.7712 -1.9948 1.0170 9 6 6.7487 -2.2968 2.1545 10 8 8.0039 -2.7063 1.6079 11 6 8.9905 -3.0146 2.4910 12 6 8.7555 -2.9242 3.8546 13 6 9.7615 -3.2325 4.7503 14 6 10.9991 -3.6416 4.2892 15 6 11.2378 -3.7327 2.9304 16 6 10.2361 -3.4202 2.0289 17 9 10.4692 -3.5087 0.7011 18 6 3.4675 -1.2739 -0.6965 19 6 2.0861 -0.8074 -1.2025 20 1 2.1922 -0.1692 -2.0797 21 7 1.2283 -1.9568 -1.5009 22 6 1.2847 -2.5519 -2.7330 23 1 1.9615 -2.1735 -3.4850 24 6 0.4723 -3.6413 -3.0157 25 7 -0.3521 -4.1027 -2.0992 26 14 0.5488 -4.4524 -4.6966 27 1 1.9237 -4.9576 -4.9403 28 1 -0.4107 -5.5848 -4.7439 29 1 0.1938 -3.4593 -5.7420 30 1 -0.3633 -1.0252 0.0695 31 1 -0.3633 0.5729 0.8531 32 1 -0.3633 0.4525 -0.9228 33 1 1.4524 -1.6787 1.3980 34 1 2.1516 -0.1810 2.0859 35 1 6.1741 -1.1967 0.3934 36 1 5.6289 -2.8909 0.4130 37 1 6.3455 -3.0950 2.7778 38 1 6.8910 -1.4008 2.7588 39 1 7.7881 -2.6084 4.2163 40 1 9.5795 -3.1577 5.8122 41 1 11.7820 -3.8866 4.9916 42 1 12.2067 -4.0482 2.5726 43 1 4.2426 -0.5994 -1.0601 44 1 3.6650 -2.2890 -1.0409 45 1 0.6202 -2.2965 -0.8258 46 1 -0.9201 -4.8637 -2.2967 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733856494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:08 Heat of formation + Delta-G solvation = -78.431925 kcal Electronic energy + Delta-G solvation = -28355.685984 eV Core-core repulsion = 24160.485314 eV Total energy + Delta-G solvation = -4195.200670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.95634 -40.38707 -39.80603 -37.98558 -37.48130 -34.00597 -32.74405 -31.97324 -31.00002 -30.53040 -29.76665 -27.78916 -26.59112 -24.57350 -23.86913 -22.82109 -22.44435 -21.75932 -19.37298 -19.11601 -18.52412 -17.61448 -17.37073 -16.84734 -16.73747 -16.43989 -15.91852 -15.55956 -15.27604 -14.91792 -14.66798 -14.62815 -14.27976 -14.13731 -13.80282 -13.32939 -13.09561 -13.01630 -12.97763 -12.57384 -12.33773 -12.17061 -12.07822 -11.93150 -11.80015 -11.61106 -11.30321 -11.16488 -10.98862 -10.94874 -10.80586 -10.51533 -10.32626 -9.99155 -9.80154 -9.68010 -9.26807 -9.05130 -8.48554 -8.34977 -7.11702 -5.87889 -3.18338 0.80540 0.94870 2.57725 2.74627 3.26785 3.37919 3.41339 3.43244 3.43893 3.97053 4.38886 4.48444 4.49444 4.60773 4.76259 4.78255 4.85185 4.89848 5.04694 5.12020 5.15707 5.27322 5.29755 5.46531 5.56689 5.59461 5.62223 5.68855 5.72738 5.73112 5.85847 5.87614 5.89912 6.06091 6.12910 6.20913 6.28856 6.31643 6.34931 6.46728 6.53639 6.70045 6.87457 7.03368 7.59661 7.76543 8.26843 8.30348 9.41940 9.96035 10.30700 11.34068 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.013231 B = 0.002378 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.669965 B =11773.928162 C =13245.981200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.079 0.921 4 C 0.115 3.885 5 N -0.603 5.603 6 C 0.533 3.467 7 O -0.559 6.559 8 C -0.136 4.136 9 C 0.076 3.924 10 O -0.308 6.308 11 C 0.105 3.895 12 C -0.182 4.182 13 C -0.089 4.089 14 C -0.133 4.133 15 C -0.118 4.118 16 C 0.066 3.934 17 F -0.132 7.132 18 C 0.067 3.933 19 C 0.172 3.828 20 H 0.071 0.929 21 N -0.712 5.712 22 C -0.249 4.249 23 H 0.072 0.928 24 C -0.008 4.008 25 N -0.929 5.929 26 Si 0.908 3.092 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.285 1.285 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.142 0.858 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.387 0.613 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.119 5.718 11.777 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.098 0.902 4 C -0.007 4.007 5 N -0.335 5.335 6 C 0.321 3.679 7 O -0.439 6.439 8 C -0.176 4.176 9 C 0.001 3.999 10 O -0.222 6.222 11 C 0.058 3.942 12 C -0.201 4.201 13 C -0.107 4.107 14 C -0.152 4.152 15 C -0.137 4.137 16 C 0.046 3.954 17 F -0.111 7.111 18 C -0.059 4.059 19 C 0.060 3.940 20 H 0.089 0.911 21 N -0.353 5.353 22 C -0.380 4.380 23 H 0.090 0.910 24 C -0.204 4.204 25 N -0.576 5.576 26 Si 0.738 3.262 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.212 1.212 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.159 0.841 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.159 0.841 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.223 0.777 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 18.081 5.643 11.985 22.414 hybrid contribution -0.192 -0.719 -0.883 1.155 sum 17.889 4.923 11.102 21.622 Atomic orbital electron populations 1.21548 0.93328 1.03000 1.01036 1.22655 0.97015 0.98425 0.95270 0.90239 1.22333 0.82622 0.98435 0.97338 1.48402 1.11833 1.65206 1.08037 1.19755 0.84668 0.77396 0.86051 1.90677 1.83644 1.55019 1.14578 1.21414 0.92184 1.04962 0.99031 1.22523 0.80643 1.00719 0.95994 1.86066 1.20948 1.81344 1.33835 1.19022 0.88073 0.97631 0.89499 1.21318 1.01755 1.05906 0.91111 1.21053 0.92539 0.97203 0.99942 1.20935 0.97752 1.01957 0.94523 1.21028 0.98532 1.01098 0.93051 1.17035 0.92539 1.07484 0.78369 1.91513 1.94763 1.94213 1.30596 1.23373 1.01772 1.02469 0.78246 1.21201 0.88259 0.89903 0.94687 0.91123 1.42445 1.45431 1.32790 1.14635 1.19176 1.18740 1.09552 0.90484 0.91016 1.24755 0.98890 0.98832 0.97960 1.69643 1.27263 1.27435 1.33308 0.86268 0.77268 0.78884 0.83733 1.21173 1.21700 1.21169 0.91193 0.93632 0.92040 0.91079 0.91207 0.87816 0.87459 0.90744 0.90871 0.84056 0.84988 0.84894 0.84126 0.92466 0.90212 0.77737 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.85 37.16 0.33 -1.66 16 2 C -0.11 -1.70 3.53 -88.36 -0.31 -2.01 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.11 1.82 6.36 -2.41 -0.02 1.81 16 5 N -0.60 -9.66 3.32 -170.39 -0.57 -10.23 16 6 C 0.53 8.40 7.85 -10.99 -0.09 8.32 16 7 O -0.56 -10.16 16.24 5.56 0.09 -10.07 16 8 C -0.14 -1.73 5.26 -27.88 -0.15 -1.88 16 9 C 0.08 0.93 4.03 37.16 0.15 1.08 16 10 O -0.31 -4.06 10.00 -19.60 -0.20 -4.26 16 11 C 0.10 1.25 6.69 -39.18 -0.26 0.99 16 12 C -0.18 -1.80 9.04 -39.45 -0.36 -2.15 16 13 C -0.09 -0.70 10.04 -39.60 -0.40 -1.10 16 14 C -0.13 -0.97 10.04 -39.56 -0.40 -1.37 16 15 C -0.12 -1.02 10.02 -39.54 -0.40 -1.42 16 16 C 0.07 0.76 7.31 -39.30 -0.29 0.47 16 17 F -0.13 -1.74 17.11 2.25 0.04 -1.70 16 18 C 0.07 1.08 6.23 -3.06 -0.02 1.06 16 19 C 0.17 3.02 3.36 -66.09 -0.22 2.80 16 20 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 21 N -0.71 -16.07 4.62 -51.65 -0.24 -16.31 16 22 C -0.25 -6.36 9.98 -15.06 -0.15 -6.51 16 23 H 0.07 1.77 7.83 -52.48 -0.41 1.35 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 25 N -0.93 -26.76 13.06 55.49 0.72 -26.03 16 26 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 30 H 0.07 1.24 6.39 -51.93 -0.33 0.90 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.25 7.99 -51.93 -0.41 0.83 16 34 H 0.07 1.06 8.03 -51.93 -0.42 0.64 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.07 0.91 7.62 -51.93 -0.40 0.51 16 38 H 0.07 0.84 7.62 -51.93 -0.40 0.44 16 39 H 0.14 1.28 6.30 -52.49 -0.33 0.95 16 40 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 41 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.44 8.04 -51.93 -0.42 1.03 16 45 H 0.39 9.43 6.11 -40.82 -0.25 9.18 16 46 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -30.75 384.70 -8.77 -39.52 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.73 Total: 8.70 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -2.67 Total: -1.87 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.08 Total: -52.57 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.11 Total: -14.32 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.75 -8.77 -39.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733856494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.912 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds