Wall clock time and date at job start Sat Apr 11 2020 04:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.88912 * 2 1 4 4 C 1.55122 * 110.90729 * 124.09653 * 2 1 3 5 5 N 1.47426 * 104.72747 * 155.27184 * 4 2 1 6 6 C 1.34774 * 125.64955 * 155.81509 * 5 4 2 7 7 O 1.21277 * 120.00068 * 359.72242 * 6 5 4 8 8 C 1.50697 * 119.99917 * 179.72198 * 6 5 4 9 9 C 1.52999 * 109.47338 * 180.02562 * 8 6 5 10 10 O 1.42902 * 109.47267 * 180.02562 * 9 8 6 11 11 C 1.35955 * 116.99637 * 180.02562 * 10 9 8 12 12 C 1.38663 * 120.06582 * 359.97438 * 11 10 9 13 13 C 1.38177 * 119.96783 * 180.27971 * 12 11 10 14 14 C 1.38261 * 120.09810 * 359.46548 * 13 12 11 15 15 C 1.38263 * 120.12239 * 0.55282 * 14 13 12 16 16 C 1.38334 * 120.03082 * 359.70601 * 15 14 13 17 17 F 1.35102 * 120.04706 * 179.97438 * 16 15 14 18 18 C 1.47020 * 108.69991 * 335.55587 * 5 4 2 19 19 C 1.54330 * 107.27122 * 1.28536 * 18 5 4 20 20 H 1.08997 * 110.71917 * 140.55879 * 19 18 5 21 21 N 1.46499 * 110.71759 * 263.65191 * 19 18 5 22 22 C 1.36939 * 120.00236 * 273.54759 * 21 19 18 23 23 H 1.08009 * 120.00028 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00662 * 179.97438 * 22 21 19 25 25 N 1.31619 * 119.99363 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00350 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47504 * 60.00091 * 26 24 22 28 28 H 1.48498 * 109.46958 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.46903 * 300.00164 * 26 24 22 30 30 H 1.08991 * 109.47258 * 183.87894 * 1 2 3 31 31 H 1.08996 * 109.47019 * 303.88138 * 1 2 3 32 32 H 1.09006 * 109.46945 * 63.87988 * 1 2 3 33 33 H 1.09002 * 110.49505 * 36.43293 * 4 2 1 34 34 H 1.08998 * 110.34719 * 274.04188 * 4 2 1 35 35 H 1.09003 * 109.47525 * 59.99809 * 8 6 5 36 36 H 1.09000 * 109.47034 * 300.00478 * 8 6 5 37 37 H 1.09003 * 109.47095 * 59.99390 * 9 8 6 38 38 H 1.09003 * 109.46737 * 299.99693 * 9 8 6 39 39 H 1.08002 * 120.01219 * 359.97438 * 12 11 10 40 40 H 1.08003 * 119.95063 * 179.72337 * 13 12 11 41 41 H 1.08001 * 119.94219 * 180.30314 * 14 13 12 42 42 H 1.07998 * 119.98539 * 179.72390 * 15 14 13 43 43 H 1.08997 * 109.88187 * 120.69863 * 18 5 4 44 44 H 1.08994 * 109.88414 * 241.86658 * 18 5 4 45 45 H 0.96998 * 120.00176 * 93.54469 * 21 19 18 46 46 H 0.96996 * 119.99861 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0836 -0.8123 1.2000 5 7 3.4272 -1.2434 0.7728 6 6 4.4477 -1.5623 1.5934 7 8 4.3008 -1.5011 2.7957 8 6 5.7712 -1.9948 1.0170 9 6 6.7487 -2.2968 2.1545 10 8 8.0039 -2.7063 1.6079 11 6 8.9905 -3.0146 2.4910 12 6 8.7555 -2.9242 3.8546 13 6 9.7615 -3.2325 4.7503 14 6 10.9991 -3.6416 4.2892 15 6 11.2378 -3.7327 2.9304 16 6 10.2361 -3.4202 2.0289 17 9 10.4692 -3.5087 0.7011 18 6 3.4675 -1.2739 -0.6965 19 6 2.0861 -0.8074 -1.2025 20 1 2.1922 -0.1692 -2.0797 21 7 1.2283 -1.9568 -1.5009 22 6 1.2847 -2.5519 -2.7330 23 1 1.9615 -2.1735 -3.4850 24 6 0.4723 -3.6413 -3.0157 25 7 -0.3521 -4.1027 -2.0992 26 14 0.5488 -4.4524 -4.6966 27 1 1.9237 -4.9576 -4.9403 28 1 -0.4107 -5.5848 -4.7439 29 1 0.1938 -3.4593 -5.7420 30 1 -0.3633 -1.0252 0.0695 31 1 -0.3633 0.5729 0.8531 32 1 -0.3633 0.4525 -0.9228 33 1 1.4524 -1.6787 1.3980 34 1 2.1516 -0.1810 2.0859 35 1 6.1741 -1.1967 0.3934 36 1 5.6289 -2.8909 0.4130 37 1 6.3455 -3.0950 2.7778 38 1 6.8910 -1.4008 2.7588 39 1 7.7881 -2.6084 4.2163 40 1 9.5795 -3.1577 5.8122 41 1 11.7820 -3.8866 4.9916 42 1 12.2067 -4.0482 2.5726 43 1 4.2426 -0.5994 -1.0601 44 1 3.6650 -2.2890 -1.0409 45 1 0.6202 -2.2965 -0.8258 46 1 -0.9201 -4.8637 -2.2967 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733856494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:07 Heat of formation + Delta-G solvation = -96.084664 kcal Electronic energy + Delta-G solvation = -28356.451464 eV Core-core repulsion = 24160.485314 eV Total energy + Delta-G solvation = -4195.966150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.84777 -41.41440 -40.89273 -39.17948 -38.42550 -35.71313 -34.11055 -33.13942 -32.18393 -31.68805 -30.56094 -29.33030 -27.77657 -25.84375 -25.45298 -23.70012 -23.44633 -22.81386 -20.73067 -20.24710 -19.60359 -19.28434 -18.33657 -17.75570 -17.73270 -17.52660 -17.19848 -16.69717 -16.30515 -16.19565 -15.91226 -15.68698 -15.41431 -15.38646 -14.97159 -14.67108 -14.50927 -14.30415 -13.86794 -13.77220 -13.47491 -13.33437 -13.09847 -13.01323 -12.90940 -12.86299 -12.75382 -12.57348 -12.32406 -12.18037 -12.07944 -11.96731 -11.89566 -11.46060 -11.37700 -11.11852 -10.90769 -9.97072 -9.68761 -9.26909 -9.00896 -7.92294 -5.20246 0.10354 0.23588 1.47340 1.50146 1.51363 1.57025 1.59597 2.29893 2.57751 2.58388 3.20241 3.39424 3.40570 3.57137 3.76255 3.79997 3.86261 3.89599 3.93129 3.98732 4.09254 4.15889 4.29707 4.32333 4.42854 4.47397 4.57147 4.62212 4.64977 4.69028 4.73194 4.88103 4.96417 4.98096 5.01262 5.07895 5.19741 5.24092 5.24599 5.33699 5.41217 5.54387 5.60025 5.67408 6.20062 6.29389 6.48574 7.00207 7.37072 8.11877 8.34031 9.30766 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.013231 B = 0.002378 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.669965 B =11773.928162 C =13245.981200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 H 0.112 0.888 4 C 0.114 3.886 5 N -0.606 5.606 6 C 0.531 3.469 7 O -0.585 6.585 8 C -0.129 4.129 9 C 0.083 3.917 10 O -0.327 6.327 11 C 0.075 3.925 12 C -0.191 4.191 13 C -0.085 4.085 14 C -0.123 4.123 15 C -0.116 4.116 16 C 0.034 3.966 17 F -0.150 7.150 18 C 0.078 3.922 19 C 0.160 3.840 20 H 0.082 0.918 21 N -0.723 5.723 22 C -0.235 4.235 23 H 0.083 0.917 24 C -0.074 4.074 25 N -0.969 5.969 26 Si 0.967 3.033 27 H -0.280 1.280 28 H -0.303 1.303 29 H -0.277 1.277 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.144 0.856 40 H 0.162 0.838 41 H 0.169 0.831 42 H 0.163 0.837 43 H 0.093 0.907 44 H 0.056 0.944 45 H 0.375 0.625 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.461 7.116 12.582 25.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 H 0.130 0.870 4 C -0.008 4.008 5 N -0.338 5.338 6 C 0.321 3.679 7 O -0.466 6.466 8 C -0.168 4.168 9 C 0.008 3.992 10 O -0.241 6.241 11 C 0.029 3.971 12 C -0.209 4.209 13 C -0.103 4.103 14 C -0.141 4.141 15 C -0.134 4.134 16 C 0.014 3.986 17 F -0.129 7.129 18 C -0.048 4.048 19 C 0.050 3.950 20 H 0.100 0.900 21 N -0.363 5.363 22 C -0.367 4.367 23 H 0.100 0.900 24 C -0.266 4.266 25 N -0.620 5.620 26 Si 0.797 3.203 27 H -0.207 1.207 28 H -0.230 1.230 29 H -0.203 1.203 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.142 0.858 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.161 0.839 40 H 0.179 0.821 41 H 0.187 0.813 42 H 0.181 0.819 43 H 0.111 0.889 44 H 0.074 0.926 45 H 0.209 0.791 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 20.473 7.087 12.778 25.152 hybrid contribution -0.819 -1.093 -1.007 1.697 sum 19.654 5.993 11.771 23.681 Atomic orbital electron populations 1.21478 0.93584 1.01310 1.02016 1.22623 0.96692 0.99342 0.93112 0.86966 1.22306 0.82395 0.97804 0.98309 1.48485 1.11931 1.65236 1.08100 1.20212 0.85386 0.76609 0.85685 1.90661 1.84215 1.56044 1.15727 1.21364 0.90767 1.05421 0.99274 1.22405 0.80501 1.00691 0.95586 1.86010 1.21322 1.81985 1.34787 1.19327 0.88082 0.99333 0.90311 1.21481 1.02642 1.06216 0.90604 1.21472 0.92107 0.95627 1.01106 1.21395 0.98323 0.99976 0.94413 1.21383 0.98663 1.00003 0.93352 1.17489 0.93495 1.09386 0.78186 1.91456 1.94902 1.94577 1.31936 1.23154 1.01534 1.01898 0.78185 1.21495 0.88370 0.88766 0.96365 0.89970 1.42607 1.46179 1.34065 1.13493 1.19602 1.17059 1.08514 0.91496 0.89951 1.25476 0.99741 1.00354 1.01022 1.69803 1.28907 1.28162 1.35102 0.85310 0.76908 0.77668 0.80453 1.20656 1.22964 1.20291 0.94447 0.90985 0.92400 0.93617 0.90122 0.85813 0.87647 0.91437 0.90334 0.83866 0.82082 0.81303 0.81947 0.88913 0.92564 0.79135 0.94283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 8.85 71.98 0.64 -3.06 16 2 C -0.10 -2.74 3.53 -9.33 -0.03 -2.78 16 3 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16 4 C 0.11 3.54 6.36 86.93 0.55 4.09 16 5 N -0.61 -18.77 3.32 -811.38 -2.70 -21.47 16 6 C 0.53 16.37 7.85 87.66 0.69 17.06 16 7 O -0.58 -21.02 16.24 -3.02 -0.05 -21.07 16 8 C -0.13 -3.18 5.26 29.85 0.16 -3.02 16 9 C 0.08 2.02 4.03 71.98 0.29 2.31 16 10 O -0.33 -8.73 10.00 -93.05 -0.93 -9.66 16 11 C 0.08 1.81 6.69 22.53 0.15 1.96 16 12 C -0.19 -3.58 9.04 22.36 0.20 -3.38 16 13 C -0.09 -1.11 10.04 22.26 0.22 -0.88 16 14 C -0.12 -1.39 10.04 22.28 0.22 -1.17 16 15 C -0.12 -1.78 10.02 22.30 0.22 -1.55 16 16 C 0.03 0.79 7.31 22.45 0.16 0.95 16 17 F -0.15 -4.05 17.11 44.97 0.77 -3.28 16 18 C 0.08 2.36 6.23 86.73 0.54 2.90 16 19 C 0.16 5.40 3.36 46.18 0.16 5.55 16 20 H 0.08 2.62 8.12 -2.39 -0.02 2.60 16 21 N -0.72 -32.82 4.62 -317.32 -1.47 -34.29 16 22 C -0.23 -12.00 9.98 84.03 0.84 -11.16 16 23 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 24 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 25 N -0.97 -57.59 13.06 21.65 0.28 -57.30 16 26 Si 0.97 44.70 29.55 68.60 2.03 46.73 16 27 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 28 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 29 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 30 H 0.04 1.34 6.39 -2.39 -0.02 1.33 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.05 1.64 7.99 -2.39 -0.02 1.62 16 34 H 0.08 2.33 8.03 -2.39 -0.02 2.31 16 35 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.07 1.69 7.62 -2.39 -0.02 1.67 16 38 H 0.08 1.78 7.62 -2.39 -0.02 1.76 16 39 H 0.14 2.53 6.30 -2.91 -0.02 2.51 16 40 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 41 H 0.17 0.71 8.06 -2.91 -0.02 0.68 16 42 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.06 2.00 8.04 -2.39 -0.02 1.98 16 45 H 0.37 18.83 6.11 -92.71 -0.57 18.26 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -68.67 384.70 3.84 -64.83 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.43 Total: 31.28 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 5.48 Total: 4.23 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -3.88 Total: -113.06 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.98 Total: -30.74 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.77 Total: -3.28 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -68.67 3.84 -64.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733856494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.254 kcal (2) G-P(sol) polarization free energy of solvation -68.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds