Wall clock time and date at job start Sat Apr 11 2020 04:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.89418 * 2 1 4 4 C 1.55134 * 110.93821 * 124.07779 * 2 1 3 5 5 N 1.47424 * 104.72319 * 155.28261 * 4 2 1 6 6 C 1.34777 * 125.64902 * 155.81644 * 5 4 2 7 7 O 1.21288 * 119.99593 * 359.71922 * 6 5 4 8 8 C 1.50697 * 120.00369 * 179.72080 * 6 5 4 9 9 C 1.52997 * 109.47466 * 180.02562 * 8 6 5 10 10 O 1.42898 * 109.47319 * 180.02562 * 9 8 6 11 11 C 1.35958 * 117.00089 * 180.02562 * 10 9 8 12 12 C 1.38653 * 120.06208 * 359.97438 * 11 10 9 13 13 C 1.38183 * 119.97128 * 179.97438 * 12 11 10 14 14 C 1.38259 * 120.09181 * 0.02562 * 13 12 11 15 15 C 1.38262 * 120.12767 * 0.02562 * 14 13 12 16 16 C 1.38334 * 120.02958 * 359.69757 * 15 14 13 17 17 F 1.35088 * 120.04849 * 180.28076 * 16 15 14 18 18 C 1.47027 * 108.70267 * 335.55716 * 5 4 2 19 19 C 1.54318 * 107.27329 * 1.28162 * 18 5 4 20 20 H 1.09003 * 110.72140 * 263.65710 * 19 18 5 21 21 N 1.46497 * 110.72219 * 140.55776 * 19 18 5 22 22 C 1.36933 * 119.99978 * 86.45339 * 21 19 18 23 23 H 1.08000 * 120.00259 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00264 * 180.02562 * 22 21 19 25 25 N 1.31625 * 119.99648 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00321 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46865 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.46964 * 119.99950 * 26 24 22 29 29 H 1.48498 * 109.47253 * 240.00099 * 26 24 22 30 30 H 1.08992 * 109.47757 * 183.88243 * 1 2 3 31 31 H 1.09001 * 109.46526 * 303.88465 * 1 2 3 32 32 H 1.08996 * 109.47013 * 63.87611 * 1 2 3 33 33 H 1.09008 * 110.49471 * 36.44618 * 4 2 1 34 34 H 1.08992 * 110.34330 * 274.04749 * 4 2 1 35 35 H 1.09002 * 109.47120 * 59.99760 * 8 6 5 36 36 H 1.08998 * 109.46862 * 300.00562 * 8 6 5 37 37 H 1.09002 * 109.47153 * 59.99773 * 9 8 6 38 38 H 1.09001 * 109.46832 * 299.99964 * 9 8 6 39 39 H 1.08003 * 120.01796 * 359.97438 * 12 11 10 40 40 H 1.07997 * 119.95463 * 179.97438 * 13 12 11 41 41 H 1.07999 * 119.93943 * 179.97438 * 14 13 12 42 42 H 1.08001 * 119.98187 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.88328 * 120.70218 * 18 5 4 44 44 H 1.09000 * 109.87820 * 241.71180 * 18 5 4 45 45 H 0.97002 * 119.99612 * 266.46008 * 21 19 18 46 46 H 0.96999 * 119.99499 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0844 -0.8118 1.2001 5 7 3.4279 -1.2424 0.7725 6 6 4.4489 -1.5606 1.5928 7 8 4.3025 -1.4992 2.7952 8 6 5.7724 -1.9926 1.0160 9 6 6.7505 -2.2939 2.1533 10 8 8.0057 -2.7030 1.6063 11 6 8.9928 -3.0106 2.4891 12 6 8.7582 -2.9200 3.8527 13 6 9.7627 -3.2337 4.7483 14 6 11.0019 -3.6373 4.2866 15 6 11.2405 -3.7279 2.9278 16 6 10.2368 -3.4207 2.0267 17 9 10.4677 -3.5146 0.6990 18 6 3.4677 -1.2732 -0.6969 19 6 2.0861 -0.8076 -1.2026 20 1 1.4481 -1.6632 -1.4241 21 7 2.2277 0.0501 -2.3817 22 6 2.3023 -0.5085 -3.6297 23 1 2.2562 -1.5814 -3.7448 24 6 2.4370 0.3041 -4.7470 25 7 2.4936 1.6116 -4.6068 26 14 2.5380 -0.4579 -6.4495 27 1 2.4521 -1.9361 -6.3361 28 1 1.4146 0.0412 -7.2826 29 1 3.8281 -0.0847 -7.0832 30 1 -0.3634 -1.0252 0.0696 31 1 -0.3632 0.5730 0.8532 32 1 -0.3633 0.4525 -0.9226 33 1 1.4536 -1.6785 1.3986 34 1 2.1524 -0.1802 2.0857 35 1 6.1748 -1.1945 0.3921 36 1 5.6304 -2.8889 0.4123 37 1 6.3479 -3.0922 2.7768 38 1 6.8925 -1.3977 2.7573 39 1 7.7908 -2.6045 4.2147 40 1 9.5798 -3.1626 5.8103 41 1 11.7853 -3.8814 4.9888 42 1 12.2095 -4.0430 2.5698 43 1 4.2424 -0.5984 -1.0610 44 1 3.6684 -2.2878 -1.0410 45 1 2.2688 1.0137 -2.2784 46 1 2.5881 2.1794 -5.3875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733856496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:10 Heat of formation + Delta-G solvation = -82.020914 kcal Electronic energy + Delta-G solvation = -28136.893557 eV Core-core repulsion = 23941.537257 eV Total energy + Delta-G solvation = -4195.356300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.95964 -40.41497 -39.84126 -37.97057 -37.48172 -34.14626 -32.85803 -32.02593 -31.01284 -30.75793 -29.79033 -27.59557 -26.69219 -24.64576 -23.96607 -22.81784 -22.30367 -21.43275 -20.03306 -19.19250 -18.57873 -17.47487 -17.18466 -16.86225 -16.78840 -16.57705 -16.05239 -15.61133 -15.35144 -14.97938 -14.76372 -14.65148 -14.18906 -14.05855 -13.62943 -13.44422 -13.10294 -13.09831 -12.99958 -12.66467 -12.46457 -12.32418 -12.17868 -12.02511 -11.82033 -11.60829 -11.32707 -11.19622 -11.04695 -11.01451 -10.80160 -10.66112 -10.28533 -10.02064 -9.90535 -9.75507 -9.28005 -9.06106 -8.49960 -8.44668 -7.15053 -5.89910 -3.21153 0.79340 0.93598 2.54035 2.65694 3.25508 3.32553 3.36682 3.43089 3.44781 3.96026 4.37071 4.45850 4.47807 4.57739 4.72931 4.75010 4.83480 4.88698 4.99164 5.08002 5.13341 5.15720 5.25366 5.50243 5.53659 5.56351 5.58938 5.67125 5.70278 5.72046 5.76239 5.84503 5.85294 5.93407 6.04616 6.13061 6.19665 6.29961 6.33634 6.41068 6.46077 6.55155 6.80462 7.01920 7.58839 7.66522 8.17961 8.27471 9.39659 9.92636 10.27402 11.31913 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.002379 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.628809 B =11764.722417 C =13792.098786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.084 0.916 4 C 0.114 3.886 5 N -0.609 5.609 6 C 0.534 3.466 7 O -0.559 6.559 8 C -0.137 4.137 9 C 0.077 3.923 10 O -0.308 6.308 11 C 0.104 3.896 12 C -0.182 4.182 13 C -0.089 4.089 14 C -0.133 4.133 15 C -0.118 4.118 16 C 0.066 3.934 17 F -0.132 7.132 18 C 0.069 3.931 19 C 0.177 3.823 20 H 0.067 0.933 21 N -0.711 5.711 22 C -0.249 4.249 23 H 0.073 0.927 24 C -0.008 4.008 25 N -0.928 5.928 26 Si 0.907 3.093 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.387 0.613 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.785 -9.121 18.337 23.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.103 0.897 4 C -0.009 4.009 5 N -0.341 5.341 6 C 0.322 3.678 7 O -0.439 6.439 8 C -0.177 4.177 9 C 0.002 3.998 10 O -0.221 6.221 11 C 0.057 3.943 12 C -0.201 4.201 13 C -0.108 4.108 14 C -0.151 4.151 15 C -0.137 4.137 16 C 0.046 3.954 17 F -0.110 7.110 18 C -0.057 4.057 19 C 0.065 3.935 20 H 0.085 0.915 21 N -0.351 5.351 22 C -0.380 4.380 23 H 0.091 0.909 24 C -0.204 4.204 25 N -0.576 5.576 26 Si 0.738 3.262 27 H -0.204 1.204 28 H -0.218 1.218 29 H -0.217 1.217 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.159 0.841 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.159 0.841 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.222 0.778 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.752 -9.199 18.537 23.321 hybrid contribution 0.140 -0.017 -1.164 1.172 sum 10.892 -9.216 17.373 22.481 Atomic orbital electron populations 1.21611 0.93793 1.01582 1.02162 1.22669 0.96391 0.99768 0.94491 0.89733 1.22334 0.82492 0.98185 0.97867 1.48501 1.11890 1.65429 1.08329 1.19810 0.84633 0.77312 0.86015 1.90680 1.83542 1.55068 1.14573 1.21423 0.92159 1.05067 0.99066 1.22512 0.80713 1.00698 0.95926 1.86076 1.20895 1.81357 1.33806 1.19022 0.88128 0.97618 0.89491 1.21306 1.01787 1.05925 0.91102 1.21047 0.92557 0.97248 0.99920 1.20934 0.97709 1.01982 0.94522 1.21035 0.98499 1.01115 0.93052 1.17040 0.92544 1.07363 0.78407 1.91516 1.94794 1.94143 1.30562 1.23444 1.03674 1.01516 0.77087 1.21246 0.91470 0.93889 0.86932 0.91513 1.42369 1.86915 1.05299 1.00547 1.19272 1.43229 0.91959 0.83531 0.90898 1.24775 1.02251 0.95364 0.98059 1.69671 1.56395 1.02314 1.29171 0.86123 0.77301 0.78262 0.84495 1.20438 1.21769 1.21746 0.92816 0.93138 0.91270 0.91495 0.90864 0.87418 0.87626 0.90858 0.90812 0.84089 0.85001 0.84892 0.84104 0.90548 0.92024 0.77843 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.31 37.16 0.35 -1.44 16 2 C -0.11 -1.70 3.26 -88.35 -0.29 -1.98 16 3 H 0.08 1.35 8.00 -51.93 -0.42 0.94 16 4 C 0.11 1.60 6.38 -2.41 -0.02 1.59 16 5 N -0.61 -9.15 3.32 -170.38 -0.57 -9.71 16 6 C 0.53 7.95 7.85 -10.99 -0.09 7.86 16 7 O -0.56 -9.54 16.24 5.55 0.09 -9.45 16 8 C -0.14 -1.70 5.26 -27.89 -0.15 -1.85 16 9 C 0.08 0.90 4.03 37.16 0.15 1.05 16 10 O -0.31 -4.02 10.00 -19.61 -0.20 -4.21 16 11 C 0.10 1.23 6.69 -39.18 -0.26 0.97 16 12 C -0.18 -1.75 9.04 -39.45 -0.36 -2.10 16 13 C -0.09 -0.68 10.04 -39.59 -0.40 -1.08 16 14 C -0.13 -0.95 10.04 -39.56 -0.40 -1.35 16 15 C -0.12 -1.01 10.02 -39.54 -0.40 -1.41 16 16 C 0.07 0.77 7.31 -39.30 -0.29 0.48 16 17 F -0.13 -1.75 17.11 2.25 0.04 -1.71 16 18 C 0.07 1.11 6.24 -3.06 -0.02 1.09 16 19 C 0.18 3.13 3.05 -66.10 -0.20 2.93 16 20 H 0.07 1.19 8.02 -51.93 -0.42 0.78 16 21 N -0.71 -16.15 5.18 -51.65 -0.27 -16.42 16 22 C -0.25 -6.39 9.98 -15.06 -0.15 -6.54 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 25 N -0.93 -26.66 13.06 55.49 0.72 -25.93 16 26 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 30 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 0.88 7.99 -51.92 -0.41 0.46 16 34 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 35 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 0.82 7.62 -51.93 -0.40 0.42 16 38 H 0.07 0.85 7.62 -51.93 -0.40 0.45 16 39 H 0.14 1.22 6.30 -52.48 -0.33 0.89 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.39 9.48 7.71 -40.82 -0.31 9.17 16 46 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -30.53 388.22 -8.82 -39.35 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.87 Total: 7.94 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -2.60 Total: -2.08 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.11 Total: -52.07 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.11 Total: -13.66 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.53 -8.82 -39.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733856496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.672 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds