Wall clock time and date at job start Sat Apr 11 2020 04:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.89418 * 2 1 4 4 C 1.55134 * 110.93821 * 124.07779 * 2 1 3 5 5 N 1.47424 * 104.72319 * 155.28261 * 4 2 1 6 6 C 1.34777 * 125.64902 * 155.81644 * 5 4 2 7 7 O 1.21288 * 119.99593 * 359.71922 * 6 5 4 8 8 C 1.50697 * 120.00369 * 179.72080 * 6 5 4 9 9 C 1.52997 * 109.47466 * 180.02562 * 8 6 5 10 10 O 1.42898 * 109.47319 * 180.02562 * 9 8 6 11 11 C 1.35958 * 117.00089 * 180.02562 * 10 9 8 12 12 C 1.38653 * 120.06208 * 359.97438 * 11 10 9 13 13 C 1.38183 * 119.97128 * 179.97438 * 12 11 10 14 14 C 1.38259 * 120.09181 * 0.02562 * 13 12 11 15 15 C 1.38262 * 120.12767 * 0.02562 * 14 13 12 16 16 C 1.38334 * 120.02958 * 359.69757 * 15 14 13 17 17 F 1.35088 * 120.04849 * 180.28076 * 16 15 14 18 18 C 1.47027 * 108.70267 * 335.55716 * 5 4 2 19 19 C 1.54318 * 107.27329 * 1.28162 * 18 5 4 20 20 H 1.09003 * 110.72140 * 263.65710 * 19 18 5 21 21 N 1.46497 * 110.72219 * 140.55776 * 19 18 5 22 22 C 1.36933 * 119.99978 * 86.45339 * 21 19 18 23 23 H 1.08000 * 120.00259 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00264 * 180.02562 * 22 21 19 25 25 N 1.31625 * 119.99648 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00321 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46865 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.46964 * 119.99950 * 26 24 22 29 29 H 1.48498 * 109.47253 * 240.00099 * 26 24 22 30 30 H 1.08992 * 109.47757 * 183.88243 * 1 2 3 31 31 H 1.09001 * 109.46526 * 303.88465 * 1 2 3 32 32 H 1.08996 * 109.47013 * 63.87611 * 1 2 3 33 33 H 1.09008 * 110.49471 * 36.44618 * 4 2 1 34 34 H 1.08992 * 110.34330 * 274.04749 * 4 2 1 35 35 H 1.09002 * 109.47120 * 59.99760 * 8 6 5 36 36 H 1.08998 * 109.46862 * 300.00562 * 8 6 5 37 37 H 1.09002 * 109.47153 * 59.99773 * 9 8 6 38 38 H 1.09001 * 109.46832 * 299.99964 * 9 8 6 39 39 H 1.08003 * 120.01796 * 359.97438 * 12 11 10 40 40 H 1.07997 * 119.95463 * 179.97438 * 13 12 11 41 41 H 1.07999 * 119.93943 * 179.97438 * 14 13 12 42 42 H 1.08001 * 119.98187 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.88328 * 120.70218 * 18 5 4 44 44 H 1.09000 * 109.87820 * 241.71180 * 18 5 4 45 45 H 0.97002 * 119.99612 * 266.46008 * 21 19 18 46 46 H 0.96999 * 119.99499 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0844 -0.8118 1.2001 5 7 3.4279 -1.2424 0.7725 6 6 4.4489 -1.5606 1.5928 7 8 4.3025 -1.4992 2.7952 8 6 5.7724 -1.9926 1.0160 9 6 6.7505 -2.2939 2.1533 10 8 8.0057 -2.7030 1.6063 11 6 8.9928 -3.0106 2.4891 12 6 8.7582 -2.9200 3.8527 13 6 9.7627 -3.2337 4.7483 14 6 11.0019 -3.6373 4.2866 15 6 11.2405 -3.7279 2.9278 16 6 10.2368 -3.4207 2.0267 17 9 10.4677 -3.5146 0.6990 18 6 3.4677 -1.2732 -0.6969 19 6 2.0861 -0.8076 -1.2026 20 1 1.4481 -1.6632 -1.4241 21 7 2.2277 0.0501 -2.3817 22 6 2.3023 -0.5085 -3.6297 23 1 2.2562 -1.5814 -3.7448 24 6 2.4370 0.3041 -4.7470 25 7 2.4936 1.6116 -4.6068 26 14 2.5380 -0.4579 -6.4495 27 1 2.4521 -1.9361 -6.3361 28 1 1.4146 0.0412 -7.2826 29 1 3.8281 -0.0847 -7.0832 30 1 -0.3634 -1.0252 0.0696 31 1 -0.3632 0.5730 0.8532 32 1 -0.3633 0.4525 -0.9226 33 1 1.4536 -1.6785 1.3986 34 1 2.1524 -0.1802 2.0857 35 1 6.1748 -1.1945 0.3921 36 1 5.6304 -2.8889 0.4123 37 1 6.3479 -3.0922 2.7768 38 1 6.8925 -1.3977 2.7573 39 1 7.7908 -2.6045 4.2147 40 1 9.5798 -3.1626 5.8103 41 1 11.7853 -3.8814 4.9888 42 1 12.2095 -4.0430 2.5698 43 1 4.2424 -0.5984 -1.0610 44 1 3.6684 -2.2878 -1.0410 45 1 2.2688 1.0137 -2.2784 46 1 2.5881 2.1794 -5.3875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733856496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:10 Heat of formation + Delta-G solvation = -99.462206 kcal Electronic energy + Delta-G solvation = -28137.649868 eV Core-core repulsion = 23941.537257 eV Total energy + Delta-G solvation = -4196.112612 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.85427 -41.41653 -40.88607 -39.11569 -38.42153 -35.87066 -34.14087 -33.16378 -32.41799 -31.68698 -30.56313 -29.14205 -27.78080 -25.97618 -25.39352 -23.57309 -23.25449 -22.68275 -21.39281 -20.29203 -19.52599 -19.07980 -18.36838 -17.82165 -17.73959 -17.57411 -17.22964 -16.63644 -16.59745 -16.09890 -15.87976 -15.50633 -15.41181 -15.35640 -14.98473 -14.66276 -14.58279 -14.12281 -14.06208 -13.86829 -13.57736 -13.41543 -13.05835 -13.00707 -12.92375 -12.86582 -12.84859 -12.57312 -12.21160 -12.11439 -12.04562 -12.02619 -11.90111 -11.68172 -11.41938 -11.12634 -10.92646 -9.96927 -9.71045 -9.26881 -9.06084 -7.94508 -5.23971 0.10451 0.23740 1.45467 1.49305 1.50855 1.56763 1.59635 2.25083 2.57147 2.58567 3.20339 3.36411 3.38635 3.56070 3.76265 3.77437 3.84491 3.85366 3.88717 3.98230 4.15484 4.23190 4.29572 4.32274 4.34797 4.45938 4.48348 4.58009 4.62059 4.67571 4.69879 4.89516 4.90857 4.96762 5.07948 5.10550 5.14003 5.20259 5.24540 5.33316 5.41233 5.48964 5.56451 5.67733 6.20690 6.26458 6.41944 6.97245 7.34454 8.06168 8.29466 9.28531 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.002379 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.628809 B =11764.722417 C =13792.098786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 H 0.071 0.929 4 C 0.117 3.883 5 N -0.610 5.610 6 C 0.535 3.465 7 O -0.579 6.579 8 C -0.133 4.133 9 C 0.084 3.916 10 O -0.329 6.329 11 C 0.075 3.925 12 C -0.189 4.189 13 C -0.085 4.085 14 C -0.123 4.123 15 C -0.116 4.116 16 C 0.032 3.968 17 F -0.151 7.151 18 C 0.082 3.918 19 C 0.170 3.830 20 H 0.071 0.929 21 N -0.722 5.722 22 C -0.237 4.237 23 H 0.081 0.919 24 C -0.071 4.071 25 N -0.967 5.967 26 Si 0.967 3.033 27 H -0.264 1.264 28 H -0.296 1.296 29 H -0.298 1.298 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.146 0.854 40 H 0.163 0.837 41 H 0.169 0.831 42 H 0.162 0.838 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.375 0.625 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.395 -10.860 20.525 25.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.124 4.124 3 H 0.089 0.911 4 C -0.005 4.005 5 N -0.342 5.342 6 C 0.325 3.675 7 O -0.460 6.460 8 C -0.172 4.172 9 C 0.008 3.992 10 O -0.243 6.243 11 C 0.029 3.971 12 C -0.208 4.208 13 C -0.102 4.102 14 C -0.141 4.141 15 C -0.135 4.135 16 C 0.013 3.987 17 F -0.130 7.130 18 C -0.044 4.044 19 C 0.059 3.941 20 H 0.089 0.911 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.099 0.901 24 C -0.264 4.264 25 N -0.617 5.617 26 Si 0.797 3.203 27 H -0.188 1.188 28 H -0.224 1.224 29 H -0.226 1.226 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.164 0.836 40 H 0.180 0.820 41 H 0.187 0.813 42 H 0.179 0.821 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.208 0.792 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.359 -10.989 20.766 26.096 hybrid contribution -0.010 0.476 -1.667 1.734 sum 11.350 -10.513 19.099 24.579 Atomic orbital electron populations 1.21568 0.92318 1.02723 1.01971 1.22573 0.97550 0.98747 0.93507 0.91074 1.22383 0.82169 0.98718 0.97250 1.48512 1.12501 1.65509 1.07724 1.20109 0.85060 0.76667 0.85654 1.90669 1.83923 1.55987 1.15404 1.21389 0.91116 1.05388 0.99351 1.22418 0.80463 1.00805 0.95472 1.86021 1.21426 1.81982 1.34895 1.19329 0.88086 0.99271 0.90369 1.21487 1.02770 1.06095 0.90463 1.21480 0.92061 0.95549 1.01150 1.21396 0.98361 1.00029 0.94331 1.21381 0.98568 1.00102 0.93414 1.17520 0.93619 1.09436 0.78153 1.91453 1.94956 1.94541 1.32043 1.23072 1.01843 1.01633 0.77834 1.21450 0.92474 0.93791 0.86345 0.91074 1.42489 1.87078 1.05231 1.01301 1.19646 1.40334 0.92285 0.84605 0.90080 1.25495 1.03687 0.95800 1.01393 1.69813 1.58960 1.03522 1.29449 0.85171 0.76379 0.78241 0.80554 1.18819 1.22385 1.22555 0.91348 0.90948 0.93487 0.89726 0.90505 0.87469 0.86609 0.90399 0.90899 0.83639 0.81953 0.81314 0.82065 0.92264 0.90822 0.79239 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 9.31 71.98 0.67 -2.55 16 2 C -0.10 -3.00 3.26 -9.32 -0.03 -3.04 16 3 H 0.07 2.27 8.00 -2.39 -0.02 2.25 16 4 C 0.12 3.08 6.38 86.93 0.55 3.63 16 5 N -0.61 -17.57 3.32 -811.35 -2.70 -20.27 16 6 C 0.54 15.41 7.85 87.66 0.69 16.10 16 7 O -0.58 -19.10 16.24 -3.05 -0.05 -19.15 16 8 C -0.13 -3.24 5.26 29.85 0.16 -3.08 16 9 C 0.08 1.95 4.03 71.98 0.29 2.24 16 10 O -0.33 -8.78 10.00 -93.07 -0.93 -9.71 16 11 C 0.08 1.79 6.69 22.53 0.15 1.94 16 12 C -0.19 -3.41 9.04 22.36 0.20 -3.21 16 13 C -0.08 -1.04 10.04 22.26 0.22 -0.82 16 14 C -0.12 -1.36 10.04 22.28 0.22 -1.13 16 15 C -0.12 -1.80 10.02 22.30 0.22 -1.57 16 16 C 0.03 0.75 7.31 22.45 0.16 0.92 16 17 F -0.15 -4.18 17.11 44.97 0.77 -3.41 16 18 C 0.08 2.58 6.24 86.73 0.54 3.12 16 19 C 0.17 5.88 3.05 46.18 0.14 6.02 16 20 H 0.07 2.43 8.02 -2.39 -0.02 2.41 16 21 N -0.72 -33.00 5.18 -317.33 -1.64 -34.64 16 22 C -0.24 -12.12 9.98 84.03 0.84 -11.28 16 23 H 0.08 3.95 7.83 -2.91 -0.02 3.92 16 24 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 25 N -0.97 -56.89 13.06 21.65 0.28 -56.61 16 26 Si 0.97 44.41 29.55 68.60 2.03 46.43 16 27 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 28 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 29 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 30 H 0.07 1.51 8.07 -2.39 -0.02 1.50 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.97 7.99 -2.38 -0.02 1.95 16 34 H 0.08 2.01 8.03 -2.39 -0.02 1.99 16 35 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.08 1.71 7.62 -2.39 -0.02 1.69 16 38 H 0.07 1.67 7.62 -2.39 -0.02 1.66 16 39 H 0.15 2.38 6.30 -2.91 -0.02 2.37 16 40 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 41 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 42 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 43 H 0.06 2.09 8.03 -2.39 -0.02 2.07 16 44 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.38 18.84 7.71 -92.71 -0.72 18.13 16 46 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -66.88 388.22 3.54 -63.35 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.27 Total: 30.14 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 5.50 Total: 3.88 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -4.06 Total: -111.52 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.98 Total: -28.87 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.77 Total: -3.41 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -66.88 3.54 -63.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733856496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.116 kcal (2) G-P(sol) polarization free energy of solvation -66.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds