Wall clock time and date at job start Sat Apr 11 2020 04:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.92193 * 2 1 4 4 C 1.54915 * 111.00370 * 236.09469 * 2 1 3 5 5 N 1.47425 * 104.83334 * 204.91773 * 4 2 1 6 6 C 1.34776 * 125.64906 * 204.09456 * 5 4 2 7 7 O 1.21278 * 119.99712 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99804 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.46891 * 179.97438 * 8 6 5 10 10 O 1.42903 * 109.47055 * 179.97438 * 9 8 6 11 11 C 1.35951 * 116.99660 * 180.02562 * 10 9 8 12 12 C 1.38658 * 120.06748 * 359.97438 * 11 10 9 13 13 C 1.38181 * 119.97279 * 179.97438 * 12 11 10 14 14 C 1.38259 * 120.09334 * 0.02562 * 13 12 11 15 15 C 1.38258 * 120.12813 * 0.02562 * 14 13 12 16 16 C 1.38330 * 120.02698 * 359.69665 * 15 14 13 17 17 F 1.35106 * 120.04934 * 180.28173 * 16 15 14 18 18 C 1.47022 * 108.70334 * 24.12789 * 5 4 2 19 19 C 1.54327 * 107.27336 * 358.94217 * 18 5 4 20 20 H 1.09002 * 110.72173 * 219.44580 * 19 18 5 21 21 N 1.46504 * 110.72122 * 96.16784 * 19 18 5 22 22 C 1.36936 * 119.99698 * 86.45467 * 21 19 18 23 23 H 1.07997 * 120.00222 * 0.02562 * 22 21 19 24 24 C 1.38815 * 119.99415 * 179.97438 * 22 21 19 25 25 N 1.31609 * 120.00382 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99361 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47213 * 90.00769 * 26 24 22 28 28 H 1.48499 * 109.47190 * 210.00156 * 26 24 22 29 29 H 1.48498 * 109.47527 * 330.00760 * 26 24 22 30 30 H 1.09006 * 109.47371 * 296.09887 * 1 2 3 31 31 H 1.09002 * 109.47302 * 56.09664 * 1 2 3 32 32 H 1.08999 * 109.47292 * 176.09915 * 1 2 3 33 33 H 1.08997 * 110.36462 * 86.07767 * 4 2 1 34 34 H 1.08999 * 110.46102 * 323.80240 * 4 2 1 35 35 H 1.09002 * 109.47258 * 299.99966 * 8 6 5 36 36 H 1.08999 * 109.47362 * 60.00045 * 8 6 5 37 37 H 1.09002 * 109.47333 * 300.00155 * 9 8 6 38 38 H 1.08999 * 109.46889 * 59.99990 * 9 8 6 39 39 H 1.07999 * 120.01122 * 359.97438 * 12 11 10 40 40 H 1.07998 * 119.95576 * 180.02562 * 13 12 11 41 41 H 1.08004 * 119.93981 * 179.97438 * 14 13 12 42 42 H 1.07998 * 119.98927 * 179.97438 * 15 14 13 43 43 H 1.08997 * 109.88723 * 239.52626 * 18 5 4 44 44 H 1.09000 * 110.01436 * 118.43179 * 18 5 4 45 45 H 0.96994 * 119.99856 * 266.45473 * 21 19 18 46 46 H 0.97006 * 120.00338 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4270 -1.2432 -0.7733 6 6 4.4476 -1.5618 -1.5940 7 8 4.3008 -1.5000 -2.7963 8 6 5.7710 -1.9946 -1.0176 9 6 6.7486 -2.2962 -2.1554 10 8 8.0037 -2.7061 -1.6089 11 6 8.9906 -3.0131 -2.4921 12 6 8.7557 -2.9221 -3.8556 13 6 9.7604 -3.2340 -4.7515 14 6 10.9999 -3.6373 -4.2904 15 6 11.2382 -3.7304 -2.9317 16 6 10.2379 -3.4139 -2.0302 17 9 10.4720 -3.4993 -0.7023 18 6 3.4674 -1.2742 0.6960 19 6 2.0861 -0.8079 1.2023 20 1 2.1921 -0.1699 2.0797 21 7 1.2267 -1.9574 1.4963 22 6 1.2815 -2.5563 2.7266 23 1 1.9579 -2.1809 3.4802 24 6 0.4668 -3.6451 3.0053 25 7 -0.3578 -4.1022 2.0870 26 14 0.5420 -4.4624 4.6833 27 1 -0.4352 -3.8138 5.5941 28 1 0.2107 -5.9035 4.5473 29 1 1.9102 -4.3197 5.2426 30 1 -0.3634 0.4521 0.9229 31 1 -0.3634 0.5732 -0.8529 32 1 -0.3634 -1.0253 -0.0699 33 1 2.1559 -0.1721 -2.0837 34 1 1.4524 -1.6705 -1.4043 35 1 6.1740 -1.1969 -0.3937 36 1 5.6287 -2.8911 -0.4142 37 1 6.3454 -3.0942 -2.7790 38 1 6.8909 -1.4000 -2.7592 39 1 7.7879 -2.6076 -4.2172 40 1 9.5773 -3.1626 -5.8135 41 1 11.7833 -3.8809 -4.9929 42 1 12.2071 -4.0461 -2.5739 43 1 4.2425 -0.5998 1.0600 44 1 3.6661 -2.2884 1.0424 45 1 0.6190 -2.2943 0.8196 46 1 -0.9269 -4.8633 2.2817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733856498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:13 Heat of formation + Delta-G solvation = -78.494740 kcal Electronic energy + Delta-G solvation = -28356.971700 eV Core-core repulsion = 24161.768306 eV Total energy + Delta-G solvation = -4195.203394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.95598 -40.38825 -39.80909 -37.98942 -37.48415 -34.00828 -32.74705 -31.97468 -31.00051 -30.53345 -29.76718 -27.79253 -26.59493 -24.57631 -23.87264 -22.82185 -22.44451 -21.75860 -19.37228 -19.11928 -18.52831 -17.61614 -17.37123 -16.84808 -16.73783 -16.44155 -15.92144 -15.55919 -15.27867 -14.91710 -14.66839 -14.62695 -14.28335 -14.13755 -13.80144 -13.32845 -13.09626 -13.01688 -12.98208 -12.57507 -12.33673 -12.17365 -12.07866 -11.93216 -11.80133 -11.61258 -11.30370 -11.16240 -10.98966 -10.96687 -10.80851 -10.51726 -10.30340 -9.98470 -9.80366 -9.68211 -9.26848 -9.05909 -8.48600 -8.34995 -7.11776 -5.88169 -3.18539 0.80500 0.94850 2.57658 2.74542 3.26759 3.37263 3.41206 3.43301 3.44688 3.97024 4.38835 4.48398 4.49305 4.60759 4.76300 4.78209 4.85140 4.89833 5.04868 5.11921 5.15668 5.27125 5.29527 5.46581 5.56625 5.59300 5.62122 5.68813 5.72758 5.73093 5.85824 5.87598 5.89883 6.06070 6.12844 6.20826 6.28733 6.31594 6.34885 6.46659 6.53633 6.69889 6.87480 7.03328 7.60091 7.76487 8.26745 8.29993 9.41770 9.95857 10.30529 11.33837 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.002377 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.262974 B =11775.851680 C =13243.116457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.079 0.921 4 C 0.115 3.885 5 N -0.602 5.602 6 C 0.533 3.467 7 O -0.559 6.559 8 C -0.136 4.136 9 C 0.076 3.924 10 O -0.308 6.308 11 C 0.105 3.895 12 C -0.182 4.182 13 C -0.089 4.089 14 C -0.133 4.133 15 C -0.118 4.118 16 C 0.066 3.934 17 F -0.132 7.132 18 C 0.067 3.933 19 C 0.172 3.828 20 H 0.071 0.929 21 N -0.712 5.712 22 C -0.248 4.248 23 H 0.072 0.928 24 C -0.008 4.008 25 N -0.929 5.929 26 Si 0.907 3.093 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.142 0.858 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.387 0.613 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.174 5.742 -11.750 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.097 0.903 4 C -0.007 4.007 5 N -0.335 5.335 6 C 0.321 3.679 7 O -0.439 6.439 8 C -0.176 4.176 9 C 0.001 3.999 10 O -0.222 6.222 11 C 0.058 3.942 12 C -0.201 4.201 13 C -0.107 4.107 14 C -0.152 4.152 15 C -0.137 4.137 16 C 0.046 3.954 17 F -0.111 7.111 18 C -0.059 4.059 19 C 0.060 3.940 20 H 0.089 0.911 21 N -0.353 5.353 22 C -0.379 4.379 23 H 0.090 0.910 24 C -0.205 4.205 25 N -0.576 5.576 26 Si 0.738 3.262 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.159 0.841 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.159 0.841 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.223 0.777 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 18.148 5.665 -11.959 22.460 hybrid contribution -0.210 -0.720 0.877 1.154 sum 17.938 4.945 -11.082 21.658 Atomic orbital electron populations 1.21546 0.93303 1.03008 1.01039 1.22619 0.97023 0.98458 0.95280 0.90278 1.22287 0.82681 0.98428 0.97329 1.48395 1.11909 1.65121 1.08025 1.19756 0.84655 0.77408 0.86049 1.90678 1.83631 1.55024 1.14579 1.21415 0.92179 1.04963 0.99030 1.22524 0.80645 1.00716 0.95995 1.86065 1.20932 1.81358 1.33836 1.19020 0.88040 0.97662 0.89498 1.21318 1.01785 1.05881 0.91113 1.21052 0.92532 0.97207 0.99940 1.20933 0.97720 1.01991 0.94526 1.21025 0.98572 1.01056 0.93050 1.17037 0.92511 1.07516 0.78367 1.91514 1.94745 1.94235 1.30594 1.23361 1.01756 1.02487 0.78255 1.21205 0.88249 0.89882 0.94693 0.91101 1.42457 1.45380 1.32755 1.14726 1.19221 1.18634 1.09490 0.90542 0.90957 1.24754 0.98895 0.98861 0.97950 1.69649 1.27250 1.27537 1.33190 0.86199 0.77622 0.78707 0.83670 1.21635 1.21779 1.20662 0.92035 0.93634 0.91178 0.91223 0.91105 0.87815 0.87456 0.90743 0.90871 0.84058 0.84987 0.84895 0.84125 0.92492 0.90202 0.77722 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.85 37.15 0.33 -1.66 16 2 C -0.11 -1.70 3.51 -88.47 -0.31 -2.01 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.11 1.82 6.35 -2.53 -0.02 1.81 16 5 N -0.60 -9.66 3.33 -170.52 -0.57 -10.22 16 6 C 0.53 8.40 7.85 -10.99 -0.09 8.32 16 7 O -0.56 -10.16 16.24 5.56 0.09 -10.06 16 8 C -0.14 -1.73 5.26 -27.88 -0.15 -1.88 16 9 C 0.08 0.93 4.03 37.16 0.15 1.08 16 10 O -0.31 -4.06 10.00 -19.59 -0.20 -4.25 16 11 C 0.10 1.25 6.69 -39.18 -0.26 0.99 16 12 C -0.18 -1.79 9.04 -39.45 -0.36 -2.15 16 13 C -0.09 -0.70 10.04 -39.59 -0.40 -1.10 16 14 C -0.13 -0.97 10.04 -39.57 -0.40 -1.37 16 15 C -0.12 -1.02 10.02 -39.54 -0.40 -1.42 16 16 C 0.07 0.76 7.31 -39.30 -0.29 0.47 16 17 F -0.13 -1.74 17.11 2.25 0.04 -1.70 16 18 C 0.07 1.08 6.23 -3.06 -0.02 1.06 16 19 C 0.17 3.02 3.37 -66.09 -0.22 2.80 16 20 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 21 N -0.71 -16.06 4.61 -51.64 -0.24 -16.30 16 22 C -0.25 -6.34 9.98 -15.06 -0.15 -6.49 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 25 N -0.93 -26.75 13.06 55.49 0.72 -26.03 16 26 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.24 6.38 -51.93 -0.33 0.91 16 33 H 0.07 1.05 8.04 -51.93 -0.42 0.64 16 34 H 0.07 1.24 7.99 -51.93 -0.41 0.83 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.11 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.07 0.91 7.62 -51.93 -0.40 0.51 16 38 H 0.07 0.84 7.62 -51.93 -0.40 0.44 16 39 H 0.14 1.28 6.30 -52.49 -0.33 0.95 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 42 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.44 8.04 -51.93 -0.42 1.03 16 45 H 0.39 9.42 6.10 -40.82 -0.25 9.18 16 46 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 384.67 15.07 5.80 5.80 Total: -1.00 -30.78 384.67 -8.77 -39.54 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -6.72 Total: 8.64 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -2.67 Total: -1.86 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.08 Total: -52.55 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.11 Total: -14.32 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.78 -8.77 -39.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733856498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.951 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds