Wall clock time and date at job start Sat Apr 11 2020 04:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.92193 * 2 1 4 4 C 1.54915 * 111.00370 * 236.09469 * 2 1 3 5 5 N 1.47425 * 104.83334 * 204.91773 * 4 2 1 6 6 C 1.34776 * 125.64906 * 204.09456 * 5 4 2 7 7 O 1.21278 * 119.99712 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99804 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.46891 * 179.97438 * 8 6 5 10 10 O 1.42903 * 109.47055 * 179.97438 * 9 8 6 11 11 C 1.35951 * 116.99660 * 180.02562 * 10 9 8 12 12 C 1.38658 * 120.06748 * 359.97438 * 11 10 9 13 13 C 1.38181 * 119.97279 * 179.97438 * 12 11 10 14 14 C 1.38259 * 120.09334 * 0.02562 * 13 12 11 15 15 C 1.38258 * 120.12813 * 0.02562 * 14 13 12 16 16 C 1.38330 * 120.02698 * 359.69665 * 15 14 13 17 17 F 1.35106 * 120.04934 * 180.28173 * 16 15 14 18 18 C 1.47022 * 108.70334 * 24.12789 * 5 4 2 19 19 C 1.54327 * 107.27336 * 358.94217 * 18 5 4 20 20 H 1.09002 * 110.72173 * 219.44580 * 19 18 5 21 21 N 1.46504 * 110.72122 * 96.16784 * 19 18 5 22 22 C 1.36936 * 119.99698 * 86.45467 * 21 19 18 23 23 H 1.07997 * 120.00222 * 0.02562 * 22 21 19 24 24 C 1.38815 * 119.99415 * 179.97438 * 22 21 19 25 25 N 1.31609 * 120.00382 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99361 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47213 * 90.00769 * 26 24 22 28 28 H 1.48499 * 109.47190 * 210.00156 * 26 24 22 29 29 H 1.48498 * 109.47527 * 330.00760 * 26 24 22 30 30 H 1.09006 * 109.47371 * 296.09887 * 1 2 3 31 31 H 1.09002 * 109.47302 * 56.09664 * 1 2 3 32 32 H 1.08999 * 109.47292 * 176.09915 * 1 2 3 33 33 H 1.08997 * 110.36462 * 86.07767 * 4 2 1 34 34 H 1.08999 * 110.46102 * 323.80240 * 4 2 1 35 35 H 1.09002 * 109.47258 * 299.99966 * 8 6 5 36 36 H 1.08999 * 109.47362 * 60.00045 * 8 6 5 37 37 H 1.09002 * 109.47333 * 300.00155 * 9 8 6 38 38 H 1.08999 * 109.46889 * 59.99990 * 9 8 6 39 39 H 1.07999 * 120.01122 * 359.97438 * 12 11 10 40 40 H 1.07998 * 119.95576 * 180.02562 * 13 12 11 41 41 H 1.08004 * 119.93981 * 179.97438 * 14 13 12 42 42 H 1.07998 * 119.98927 * 179.97438 * 15 14 13 43 43 H 1.08997 * 109.88723 * 239.52626 * 18 5 4 44 44 H 1.09000 * 110.01436 * 118.43179 * 18 5 4 45 45 H 0.96994 * 119.99856 * 266.45473 * 21 19 18 46 46 H 0.97006 * 120.00338 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4270 -1.2432 -0.7733 6 6 4.4476 -1.5618 -1.5940 7 8 4.3008 -1.5000 -2.7963 8 6 5.7710 -1.9946 -1.0176 9 6 6.7486 -2.2962 -2.1554 10 8 8.0037 -2.7061 -1.6089 11 6 8.9906 -3.0131 -2.4921 12 6 8.7557 -2.9221 -3.8556 13 6 9.7604 -3.2340 -4.7515 14 6 10.9999 -3.6373 -4.2904 15 6 11.2382 -3.7304 -2.9317 16 6 10.2379 -3.4139 -2.0302 17 9 10.4720 -3.4993 -0.7023 18 6 3.4674 -1.2742 0.6960 19 6 2.0861 -0.8079 1.2023 20 1 2.1921 -0.1699 2.0797 21 7 1.2267 -1.9574 1.4963 22 6 1.2815 -2.5563 2.7266 23 1 1.9579 -2.1809 3.4802 24 6 0.4668 -3.6451 3.0053 25 7 -0.3578 -4.1022 2.0870 26 14 0.5420 -4.4624 4.6833 27 1 -0.4352 -3.8138 5.5941 28 1 0.2107 -5.9035 4.5473 29 1 1.9102 -4.3197 5.2426 30 1 -0.3634 0.4521 0.9229 31 1 -0.3634 0.5732 -0.8529 32 1 -0.3634 -1.0253 -0.0699 33 1 2.1559 -0.1721 -2.0837 34 1 1.4524 -1.6705 -1.4043 35 1 6.1740 -1.1969 -0.3937 36 1 5.6287 -2.8911 -0.4142 37 1 6.3454 -3.0942 -2.7790 38 1 6.8909 -1.4000 -2.7592 39 1 7.7879 -2.6076 -4.2172 40 1 9.5773 -3.1626 -5.8135 41 1 11.7833 -3.8809 -4.9929 42 1 12.2071 -4.0461 -2.5739 43 1 4.2425 -0.5998 1.0600 44 1 3.6661 -2.2884 1.0424 45 1 0.6190 -2.2943 0.8196 46 1 -0.9269 -4.8633 2.2817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733856498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:12 Heat of formation + Delta-G solvation = -96.171058 kcal Electronic energy + Delta-G solvation = -28357.738202 eV Core-core repulsion = 24161.768306 eV Total energy + Delta-G solvation = -4195.969897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.84632 -41.41550 -40.89419 -39.18375 -38.42586 -35.71522 -34.11332 -33.13927 -32.18650 -31.68781 -30.56065 -29.33301 -27.78038 -25.84540 -25.45663 -23.69912 -23.44542 -22.81345 -20.72922 -20.25090 -19.60583 -19.28505 -18.33647 -17.75585 -17.73239 -17.52684 -17.20211 -16.69567 -16.30137 -16.19812 -15.91079 -15.69168 -15.41374 -15.38303 -14.97118 -14.67566 -14.50967 -14.30153 -13.86745 -13.77313 -13.47449 -13.33760 -13.10088 -13.01649 -12.90949 -12.85126 -12.79555 -12.57302 -12.32618 -12.12290 -12.07958 -11.97501 -11.89559 -11.46073 -11.37719 -11.12250 -10.91777 -9.97042 -9.68680 -9.26868 -9.00976 -7.92543 -5.20405 0.10384 0.23645 1.47470 1.49800 1.50341 1.58065 1.59499 2.29865 2.57540 2.58432 3.20296 3.39448 3.40684 3.57254 3.76359 3.80053 3.86355 3.89862 3.92904 3.98710 4.09009 4.15920 4.29757 4.32378 4.43037 4.47452 4.57227 4.62319 4.64977 4.69083 4.73120 4.88177 4.96461 4.98176 5.01233 5.07924 5.19724 5.24146 5.24668 5.33676 5.41263 5.54563 5.60136 5.67436 6.20108 6.29226 6.48634 7.00248 7.36981 8.11730 8.33865 9.30710 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.002377 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.262974 B =11775.851680 C =13243.116457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 H 0.112 0.888 4 C 0.114 3.886 5 N -0.606 5.606 6 C 0.531 3.469 7 O -0.585 6.585 8 C -0.129 4.129 9 C 0.083 3.917 10 O -0.327 6.327 11 C 0.075 3.925 12 C -0.191 4.191 13 C -0.085 4.085 14 C -0.123 4.123 15 C -0.115 4.115 16 C 0.034 3.966 17 F -0.150 7.150 18 C 0.078 3.922 19 C 0.160 3.840 20 H 0.083 0.917 21 N -0.723 5.723 22 C -0.233 4.233 23 H 0.083 0.917 24 C -0.074 4.074 25 N -0.969 5.969 26 Si 0.966 3.034 27 H -0.289 1.289 28 H -0.304 1.304 29 H -0.268 1.268 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.144 0.856 40 H 0.162 0.838 41 H 0.169 0.831 42 H 0.163 0.837 43 H 0.093 0.907 44 H 0.056 0.944 45 H 0.375 0.625 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.553 7.143 -12.552 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 H 0.130 0.870 4 C -0.008 4.008 5 N -0.337 5.337 6 C 0.321 3.679 7 O -0.467 6.467 8 C -0.168 4.168 9 C 0.008 3.992 10 O -0.241 6.241 11 C 0.030 3.970 12 C -0.210 4.210 13 C -0.103 4.103 14 C -0.141 4.141 15 C -0.134 4.134 16 C 0.014 3.986 17 F -0.129 7.129 18 C -0.048 4.048 19 C 0.050 3.950 20 H 0.101 0.899 21 N -0.364 5.364 22 C -0.365 4.365 23 H 0.101 0.899 24 C -0.266 4.266 25 N -0.620 5.620 26 Si 0.796 3.204 27 H -0.216 1.216 28 H -0.231 1.231 29 H -0.193 1.193 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.142 0.858 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.161 0.839 40 H 0.179 0.821 41 H 0.187 0.813 42 H 0.181 0.819 43 H 0.111 0.889 44 H 0.075 0.925 45 H 0.209 0.791 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 20.578 7.112 -12.748 25.230 hybrid contribution -0.850 -1.094 0.999 1.708 sum 19.728 6.017 -11.749 23.737 Atomic orbital electron populations 1.21476 0.93570 1.01308 1.02019 1.22584 0.96691 0.99384 0.93133 0.87002 1.22261 0.82454 0.97797 0.98296 1.48479 1.12005 1.65152 1.08096 1.20215 0.85375 0.76622 0.85682 1.90661 1.84203 1.56053 1.15734 1.21366 0.90753 1.05427 0.99271 1.22406 0.80505 1.00685 0.95590 1.86009 1.21305 1.81997 1.34785 1.19324 0.88048 0.99364 0.90308 1.21481 1.02668 1.06193 0.90608 1.21471 0.92108 0.95629 1.01103 1.21393 0.98294 1.00007 0.94417 1.21382 0.98704 0.99963 0.93349 1.17490 0.93459 1.09420 0.78185 1.91458 1.94883 1.94599 1.31931 1.23144 1.01515 1.01937 0.78187 1.21501 0.88355 0.88747 0.96381 0.89918 1.42621 1.46129 1.34031 1.13577 1.19638 1.16930 1.08427 0.91530 0.89914 1.25471 0.99765 1.00408 1.00981 1.69806 1.28903 1.28275 1.35004 0.85246 0.77967 0.76912 0.80267 1.21613 1.23094 1.19298 0.92388 0.90993 0.94447 0.90138 0.93649 0.85810 0.87629 0.91436 0.90342 0.83870 0.82087 0.81307 0.81946 0.88934 0.92526 0.79118 0.94296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 8.85 71.98 0.64 -3.06 16 2 C -0.10 -2.75 3.51 -9.40 -0.03 -2.78 16 3 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 4 C 0.11 3.54 6.35 86.86 0.55 4.09 16 5 N -0.61 -18.75 3.33 -811.79 -2.70 -21.45 16 6 C 0.53 16.35 7.85 87.66 0.69 17.04 16 7 O -0.58 -21.02 16.24 -3.02 -0.05 -21.07 16 8 C -0.13 -3.17 5.26 29.85 0.16 -3.01 16 9 C 0.08 2.01 4.03 71.98 0.29 2.30 16 10 O -0.33 -8.71 10.00 -93.00 -0.93 -9.65 16 11 C 0.08 1.81 6.69 22.53 0.15 1.96 16 12 C -0.19 -3.58 9.04 22.36 0.20 -3.38 16 13 C -0.09 -1.11 10.04 22.26 0.22 -0.88 16 14 C -0.12 -1.39 10.04 22.28 0.22 -1.17 16 15 C -0.12 -1.77 10.02 22.30 0.22 -1.55 16 16 C 0.03 0.78 7.31 22.45 0.16 0.95 16 17 F -0.15 -4.04 17.11 44.97 0.77 -3.27 16 18 C 0.08 2.35 6.23 86.73 0.54 2.89 16 19 C 0.16 5.39 3.37 46.18 0.16 5.55 16 20 H 0.08 2.63 8.12 -2.39 -0.02 2.61 16 21 N -0.72 -32.79 4.61 -317.30 -1.46 -34.25 16 22 C -0.23 -11.91 9.98 84.03 0.84 -11.07 16 23 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 24 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 25 N -0.97 -57.60 13.06 21.65 0.28 -57.32 16 26 Si 0.97 44.71 29.55 68.60 2.03 46.74 16 27 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 28 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 29 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 30 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.35 6.38 -2.39 -0.02 1.33 16 33 H 0.08 2.32 8.04 -2.39 -0.02 2.30 16 34 H 0.05 1.63 7.99 -2.39 -0.02 1.61 16 35 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.11 2.66 8.14 -2.39 -0.02 2.65 16 37 H 0.07 1.68 7.62 -2.39 -0.02 1.67 16 38 H 0.08 1.78 7.62 -2.39 -0.02 1.76 16 39 H 0.14 2.53 6.30 -2.91 -0.02 2.51 16 40 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 41 H 0.17 0.71 8.06 -2.91 -0.02 0.68 16 42 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.06 2.01 8.04 -2.39 -0.02 1.99 16 45 H 0.38 18.82 6.10 -92.71 -0.57 18.26 16 46 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 Total: -1.00 -68.73 384.67 3.84 -64.89 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.43 Total: 31.10 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 5.48 Total: 4.28 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -3.88 Total: -113.02 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.98 Total: -30.72 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.77 Total: -3.27 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -68.73 3.84 -64.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733856498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.282 kcal (2) G-P(sol) polarization free energy of solvation -68.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds