Wall clock time and date at job start Sat Apr 11 2020 04:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47110 * 2 1 4 4 N 1.46502 * 109.47054 * 119.99779 * 2 1 3 5 5 C 1.36929 * 120.00425 * 275.00213 * 4 2 1 6 6 H 1.08007 * 119.99533 * 359.97438 * 5 4 2 7 7 C 1.38809 * 120.00290 * 180.27542 * 5 4 2 8 8 N 1.31618 * 120.00231 * 359.72610 * 7 5 4 9 9 Si 1.86804 * 120.00127 * 179.72143 * 7 5 4 10 10 H 1.48508 * 109.46787 * 59.99805 * 9 7 5 11 11 H 1.48491 * 109.47298 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46958 * 300.00021 * 9 7 5 13 13 C 1.53002 * 109.46910 * 239.99645 * 2 1 3 14 14 H 1.08994 * 109.50987 * 64.90271 * 13 2 1 15 15 C 1.53300 * 109.51177 * 184.99873 * 13 2 1 16 16 N 1.47148 * 108.38425 * 172.22872 * 15 13 2 17 17 C 1.34772 * 120.98234 * 129.44566 * 16 15 13 18 18 O 1.21617 * 120.00214 * 353.43651 * 17 16 15 19 19 C 1.47298 * 120.00200 * 173.42851 * 17 16 15 20 20 C 1.37925 * 125.89915 * 157.33154 * 19 17 16 21 21 C 1.39441 * 107.46177 * 179.84834 * 20 19 17 22 22 C 1.37935 * 107.46065 * 0.41616 * 21 20 19 23 23 C 1.47290 * 125.90043 * 179.71942 * 22 21 20 24 24 N 1.34780 * 119.99828 * 180.02562 * 23 22 21 25 25 O 1.21614 * 120.00169 * 0.02897 * 23 22 21 26 26 N 1.36752 * 108.19699 * 359.74297 * 22 21 20 27 27 H 0.96998 * 125.66306 * 179.97438 * 26 22 21 28 28 C 1.47151 * 118.03536 * 309.46262 * 16 15 13 29 29 C 1.53297 * 108.38205 * 50.54054 * 28 16 15 30 30 O 1.42959 * 109.51369 * 304.74709 * 13 2 1 31 31 H 1.09002 * 109.47371 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47610 * 300.00082 * 1 2 3 33 33 H 1.08994 * 109.47233 * 60.00051 * 1 2 3 34 34 H 0.97006 * 119.99738 * 94.99949 * 4 2 1 35 35 H 0.96994 * 120.00504 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.68138 * 291.95573 * 15 13 2 37 37 H 1.09001 * 109.67830 * 52.46679 * 15 13 2 38 38 H 1.08004 * 126.26959 * 359.97438 * 20 19 17 39 39 H 1.07997 * 126.27430 * 180.16311 * 21 20 19 40 40 H 0.97004 * 120.00041 * 0.02562 * 24 23 22 41 41 H 0.96999 * 120.00012 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.68380 * 170.26064 * 28 16 15 43 43 H 1.08994 * 109.68657 * 290.77886 * 28 16 15 44 44 H 1.08993 * 109.51706 * 67.61928 * 29 28 16 45 45 H 1.09006 * 109.51157 * 187.77512 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3758 6 1 1.8926 1.0405 2.4241 7 6 2.6172 -0.6605 3.5077 8 7 2.9303 -1.9375 3.4487 9 14 2.8029 0.2733 5.1149 10 1 1.4823 0.8104 5.5308 11 1 3.3175 -0.6435 6.1635 12 1 3.7571 1.3958 4.9278 13 6 2.0399 -0.7213 -1.2492 14 1 1.7504 -0.1599 -2.1374 15 6 3.5678 -0.8319 -1.1888 16 7 4.0154 -1.6876 -2.2990 17 6 4.9959 -1.2868 -3.1323 18 8 5.4421 -0.1585 -3.0480 19 6 5.5272 -2.2151 -4.1450 20 6 6.1749 -1.8577 -5.3091 21 6 6.5147 -3.0337 -5.9768 22 6 6.0604 -4.0891 -5.2136 23 6 6.1992 -5.5174 -5.5451 24 7 5.7079 -6.4540 -4.7096 25 8 6.7571 -5.8518 -6.5728 26 7 5.4583 -3.5800 -4.0962 27 1 5.0498 -4.1006 -3.3870 28 6 3.3606 -2.9939 -2.4728 29 6 1.8429 -2.7780 -2.4707 30 8 1.4750 -2.0333 -1.3071 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 2.2490 -1.6318 1.1526 35 1 3.2570 -2.3939 4.2397 36 1 4.0116 0.1588 -1.2869 37 1 3.8664 -1.2755 -0.2391 38 1 6.3828 -0.8513 -5.6415 39 1 7.0344 -3.1052 -6.9208 40 1 5.2627 -6.1873 -3.8901 41 1 5.7997 -7.3947 -4.9277 42 1 3.6673 -3.4351 -3.4212 43 1 3.6389 -3.6561 -1.6530 44 1 1.5526 -2.2249 -3.3639 45 1 1.3378 -3.7439 -2.4595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485646060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:42:05 Heat of formation + Delta-G solvation = -35.628505 kcal Electronic energy + Delta-G solvation = -29641.292048 eV Core-core repulsion = 25467.867435 eV Total energy + Delta-G solvation = -4173.424613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.07294 -40.16531 -39.19947 -38.26475 -35.69027 -34.77586 -34.29162 -32.42965 -31.61687 -30.49987 -29.94777 -28.47555 -27.78620 -24.75280 -24.16107 -23.62596 -22.61797 -21.18459 -20.99126 -20.13915 -19.77417 -18.55488 -17.64569 -17.34197 -17.22447 -16.48708 -16.09590 -15.82080 -15.45988 -15.18212 -14.85711 -14.78707 -14.44988 -14.24414 -14.05105 -13.93341 -13.44794 -13.36407 -13.10496 -13.02727 -12.95585 -12.46585 -12.01847 -11.93316 -11.51646 -11.31363 -10.90912 -10.83856 -10.81554 -10.57080 -10.43589 -10.28585 -10.24175 -10.00568 -9.97409 -9.64469 -9.44869 -8.98687 -8.78451 -8.50637 -6.99675 -5.80262 -3.08750 0.68449 1.86272 2.36618 2.65668 2.92689 2.94080 3.08369 3.42056 3.47044 3.47284 3.79112 4.13436 4.36924 4.53748 4.55103 4.60930 4.82678 4.88754 4.92251 5.14719 5.20656 5.35574 5.48664 5.52795 5.53514 5.58362 5.71465 5.77233 5.91153 6.02864 6.13820 6.19791 6.24858 6.33307 6.40131 6.43327 6.59971 6.63341 6.72943 6.83504 7.08159 7.14100 7.32793 7.66837 7.67861 7.89308 8.38037 9.50506 10.05813 10.42755 11.41975 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.016143 B = 0.002749 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.044064 B =10181.428913 C =10388.447386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.062 0.938 4 N -0.718 5.718 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.932 5.932 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.286 1.286 13 C 0.077 3.923 14 H 0.058 0.942 15 C 0.086 3.914 16 N -0.609 5.609 17 C 0.584 3.416 18 O -0.516 6.516 19 C 0.002 3.998 20 C -0.127 4.127 21 C -0.112 4.112 22 C -0.034 4.034 23 C 0.595 3.405 24 N -0.854 5.854 25 O -0.525 6.525 26 N -0.525 5.525 27 H 0.420 0.580 28 C 0.051 3.949 29 C 0.051 3.949 30 O -0.356 6.356 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.033 0.967 34 H 0.388 0.612 35 H 0.255 0.745 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.397 0.603 41 H 0.410 0.590 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.053 0.947 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.592 -7.315 -17.981 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.079 0.921 4 N -0.360 5.360 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.580 5.580 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 C 0.018 3.982 14 H 0.076 0.924 15 C -0.035 4.035 16 N -0.343 5.343 17 C 0.371 3.629 18 O -0.391 6.391 19 C -0.116 4.116 20 C -0.152 4.152 21 C -0.139 4.139 22 C -0.150 4.150 23 C 0.380 3.620 24 N -0.418 5.418 25 O -0.400 6.400 26 N -0.129 5.129 27 H 0.264 0.736 28 C -0.073 4.073 29 C -0.027 4.027 30 O -0.274 6.274 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.223 0.777 35 H 0.065 0.935 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.175 0.825 39 H 0.175 0.825 40 H 0.225 0.775 41 H 0.242 0.758 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.071 0.929 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.061 -6.797 -18.198 19.535 hybrid contribution -0.112 -0.451 1.478 1.549 sum 1.949 -7.249 -16.720 18.328 Atomic orbital electron populations 1.22327 0.98364 1.01609 0.99682 1.20270 0.92913 0.94679 0.84968 0.92062 1.42395 1.77739 1.10895 1.04988 1.19194 1.36555 0.93879 0.87458 0.91198 1.24707 1.02072 0.95938 0.97990 1.69646 1.50692 1.08661 1.29009 0.86296 0.77791 0.78651 0.83604 1.21302 1.21785 1.21258 1.22961 0.91409 0.84019 0.99851 0.92440 1.22554 0.95239 0.96758 0.88928 1.48162 1.36437 1.19021 1.30725 1.17243 0.79591 0.86339 0.79721 1.90852 1.59627 1.18932 1.69718 1.20686 1.08932 0.81834 1.00116 1.21315 1.00959 0.99639 0.93334 1.21317 1.02129 0.89809 1.00611 1.20534 1.09148 0.93549 0.91812 1.17147 0.77910 0.83700 0.83233 1.43738 1.62132 1.10362 1.25547 1.90887 1.42788 1.81255 1.25114 1.42715 1.44672 1.06495 1.18995 0.73647 1.22893 0.96002 0.86062 1.02350 1.22829 0.92208 0.97826 0.89877 1.88131 1.70809 1.27233 1.41259 0.92497 0.92737 0.94814 0.77694 0.93540 0.88063 0.87915 0.82481 0.82528 0.77543 0.75760 0.89596 0.89554 0.92899 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.30 37.16 0.35 -2.47 16 2 C 0.18 3.42 2.80 -67.93 -0.19 3.23 16 3 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 4 N -0.72 -16.83 4.24 -53.43 -0.23 -17.05 16 5 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 6 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 7 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 8 N -0.93 -27.05 13.06 55.49 0.72 -26.32 16 9 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.08 1.21 2.57 -26.57 -0.07 1.14 16 14 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 15 C 0.09 1.39 5.84 -3.53 -0.02 1.37 16 16 N -0.61 -8.03 3.02 -173.60 -0.52 -8.55 16 17 C 0.58 8.22 7.66 -12.58 -0.10 8.13 16 18 O -0.52 -9.07 16.43 5.26 0.09 -8.99 16 19 C 0.00 0.02 6.40 -82.10 -0.53 -0.51 16 20 C -0.13 -1.35 10.68 -39.25 -0.42 -1.77 16 21 C -0.11 -1.11 10.60 -39.24 -0.42 -1.53 16 22 C -0.03 -0.32 7.04 -82.10 -0.58 -0.90 16 23 C 0.59 5.44 8.08 -12.58 -0.10 5.33 16 24 N -0.85 -4.24 8.87 30.40 0.27 -3.97 16 25 O -0.53 -6.75 17.71 5.27 0.09 -6.65 16 26 N -0.53 -4.36 4.69 -5.89 -0.03 -4.39 16 27 H 0.42 2.46 5.44 -40.82 -0.22 2.23 16 28 C 0.05 0.48 5.40 -3.53 -0.02 0.47 16 29 C 0.05 0.53 6.98 37.31 0.26 0.79 16 30 O -0.36 -5.41 9.24 -35.23 -0.33 -5.73 16 31 H 0.06 1.05 7.57 -51.93 -0.39 0.66 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.39 9.77 7.08 -40.82 -0.29 9.48 16 35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.10 1.74 7.06 -51.93 -0.37 1.37 16 37 H 0.10 1.96 6.94 -51.93 -0.36 1.60 16 38 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 39 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.40 0.99 7.93 -40.82 -0.32 0.67 16 41 H 0.41 1.53 8.93 -40.82 -0.36 1.17 16 42 H 0.09 0.59 4.40 -51.93 -0.23 0.36 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -34.51 371.45 -7.33 -41.84 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.90 Total: 10.96 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -2.07 Total: 6.40 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.22 Total: -60.28 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.15 Total: -21.37 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.51 -7.33 -41.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485646060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.210 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds