Wall clock time and date at job start Sat Apr 11 2020 04:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47375 * 2 1 4 4 N 1.46499 * 109.46923 * 240.00146 * 2 1 3 5 5 C 1.36936 * 120.00099 * 85.00101 * 4 2 1 6 6 H 1.08007 * 120.00042 * 359.97438 * 5 4 2 7 7 C 1.38817 * 120.00277 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99730 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99966 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46733 * 269.99795 * 9 7 5 11 11 H 1.48500 * 109.47349 * 29.99897 * 9 7 5 12 12 H 1.48500 * 109.46709 * 150.00275 * 9 7 5 13 13 C 1.53000 * 109.47095 * 120.00161 * 2 1 3 14 14 H 1.08999 * 109.51295 * 299.89817 * 13 2 1 15 15 C 1.53298 * 109.50965 * 179.74353 * 13 2 1 16 16 N 1.47155 * 108.38143 * 187.77500 * 15 13 2 17 17 C 1.34774 * 120.98015 * 230.51481 * 16 15 13 18 18 O 1.21610 * 120.00133 * 359.63590 * 17 16 15 19 19 C 1.47303 * 119.99825 * 179.63275 * 17 16 15 20 20 C 1.37928 * 125.90030 * 207.53545 * 19 17 16 21 21 C 1.39441 * 107.46013 * 179.84346 * 20 19 17 22 22 C 1.37925 * 107.46222 * 0.42096 * 21 20 19 23 23 C 1.47299 * 125.90127 * 179.71963 * 22 21 20 24 24 N 1.34774 * 119.99947 * 180.02562 * 23 22 21 25 25 O 1.21613 * 119.99666 * 0.02562 * 23 22 21 26 26 N 1.36752 * 108.20097 * 359.73681 * 22 21 20 27 27 H 0.96999 * 125.66355 * 179.97438 * 26 22 21 28 28 C 1.47146 * 118.03684 * 50.53544 * 16 15 13 29 29 C 1.53296 * 108.38803 * 309.46500 * 28 16 15 30 30 O 1.42964 * 109.21960 * 52.30130 * 29 28 16 31 31 H 1.09001 * 109.47086 * 59.99708 * 1 2 3 32 32 H 1.08999 * 109.47375 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46965 * 300.00093 * 1 2 3 34 34 H 0.97002 * 120.00253 * 264.99858 * 4 2 1 35 35 H 0.97000 * 119.99887 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.68641 * 307.49457 * 15 13 2 37 37 H 1.09002 * 109.68324 * 68.05281 * 15 13 2 38 38 H 1.08010 * 126.26993 * 0.02562 * 20 19 17 39 39 H 1.08000 * 126.26617 * 180.13931 * 21 20 19 40 40 H 0.97001 * 120.00392 * 359.97438 * 24 23 22 41 41 H 0.97003 * 119.99913 * 180.02562 * 24 23 22 42 42 H 1.09004 * 109.68381 * 189.73916 * 28 16 15 43 43 H 1.09003 * 109.68253 * 69.19030 * 28 16 15 44 44 H 1.08996 * 109.50999 * 292.37813 * 29 28 16 45 45 H 1.08999 * 109.55593 * 172.24860 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8918 1.0404 -2.4243 7 6 2.6122 -0.6616 -3.5091 8 7 2.9252 -1.9387 -3.4500 9 14 2.7913 0.2705 -5.1180 10 1 1.5239 0.1794 -5.8865 11 1 3.0961 1.6957 -4.8331 12 1 3.8962 -0.3227 -5.9133 13 6 2.0400 -0.7213 1.2492 14 1 1.6785 -0.2070 2.1397 15 6 3.5730 -0.7274 1.2469 16 7 4.0353 -1.5831 2.3512 17 6 4.9544 -1.1419 3.2327 18 8 5.4193 -0.0240 3.1182 19 6 5.3958 -2.0138 4.3349 20 6 5.8700 -1.5921 5.5595 21 6 6.1715 -2.7306 6.3060 22 6 5.8853 -3.8280 5.5211 23 6 6.0599 -5.2377 5.9107 24 7 5.7412 -6.2205 5.0452 25 8 6.4917 -5.5148 7.0133 26 7 5.4119 -3.3811 4.3185 27 1 5.1340 -3.9411 3.5767 28 6 3.4648 -2.9347 2.4644 29 6 1.9371 -2.8211 2.4074 30 8 1.5639 -2.0693 1.2500 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2490 -1.6318 -1.1527 35 1 3.2492 -2.3958 -4.2419 36 1 3.9371 -1.1231 0.2988 37 1 3.9444 0.2875 1.3886 38 1 5.9839 -0.5676 5.8823 39 1 6.5623 -2.7495 7.3127 40 1 5.3964 -5.9994 4.1658 41 1 5.8558 -7.1488 5.3019 42 1 3.7645 -3.3815 3.4124 43 1 3.8180 -3.5526 1.6389 44 1 1.5760 -2.3147 3.3025 45 1 1.4990 -3.8176 2.3511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485646062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:42:08 Heat of formation + Delta-G solvation = -34.690594 kcal Electronic energy + Delta-G solvation = -29624.410551 eV Core-core repulsion = 25451.026609 eV Total energy + Delta-G solvation = -4173.383942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.09302 -40.16864 -39.20490 -38.27404 -35.68508 -34.76068 -34.30165 -32.44317 -31.64711 -30.51194 -29.94645 -28.48568 -27.77584 -24.76287 -24.18019 -23.61225 -22.60791 -21.19714 -21.00622 -20.14434 -19.80357 -18.56323 -17.65226 -17.33275 -17.23656 -16.49711 -16.13583 -15.78082 -15.44603 -15.22765 -14.87137 -14.77874 -14.44749 -14.25274 -14.03946 -13.95026 -13.44367 -13.37116 -13.09738 -13.03852 -12.96805 -12.47400 -12.00213 -11.94975 -11.52387 -11.29412 -10.90808 -10.85522 -10.82263 -10.59457 -10.43732 -10.29444 -10.22617 -10.01019 -9.95881 -9.64229 -9.45500 -8.98841 -8.78934 -8.51726 -6.98800 -5.79711 -3.08082 0.68770 1.86071 2.34337 2.62947 2.91725 2.92967 3.06356 3.41547 3.47504 3.48341 3.79161 4.11177 4.36108 4.53350 4.55563 4.61158 4.83391 4.87936 4.92480 5.13903 5.20344 5.35102 5.49559 5.52192 5.54084 5.58356 5.69971 5.76149 5.91249 6.02197 6.12502 6.18290 6.23765 6.33059 6.39089 6.41884 6.59100 6.62019 6.71860 6.82330 7.06928 7.12777 7.32842 7.67102 7.67714 7.88159 8.38707 9.51322 10.07111 10.44302 11.42563 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.017017 B = 0.002705 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.003232 B =10349.463736 C =10523.214730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.182 3.818 3 H 0.062 0.938 4 N -0.717 5.717 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.282 1.282 12 H -0.292 1.292 13 C 0.077 3.923 14 H 0.057 0.943 15 C 0.086 3.914 16 N -0.607 5.607 17 C 0.583 3.417 18 O -0.517 6.517 19 C 0.003 3.997 20 C -0.128 4.128 21 C -0.111 4.111 22 C -0.035 4.035 23 C 0.595 3.405 24 N -0.854 5.854 25 O -0.525 6.525 26 N -0.525 5.525 27 H 0.421 0.579 28 C 0.050 3.950 29 C 0.051 3.949 30 O -0.355 6.355 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.033 0.967 34 H 0.389 0.611 35 H 0.254 0.746 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.397 0.603 41 H 0.410 0.590 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.893 -7.029 18.311 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.072 3.928 3 H 0.079 0.921 4 N -0.360 5.360 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.207 1.207 12 H -0.219 1.219 13 C 0.018 3.982 14 H 0.075 0.925 15 C -0.035 4.035 16 N -0.341 5.341 17 C 0.370 3.630 18 O -0.391 6.391 19 C -0.114 4.114 20 C -0.154 4.154 21 C -0.138 4.138 22 C -0.151 4.151 23 C 0.380 3.620 24 N -0.418 5.418 25 O -0.400 6.400 26 N -0.129 5.129 27 H 0.264 0.736 28 C -0.074 4.074 29 C -0.028 4.028 30 O -0.273 6.273 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.224 0.776 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.175 0.825 39 H 0.175 0.825 40 H 0.224 0.776 41 H 0.242 0.758 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.071 0.929 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.315 -6.481 18.554 19.789 hybrid contribution -0.008 -0.501 -1.504 1.585 sum 2.306 -6.982 17.050 18.568 Atomic orbital electron populations 1.22352 0.98425 1.01570 0.99742 1.20266 0.92833 0.94701 0.85036 0.92065 1.42381 1.77700 1.10967 1.04922 1.19245 1.36505 0.93863 0.87391 0.91167 1.24713 1.02158 0.95935 0.97964 1.69665 1.50835 1.08647 1.28793 0.86222 0.77246 0.78876 0.84038 1.21792 1.20745 1.21872 1.22969 0.92006 0.83317 0.99920 0.92462 1.22550 0.95116 0.96595 0.89227 1.48173 1.41135 1.15614 1.29168 1.17253 0.79426 0.86126 0.80220 1.90855 1.55986 1.19456 1.72849 1.20676 1.10511 0.81776 0.98443 1.21304 1.02475 0.99831 0.91786 1.21311 1.02583 0.89611 1.00259 1.20529 1.12357 0.94030 0.88222 1.17145 0.77021 0.83444 0.84372 1.43736 1.69469 1.10045 1.18537 1.90888 1.45230 1.83014 1.20909 1.42743 1.49655 1.06603 1.13939 0.73588 1.22934 0.97045 0.84779 1.02639 1.22833 0.91989 0.97919 0.90031 1.88133 1.75000 1.23781 1.40414 0.92674 0.92570 0.94797 0.77595 0.93610 0.88030 0.88103 0.82508 0.82524 0.77555 0.75759 0.89603 0.89413 0.92929 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.35 37.16 0.35 -2.48 16 2 C 0.18 3.42 2.74 -67.93 -0.19 3.23 16 3 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 4 N -0.72 -16.87 4.28 -53.42 -0.23 -17.10 16 5 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 6 H 0.07 1.82 7.83 -52.48 -0.41 1.40 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.11 13.06 55.49 0.72 -26.39 16 9 Si 0.90 21.92 29.55 -169.99 -5.02 16.89 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 C 0.08 1.21 2.53 -26.58 -0.07 1.14 16 14 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 15 C 0.09 1.38 5.86 -3.53 -0.02 1.36 16 16 N -0.61 -7.95 3.02 -173.59 -0.52 -8.48 16 17 C 0.58 8.13 7.66 -12.58 -0.10 8.03 16 18 O -0.52 -9.02 16.46 5.27 0.09 -8.93 16 19 C 0.00 0.04 6.39 -82.10 -0.52 -0.49 16 20 C -0.13 -1.35 10.71 -39.25 -0.42 -1.77 16 21 C -0.11 -1.09 10.60 -39.25 -0.42 -1.50 16 22 C -0.04 -0.32 7.04 -82.10 -0.58 -0.90 16 23 C 0.59 5.36 8.08 -12.58 -0.10 5.26 16 24 N -0.85 -4.12 8.87 30.40 0.27 -3.85 16 25 O -0.53 -6.69 17.71 5.27 0.09 -6.60 16 26 N -0.53 -4.27 4.67 -5.89 -0.03 -4.30 16 27 H 0.42 2.37 5.52 -40.82 -0.23 2.14 16 28 C 0.05 0.48 5.66 -3.54 -0.02 0.46 16 29 C 0.05 0.53 6.99 37.31 0.26 0.79 16 30 O -0.36 -5.45 9.22 -35.23 -0.32 -5.78 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.03 7.68 -51.93 -0.40 0.64 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.39 9.85 7.20 -40.82 -0.29 9.56 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.10 1.92 7.26 -51.93 -0.38 1.55 16 37 H 0.10 1.70 7.08 -51.93 -0.37 1.33 16 38 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.40 0.93 7.93 -40.82 -0.32 0.61 16 41 H 0.41 1.48 8.93 -40.82 -0.36 1.12 16 42 H 0.09 0.59 4.06 -51.93 -0.21 0.38 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 372.04 15.07 5.61 5.61 Total: -1.00 -34.70 372.04 -7.33 -42.02 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -5.91 Total: 10.66 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -2.07 Total: 6.24 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.21 Total: -60.11 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.14 Total: -21.31 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.70 -7.33 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485646062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.333 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds