Wall clock time and date at job start Sat Apr 11 2020 04:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46873 * 2 1 4 4 N 1.46506 * 109.47063 * 240.00043 * 2 1 3 5 5 C 1.36931 * 119.99543 * 85.00214 * 4 2 1 6 6 H 1.08001 * 120.00645 * 359.97438 * 5 4 2 7 7 C 1.38820 * 119.99572 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99906 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99927 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46855 * 90.00253 * 9 7 5 11 11 H 1.48498 * 109.46912 * 209.99940 * 9 7 5 12 12 H 1.48498 * 109.46961 * 329.99962 * 9 7 5 13 13 C 1.53002 * 109.47043 * 120.00236 * 2 1 3 14 14 H 1.08996 * 109.55339 * 175.12598 * 13 2 1 15 15 C 1.53716 * 109.44244 * 295.38737 * 13 2 1 16 16 N 1.47156 * 108.16043 * 172.37200 * 15 13 2 17 17 C 1.34771 * 120.97768 * 129.43505 * 16 15 13 18 18 O 1.21615 * 120.00414 * 0.06713 * 17 16 15 19 19 C 1.47295 * 120.00084 * 180.02562 * 17 16 15 20 20 C 1.37932 * 125.90183 * 152.18012 * 19 17 16 21 21 C 1.39450 * 107.45770 * 180.24392 * 20 19 17 22 22 C 1.37934 * 107.46229 * 359.57621 * 21 20 19 23 23 C 1.47298 * 125.89842 * 180.16069 * 22 21 20 24 24 N 1.34776 * 119.99641 * 180.31238 * 23 22 21 25 25 O 1.21605 * 120.00107 * 0.31361 * 23 22 21 26 26 N 1.36755 * 125.89531 * 332.15979 * 19 17 16 27 27 H 0.96999 * 125.66427 * 0.03713 * 26 19 17 28 28 C 1.47151 * 118.03736 * 309.15876 * 16 15 13 29 29 C 1.53297 * 108.38452 * 50.78642 * 28 16 15 30 30 O 1.42962 * 109.22168 * 307.69770 * 29 28 16 31 31 H 1.09000 * 109.46873 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47262 * 299.99858 * 1 2 3 33 33 H 1.09003 * 109.46877 * 60.00458 * 1 2 3 34 34 H 0.96998 * 119.99630 * 265.00170 * 4 2 1 35 35 H 0.97001 * 119.99902 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.83646 * 52.69534 * 15 13 2 37 37 H 1.08991 * 109.74752 * 292.00441 * 15 13 2 38 38 H 1.07996 * 126.26958 * 359.97438 * 20 19 17 39 39 H 1.07993 * 126.26617 * 179.73787 * 21 20 19 40 40 H 0.97000 * 120.00409 * 0.02562 * 24 23 22 41 41 H 0.97001 * 119.99784 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.67793 * 170.50964 * 28 16 15 43 43 H 1.08997 * 109.68144 * 291.06602 * 28 16 15 44 44 H 1.09005 * 109.51234 * 67.61618 * 29 28 16 45 45 H 1.08997 * 109.51300 * 187.77056 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0074 -2.3757 6 1 1.8920 1.0404 -2.4243 7 6 2.6124 -0.6617 -3.5090 8 7 2.9263 -1.9385 -3.4497 9 14 2.7902 0.2701 -5.1183 10 1 4.1520 0.8560 -5.2031 11 1 2.5805 -0.6616 -6.2555 12 1 1.7793 1.3564 -5.1755 13 6 2.0400 -0.7213 1.2492 14 1 3.1265 -0.7983 1.2080 15 6 1.6247 0.0679 2.5012 16 7 1.9647 -0.7375 3.6849 17 6 2.6672 -0.2078 4.7058 18 8 3.0289 0.9523 4.6579 19 6 2.9963 -1.0338 5.8802 20 6 4.0887 -0.8674 6.7057 21 6 4.0272 -1.8575 7.6857 22 6 2.8931 -2.6057 7.4476 23 6 2.4346 -3.7566 8.2444 24 7 1.3065 -4.4084 7.8995 25 8 3.0739 -4.1186 9.2134 26 7 2.2711 -2.0979 6.3405 27 1 1.4517 -2.4366 5.9470 28 6 1.5097 -2.1363 3.7237 29 6 1.9261 -2.8166 2.4145 30 8 1.4705 -2.0312 1.3103 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 2.2490 -1.6318 -1.1526 35 1 3.2497 -2.3958 -4.2417 36 1 0.5511 0.2556 2.4809 37 1 2.1628 1.0152 2.5347 38 1 4.8540 -0.1117 6.6080 39 1 4.7361 -2.0090 8.4862 40 1 0.7967 -4.1198 7.1263 41 1 1.0048 -5.1665 8.4239 42 1 1.9718 -2.6493 4.5671 43 1 0.4248 -2.1668 3.8243 44 1 3.0122 -2.9012 2.3775 45 1 1.4809 -3.8102 2.3629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485646064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:42:12 Heat of formation + Delta-G solvation = -33.660130 kcal Electronic energy + Delta-G solvation = -29332.790279 eV Core-core repulsion = 25159.451021 eV Total energy + Delta-G solvation = -4173.339258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.18538 -40.28293 -39.27646 -38.36746 -35.73141 -34.80116 -34.37887 -32.66446 -31.69980 -30.58174 -30.02843 -28.60949 -27.36282 -25.11535 -24.36360 -23.63454 -22.61658 -21.29610 -21.14115 -20.23586 -19.75366 -18.67526 -17.74418 -17.36112 -17.20248 -16.63110 -16.12037 -15.97477 -15.50084 -15.38705 -14.99717 -14.80574 -14.54899 -14.35486 -14.10780 -14.05950 -13.48797 -13.39015 -13.16451 -13.10501 -12.90057 -12.65008 -12.27325 -12.10596 -11.47062 -11.24159 -10.93764 -10.89450 -10.78086 -10.68263 -10.45234 -10.36712 -10.26433 -10.05332 -9.94330 -9.70604 -9.52926 -8.93819 -8.89457 -8.64173 -6.98119 -5.77389 -3.06452 0.59641 1.77373 2.24534 2.45704 2.83945 2.85516 2.94939 3.42738 3.48082 3.49554 3.76303 3.99522 4.28009 4.41509 4.49103 4.58183 4.73876 4.79212 4.83235 4.98221 5.15299 5.22686 5.43983 5.50072 5.51463 5.55207 5.65662 5.69174 5.82344 5.90289 5.94944 6.05703 6.15698 6.20611 6.33577 6.37924 6.52582 6.56990 6.74104 6.74811 6.95001 7.08373 7.31988 7.60131 7.68284 7.73071 8.40626 9.52735 10.09244 10.45672 11.44965 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.022677 B = 0.002378 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.413493 B =11769.971269 C =12147.308281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.185 3.815 3 H 0.061 0.939 4 N -0.719 5.719 5 C -0.240 4.240 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.075 3.925 14 H 0.067 0.933 15 C 0.083 3.917 16 N -0.609 5.609 17 C 0.585 3.415 18 O -0.515 6.515 19 C 0.000 4.000 20 C -0.125 4.125 21 C -0.110 4.110 22 C -0.034 4.034 23 C 0.595 3.405 24 N -0.854 5.854 25 O -0.523 6.523 26 N -0.526 5.526 27 H 0.420 0.580 28 C 0.051 3.949 29 C 0.048 3.952 30 O -0.355 6.355 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.053 0.947 34 H 0.389 0.611 35 H 0.255 0.745 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.396 0.604 41 H 0.411 0.589 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.114 -4.175 23.045 23.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.074 3.926 3 H 0.079 0.921 4 N -0.360 5.360 5 C -0.371 4.371 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.016 3.984 14 H 0.085 0.915 15 C -0.039 4.039 16 N -0.343 5.343 17 C 0.372 3.628 18 O -0.390 6.390 19 C -0.117 4.117 20 C -0.151 4.151 21 C -0.137 4.137 22 C -0.150 4.150 23 C 0.380 3.620 24 N -0.418 5.418 25 O -0.398 6.398 26 N -0.131 5.131 27 H 0.263 0.737 28 C -0.073 4.073 29 C -0.030 4.030 30 O -0.273 6.273 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.223 0.777 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.176 0.824 39 H 0.176 0.824 40 H 0.223 0.777 41 H 0.243 0.757 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.657 -3.651 23.253 23.994 hybrid contribution -0.543 -0.280 -1.111 1.268 sum -5.200 -3.931 22.142 23.081 Atomic orbital electron populations 1.22428 0.98656 1.01587 0.99618 1.20200 0.92833 0.94675 0.84876 0.92147 1.42344 1.77874 1.10936 1.04875 1.19241 1.36707 0.93880 0.87316 0.91130 1.24746 1.02100 0.95962 0.98061 1.69676 1.50677 1.08657 1.28870 0.86201 0.77803 0.78591 0.83657 1.21721 1.21807 1.20753 1.23118 0.97846 0.82803 0.94669 0.91531 1.22690 1.02169 0.95840 0.83168 1.48127 1.54479 1.12412 1.19276 1.17256 0.78129 0.86204 0.81177 1.90861 1.52714 1.15858 1.79536 1.20610 0.97807 0.93251 1.00019 1.21335 0.98199 1.00866 0.94673 1.21337 0.96721 0.95086 1.00537 1.20542 0.99174 1.01401 0.93837 1.17139 0.80447 0.81051 0.83381 1.43728 1.27218 1.36475 1.34397 1.90894 1.55568 1.66234 1.27115 1.42704 1.22554 1.24847 1.22952 0.73717 1.22960 1.00779 0.82450 1.01103 1.22856 0.99890 0.95160 0.85087 1.88126 1.67648 1.25777 1.45723 0.92473 0.94697 0.92788 0.77689 0.93537 0.89670 0.87715 0.82417 0.82436 0.77662 0.75727 0.89413 0.89830 0.92456 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.06 37.16 0.34 -2.48 16 2 C 0.18 3.51 2.77 -67.92 -0.19 3.32 16 3 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 4 N -0.72 -17.66 5.10 -53.42 -0.27 -17.93 16 5 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 9 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 C 0.07 1.19 2.62 -26.36 -0.07 1.12 16 14 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 15 C 0.08 1.09 5.84 -3.31 -0.02 1.07 16 16 N -0.61 -6.82 3.01 -173.33 -0.52 -7.34 16 17 C 0.58 7.27 7.66 -12.58 -0.10 7.18 16 18 O -0.52 -8.17 16.46 5.26 0.09 -8.09 16 19 C 0.00 0.00 6.39 -82.10 -0.52 -0.52 16 20 C -0.12 -1.23 10.71 -39.24 -0.42 -1.65 16 21 C -0.11 -1.01 10.60 -39.24 -0.42 -1.42 16 22 C -0.03 -0.28 7.04 -82.10 -0.58 -0.85 16 23 C 0.59 4.86 8.08 -12.58 -0.10 4.76 16 24 N -0.85 -3.25 8.87 30.40 0.27 -2.98 16 25 O -0.52 -6.32 17.71 5.27 0.09 -6.23 16 26 N -0.53 -3.63 4.67 -5.89 -0.03 -3.66 16 27 H 0.42 1.68 5.52 -40.82 -0.23 1.45 16 28 C 0.05 0.40 5.65 -3.53 -0.02 0.38 16 29 C 0.05 0.51 6.99 37.31 0.26 0.77 16 30 O -0.35 -5.42 9.24 -35.23 -0.33 -5.74 16 31 H 0.06 1.04 7.56 -51.93 -0.39 0.64 16 32 H 0.03 0.49 6.41 -51.93 -0.33 0.15 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.39 10.34 7.58 -40.82 -0.31 10.03 16 35 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.09 1.03 6.28 -51.93 -0.33 0.70 16 37 H 0.10 1.46 7.08 -51.93 -0.37 1.09 16 38 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.40 0.42 7.93 -40.82 -0.32 0.09 16 41 H 0.41 1.10 8.93 -40.82 -0.36 0.74 16 42 H 0.09 0.50 4.06 -51.93 -0.21 0.29 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -36.02 370.24 -7.28 -43.30 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.78 Total: 8.59 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -2.08 Total: 4.51 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.17 Total: -59.09 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.15 Total: -20.06 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.02 -7.28 -43.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485646064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.640 kcal (2) G-P(sol) polarization free energy of solvation -36.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds