Wall clock time and date at job start Sat Apr 11 2020 04:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46882 * 2 1 4 4 N 1.46497 * 109.47137 * 120.00020 * 2 1 3 5 5 C 1.36941 * 120.00267 * 274.99846 * 4 2 1 6 6 H 1.07995 * 119.99471 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00220 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99916 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47042 * 60.00019 * 9 7 5 11 11 H 1.48500 * 109.46797 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47150 * 299.99944 * 9 7 5 13 13 C 1.53002 * 109.47364 * 240.00159 * 2 1 3 14 14 H 1.08994 * 109.51478 * 185.09933 * 13 2 1 15 15 C 1.53299 * 109.50990 * 64.99451 * 13 2 1 16 16 N 1.47154 * 108.38390 * 187.77393 * 15 13 2 17 17 C 1.34776 * 120.98608 * 230.56254 * 16 15 13 18 18 O 1.21616 * 119.99589 * 359.64134 * 17 16 15 19 19 C 1.47297 * 120.00214 * 179.64463 * 17 16 15 20 20 C 1.37928 * 125.89715 * 207.51410 * 19 17 16 21 21 C 1.39448 * 107.45776 * 179.84010 * 20 19 17 22 22 C 1.37931 * 107.45806 * 0.41865 * 21 20 19 23 23 C 1.47302 * 125.89564 * 179.71383 * 22 21 20 24 24 N 1.34779 * 119.99626 * 180.02562 * 23 22 21 25 25 O 1.21616 * 120.00009 * 0.03181 * 23 22 21 26 26 N 1.36746 * 125.89827 * 27.82269 * 19 17 16 27 27 H 0.97003 * 125.66451 * 0.03990 * 26 19 17 28 28 C 1.47154 * 118.03543 * 50.53913 * 16 15 13 29 29 C 1.53303 * 108.38407 * 309.46695 * 28 16 15 30 30 O 1.42962 * 109.50888 * 305.25467 * 13 2 1 31 31 H 1.09007 * 109.46882 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47296 * 299.99971 * 1 2 3 33 33 H 1.08994 * 109.47215 * 60.00045 * 1 2 3 34 34 H 0.97000 * 119.99912 * 95.00382 * 4 2 1 35 35 H 0.97000 * 119.99860 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.68448 * 307.49929 * 15 13 2 37 37 H 1.09002 * 109.67705 * 68.05623 * 15 13 2 38 38 H 1.07998 * 126.27262 * 0.02562 * 20 19 17 39 39 H 1.07997 * 126.26680 * 180.13980 * 21 20 19 40 40 H 0.96994 * 120.00232 * 359.97438 * 24 23 22 41 41 H 0.97003 * 119.99623 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.67833 * 69.18263 * 28 16 15 43 43 H 1.08998 * 109.68655 * 189.74203 * 28 16 15 44 44 H 1.09000 * 109.51319 * 172.22589 * 29 28 16 45 45 H 1.09005 * 109.50679 * 292.32351 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3758 6 1 1.8919 1.0403 2.4243 7 6 2.6124 -0.6617 3.5090 8 7 2.9254 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.4674 0.8057 5.5288 11 1 3.2992 -0.6485 6.1683 12 1 3.7445 1.3931 4.9372 13 6 2.0401 -0.7212 -1.2493 14 1 3.1262 -0.8014 -1.2055 15 6 1.6349 0.0698 -2.4984 16 7 1.9697 -0.7333 -3.6851 17 6 2.6771 -0.2050 -4.7034 18 8 3.0431 0.9537 -4.6527 19 6 3.0070 -1.0309 -5.8776 20 6 4.0993 -0.8636 -6.7030 21 6 4.0378 -1.8527 -7.6840 22 6 2.9039 -2.6012 -7.4465 23 6 2.4440 -3.7498 -8.2459 24 7 1.3126 -4.3980 -7.9052 25 8 3.0854 -4.1131 -9.2132 26 7 2.2800 -2.0923 -6.3411 27 1 1.4579 -2.4282 -5.9509 28 6 1.5099 -2.1305 -3.7270 29 6 1.9210 -2.8143 -2.4179 30 8 1.4659 -2.0289 -1.3135 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 2.2491 -1.6317 1.1525 35 1 3.2494 -2.3959 4.2417 36 1 0.5627 0.2648 -2.4777 37 1 2.1797 1.0134 -2.5280 38 1 4.8639 -0.1071 -6.6054 39 1 4.7457 -2.0021 -8.4858 40 1 0.8013 -4.1085 -7.1335 41 1 1.0100 -5.1546 -8.4315 42 1 0.4251 -2.1570 -3.8299 43 1 1.9718 -2.6440 -4.5702 44 1 1.4721 -3.8064 -2.3688 45 1 3.0067 -2.9037 -2.3793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485646066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:42:16 Heat of formation + Delta-G solvation = -33.549386 kcal Electronic energy + Delta-G solvation = -29333.320711 eV Core-core repulsion = 25159.986255 eV Total energy + Delta-G solvation = -4173.334456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.18720 -40.28855 -39.27756 -38.37001 -35.73242 -34.80093 -34.37847 -32.67189 -31.70048 -30.58706 -30.02918 -28.60959 -27.37651 -25.11110 -24.36487 -23.63478 -22.61463 -21.29344 -21.13890 -20.23589 -19.75436 -18.67455 -17.74384 -17.36098 -17.20160 -16.63535 -16.12219 -15.97816 -15.50222 -15.38725 -14.99315 -14.80508 -14.54887 -14.35745 -14.10898 -14.06023 -13.48637 -13.39288 -13.16305 -13.10448 -12.90176 -12.64648 -12.27464 -12.10338 -11.46961 -11.24100 -10.92934 -10.88848 -10.78242 -10.67716 -10.45522 -10.36697 -10.27926 -10.05380 -9.95411 -9.70202 -9.52877 -8.93193 -8.89581 -8.64271 -6.98099 -5.77112 -3.06284 0.59647 1.77391 2.24455 2.45472 2.84062 2.85405 2.95159 3.43408 3.47995 3.48776 3.76292 3.99515 4.27989 4.41467 4.49326 4.58286 4.73905 4.79211 4.83322 4.99289 5.15137 5.22657 5.44012 5.50068 5.51481 5.55283 5.65738 5.69187 5.82514 5.90426 5.94982 6.05722 6.15682 6.20687 6.33589 6.37948 6.52579 6.57149 6.74103 6.74889 6.95037 7.08475 7.31992 7.60116 7.67960 7.73084 8.40955 9.52908 10.09404 10.45787 11.45178 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.022669 B = 0.002378 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.875196 B =11769.630250 C =12145.334968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.185 3.815 3 H 0.061 0.939 4 N -0.719 5.719 5 C -0.241 4.241 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.075 3.925 14 H 0.066 0.934 15 C 0.083 3.917 16 N -0.609 5.609 17 C 0.585 3.415 18 O -0.515 6.515 19 C 0.000 4.000 20 C -0.125 4.125 21 C -0.110 4.110 22 C -0.034 4.034 23 C 0.594 3.406 24 N -0.854 5.854 25 O -0.523 6.523 26 N -0.526 5.526 27 H 0.420 0.580 28 C 0.051 3.949 29 C 0.048 3.952 30 O -0.355 6.355 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.034 0.966 34 H 0.389 0.611 35 H 0.255 0.745 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.396 0.604 41 H 0.411 0.589 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.076 -4.164 -23.046 23.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.074 3.926 3 H 0.078 0.922 4 N -0.360 5.360 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.212 1.212 13 C 0.015 3.985 14 H 0.084 0.916 15 C -0.039 4.039 16 N -0.343 5.343 17 C 0.372 3.628 18 O -0.390 6.390 19 C -0.117 4.117 20 C -0.151 4.151 21 C -0.137 4.137 22 C -0.150 4.150 23 C 0.380 3.620 24 N -0.418 5.418 25 O -0.398 6.398 26 N -0.131 5.131 27 H 0.263 0.737 28 C -0.073 4.073 29 C -0.030 4.030 30 O -0.273 6.273 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.223 0.777 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.176 0.824 39 H 0.176 0.824 40 H 0.223 0.777 41 H 0.243 0.757 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.124 0.876 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.608 -3.646 -23.250 23.982 hybrid contribution -0.556 -0.270 1.110 1.270 sum -5.164 -3.916 -22.141 23.070 Atomic orbital electron populations 1.22426 0.98657 1.01591 0.99612 1.20195 0.92831 0.94668 0.84866 0.92152 1.42337 1.77887 1.10936 1.04859 1.19195 1.36835 0.93868 0.87331 0.91185 1.24742 1.02070 0.95964 0.98050 1.69664 1.50602 1.08652 1.28980 0.86276 0.77786 0.78609 0.83552 1.21274 1.21725 1.21243 1.23033 0.97853 0.82878 0.94702 0.91565 1.22600 1.02270 0.95861 0.83139 1.48123 1.54286 1.12612 1.19254 1.17257 0.78122 0.86188 0.81195 1.90861 1.52697 1.15942 1.79465 1.20605 0.97764 0.93326 0.99993 1.21334 0.98248 1.00861 0.94626 1.21337 0.96771 0.95055 1.00520 1.20539 0.99124 1.01420 0.93868 1.17145 0.80474 0.81037 0.83368 1.43726 1.26914 1.36680 1.34494 1.90897 1.55601 1.66075 1.27242 1.42701 1.22301 1.25000 1.23050 0.73711 1.22962 1.00745 0.82496 1.01099 1.22857 0.99926 0.95139 0.85089 1.88127 1.67401 1.25954 1.45774 0.92468 0.92790 0.94702 0.77692 0.93481 0.89687 0.87712 0.82413 0.82434 0.77662 0.75726 0.89821 0.89412 0.87646 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.06 37.16 0.34 -2.48 16 2 C 0.19 3.52 2.77 -67.93 -0.19 3.33 16 3 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 4 N -0.72 -17.66 5.10 -53.42 -0.27 -17.94 16 5 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 9 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.07 1.18 2.61 -26.58 -0.07 1.11 16 14 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 15 C 0.08 1.09 5.82 -3.53 -0.02 1.07 16 16 N -0.61 -6.83 3.02 -173.58 -0.52 -7.35 16 17 C 0.58 7.28 7.66 -12.58 -0.10 7.18 16 18 O -0.52 -8.18 16.46 5.26 0.09 -8.09 16 19 C 0.00 0.00 6.39 -82.11 -0.52 -0.52 16 20 C -0.12 -1.23 10.71 -39.24 -0.42 -1.65 16 21 C -0.11 -1.01 10.60 -39.24 -0.42 -1.42 16 22 C -0.03 -0.28 7.04 -82.10 -0.58 -0.85 16 23 C 0.59 4.86 8.08 -12.57 -0.10 4.76 16 24 N -0.85 -3.25 8.87 30.40 0.27 -2.98 16 25 O -0.52 -6.32 17.71 5.26 0.09 -6.23 16 26 N -0.53 -3.63 4.67 -5.89 -0.03 -3.66 16 27 H 0.42 1.68 5.53 -40.82 -0.23 1.45 16 28 C 0.05 0.40 5.66 -3.53 -0.02 0.38 16 29 C 0.05 0.51 6.99 37.31 0.26 0.77 16 30 O -0.35 -5.42 9.24 -35.23 -0.33 -5.74 16 31 H 0.06 1.04 7.56 -51.93 -0.39 0.65 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.03 0.49 6.42 -51.93 -0.33 0.15 16 34 H 0.39 10.34 7.59 -40.82 -0.31 10.03 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.09 1.03 6.27 -51.93 -0.33 0.70 16 37 H 0.10 1.46 7.08 -51.93 -0.37 1.09 16 38 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.40 0.42 7.93 -40.82 -0.32 0.09 16 41 H 0.41 1.10 8.93 -40.82 -0.36 0.73 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.50 4.06 -51.93 -0.21 0.29 16 44 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -36.00 370.23 -7.28 -43.28 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.78 Total: 8.64 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -2.08 Total: 4.51 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.17 Total: -59.11 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.15 Total: -20.06 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.00 -7.28 -43.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485646066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.730 kcal (2) G-P(sol) polarization free energy of solvation -35.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds