Wall clock time and date at job start Sat Apr 11 2020 04:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46499 * 109.47658 * 184.99947 * 4 2 1 6 6 C 1.34782 * 120.00273 * 180.02562 * 5 4 2 7 7 O 1.21512 * 119.99724 * 0.02562 * 6 5 4 8 8 C 1.48154 * 119.99737 * 180.02562 * 6 5 4 9 9 C 1.39170 * 119.68685 * 180.02562 * 8 6 5 10 10 C 1.38745 * 119.18198 * 179.97438 * 9 8 6 11 11 C 1.38365 * 118.55902 * 0.02562 * 10 9 8 12 12 C 1.39244 * 119.30901 * 359.97438 * 11 10 9 13 13 O 1.35672 * 119.61273 * 180.02562 * 12 11 10 14 14 N 1.31924 * 120.76822 * 359.74129 * 12 11 10 15 15 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 16 16 C 1.46900 * 110.99736 * 58.95813 * 15 2 1 17 17 C 1.46895 * 111.00186 * 295.00225 * 15 2 1 18 18 C 1.50703 * 109.46874 * 189.99595 * 17 15 2 19 19 O 1.21295 * 120.00359 * 0.02562 * 18 17 15 20 20 N 1.34778 * 119.99693 * 179.97438 * 18 17 15 21 21 C 1.37102 * 120.00091 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99374 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00514 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00372 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99728 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47343 * 89.99918 * 25 23 21 27 27 H 1.48501 * 109.47285 * 210.00282 * 25 23 21 28 28 H 1.48505 * 109.47060 * 330.00231 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 33 33 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 34 34 H 0.97002 * 119.99938 * 0.02562 * 5 4 2 35 35 H 1.07996 * 120.40801 * 359.95439 * 9 8 6 36 36 H 1.07999 * 120.71498 * 180.02562 * 10 9 8 37 37 H 1.08001 * 120.34349 * 179.97438 * 11 10 9 38 38 H 0.96699 * 114.00182 * 90.00095 * 13 12 11 39 39 H 1.08997 * 109.47292 * 59.99623 * 16 15 2 40 40 H 1.09002 * 109.47267 * 179.97438 * 16 15 2 41 41 H 1.09000 * 109.47210 * 300.00139 * 16 15 2 42 42 H 1.08999 * 109.47066 * 309.99575 * 17 15 2 43 43 H 1.09001 * 109.47511 * 70.00176 * 17 15 2 44 44 H 0.97002 * 120.00164 * 0.02562 * 20 18 17 45 45 H 0.96997 * 119.99737 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4283 -2.1911 7 8 3.5690 -1.8834 -3.1421 8 6 5.6497 -1.5351 -2.1314 9 6 6.3382 -2.1574 -3.1684 10 6 7.7209 -2.2511 -3.1020 11 6 8.3677 -1.7197 -2.0004 12 6 7.6178 -1.1101 -0.9980 13 8 8.2457 -0.5865 0.0847 14 7 6.3042 -1.0310 -1.0914 15 7 2.0196 -0.6924 1.1995 16 6 1.5283 -2.0760 1.2460 17 6 1.6487 0.0393 2.4181 18 6 2.3678 -0.5571 3.6006 19 8 3.1162 -1.4986 3.4436 20 7 2.1802 -0.0434 4.8324 21 6 2.8348 -0.5856 5.9082 22 1 3.5005 -1.4245 5.7684 23 6 2.6411 -0.0565 7.1783 24 7 3.2682 -0.5764 8.2094 25 14 1.4891 1.3941 7.4200 26 1 0.1160 0.8964 7.6886 27 1 1.9542 2.2092 8.5709 28 1 1.4813 2.2299 6.1925 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1584 -2.1369 34 1 3.9824 -0.4628 -0.4315 35 1 5.8028 -2.5627 -4.0143 36 1 8.2800 -2.7286 -3.8931 37 1 9.4431 -1.7770 -1.9190 38 1 8.5004 0.3407 -0.0186 39 1 1.8762 -2.6150 0.3648 40 1 1.9060 -2.5657 2.1436 41 1 0.4385 -2.0742 1.2639 42 1 1.9297 1.0871 2.3124 43 1 0.5722 -0.0344 2.5727 44 1 1.5820 0.7098 4.9579 45 1 3.1331 -0.2067 9.0960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717468310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:30 Heat of formation + Delta-G solvation = -50.771024 kcal Electronic energy + Delta-G solvation = -28902.145681 eV Core-core repulsion = 24728.064439 eV Total energy + Delta-G solvation = -4174.081242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93877 -39.62448 -38.86292 -37.48116 -37.03278 -34.47066 -33.86122 -32.90262 -31.65262 -31.09379 -30.55731 -28.09513 -26.83365 -25.44481 -24.53099 -23.63110 -23.34731 -20.85350 -20.09205 -19.28471 -18.90471 -18.21530 -17.87400 -16.80090 -16.58093 -16.31225 -15.89139 -15.68000 -15.32449 -15.01501 -14.94697 -14.79458 -14.28486 -14.00407 -13.73026 -13.40431 -13.21948 -13.14838 -13.00866 -12.70888 -12.49580 -12.46790 -12.18052 -11.97434 -11.91195 -11.65799 -11.33193 -11.26634 -11.00414 -10.80936 -10.57916 -10.55244 -10.29762 -9.95228 -9.64062 -9.50855 -9.30377 -8.99144 -8.55797 -8.15390 -7.93490 -6.28478 -3.79640 0.35038 0.83868 2.54516 2.99324 3.03495 3.07461 3.15915 3.30278 3.60812 3.77240 3.89809 4.12042 4.24884 4.54554 4.64394 4.65847 4.71703 4.80303 4.97662 5.11679 5.16229 5.19504 5.22605 5.38673 5.44875 5.48834 5.59406 5.64691 5.71511 5.75618 5.80250 5.84325 5.92130 5.98460 6.09959 6.11297 6.40912 6.54914 7.14539 7.19879 7.28789 7.40091 7.61149 7.67325 8.15109 8.17977 8.63235 8.98574 9.45480 9.87145 10.84822 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.002970 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.147665 B = 9426.260398 C =11297.628440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.063 3.937 3 H 0.090 0.910 4 C 0.128 3.872 5 N -0.690 5.690 6 C 0.568 3.432 7 O -0.543 6.543 8 C 0.107 3.893 9 C -0.126 4.126 10 C -0.068 4.068 11 C -0.166 4.166 12 C 0.315 3.685 13 O -0.475 6.475 14 N -0.471 5.471 15 N -0.510 5.510 16 C 0.016 3.984 17 C 0.042 3.958 18 C 0.453 3.547 19 O -0.555 6.555 20 N -0.593 5.593 21 C -0.302 4.302 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.883 5.883 25 Si 0.879 3.121 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.424 0.576 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.402 0.598 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.021 0.979 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.369 0.631 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.684 3.935 -23.316 23.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.046 4.046 3 H 0.108 0.892 4 C 0.004 3.996 5 N -0.341 5.341 6 C 0.352 3.648 7 O -0.421 6.421 8 C -0.031 4.031 9 C -0.147 4.147 10 C -0.093 4.093 11 C -0.187 4.187 12 C 0.133 3.867 13 O -0.282 6.282 14 N -0.192 5.192 15 N -0.233 5.233 16 C -0.132 4.132 17 C -0.089 4.089 18 C 0.239 3.761 19 O -0.437 6.437 20 N -0.232 5.232 21 C -0.431 4.431 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.523 5.523 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.262 0.738 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.260 0.740 39 H 0.080 0.920 40 H 0.114 0.886 41 H 0.039 0.961 42 H 0.107 0.893 43 H 0.069 0.931 44 H 0.202 0.798 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.787 2.830 -22.924 23.266 hybrid contribution -0.952 1.494 0.225 1.786 sum 1.835 4.324 -22.699 23.180 Atomic orbital electron populations 1.22407 0.96513 1.02924 1.02679 1.22051 0.93482 0.98723 0.90328 0.89239 1.21469 0.79940 1.01199 0.96977 1.45745 1.07627 1.57375 1.23392 1.17836 0.85474 0.78623 0.82842 1.90768 1.68626 1.48905 1.33818 1.20909 0.94236 0.97339 0.90640 1.22131 0.94660 0.98080 0.99799 1.21531 0.93952 0.96343 0.97510 1.22359 1.02111 1.00735 0.93539 1.19127 0.86584 0.94759 0.86224 1.84874 1.75450 1.31637 1.36230 1.67076 1.10538 1.18335 1.23280 1.61796 1.58979 1.02516 1.00040 1.22613 0.96710 0.89305 1.04557 1.21908 0.98061 0.98556 0.90400 1.19646 0.86424 0.86764 0.83304 1.90549 1.39456 1.29356 1.84323 1.42210 1.42632 1.31278 1.07115 1.19424 1.23903 1.15817 0.83970 0.86290 1.25028 0.97794 0.98110 0.95262 1.69623 1.41938 1.41290 0.99440 0.86682 0.81465 0.82706 0.78575 1.19742 1.20234 1.19498 0.91708 0.91823 0.91717 0.91053 0.90912 0.73760 0.83067 0.83545 0.83631 0.74009 0.92001 0.88566 0.96064 0.89328 0.93090 0.79813 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 8.50 37.16 0.32 -1.46 16 2 C 0.06 0.72 2.50 -67.72 -0.17 0.55 16 3 H 0.09 0.93 8.03 -51.93 -0.42 0.52 16 4 C 0.13 1.49 4.69 -4.05 -0.02 1.48 16 5 N -0.69 -9.24 5.38 -61.15 -0.33 -9.57 16 6 C 0.57 8.03 7.81 -12.19 -0.10 7.93 16 7 O -0.54 -8.56 16.32 5.35 0.09 -8.48 16 8 C 0.11 1.38 6.75 -83.02 -0.56 0.82 16 9 C -0.13 -1.27 9.63 -39.05 -0.38 -1.64 16 10 C -0.07 -0.52 10.16 -39.35 -0.40 -0.92 16 11 C -0.17 -1.40 10.04 -39.16 -0.39 -1.79 16 12 C 0.31 3.63 7.74 -17.14 -0.13 3.50 16 13 O -0.47 -5.21 13.56 -18.72 -0.25 -5.46 16 14 N -0.47 -6.41 9.57 -9.87 -0.09 -6.50 16 15 N -0.51 -7.68 3.93 -236.34 -0.93 -8.61 16 16 C 0.02 0.25 8.46 60.06 0.51 0.75 16 17 C 0.04 0.68 4.89 -4.98 -0.02 0.65 16 18 C 0.45 10.13 7.47 -10.98 -0.08 10.05 16 19 O -0.56 -14.71 13.91 5.54 0.08 -14.63 16 20 N -0.59 -14.02 5.09 -10.96 -0.06 -14.07 16 21 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 22 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.93 13.96 55.50 0.77 -25.15 16 25 Si 0.88 19.37 27.74 -169.99 -4.71 14.66 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 29 H 0.06 0.64 6.38 -51.93 -0.33 0.31 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.62 6.75 -51.93 -0.35 0.27 16 32 H 0.07 0.88 6.70 -51.93 -0.35 0.54 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.42 6.13 7.47 -40.82 -0.30 5.83 16 35 H 0.15 1.37 7.63 -52.49 -0.40 0.97 16 36 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.40 2.24 9.06 45.56 0.41 2.65 16 39 H 0.06 0.93 6.44 -51.93 -0.33 0.59 16 40 H 0.10 1.89 5.83 -51.93 -0.30 1.58 16 41 H 0.02 0.29 6.28 -51.93 -0.33 -0.04 16 42 H 0.09 1.25 8.00 -51.93 -0.42 0.83 16 43 H 0.05 0.73 6.94 -51.93 -0.36 0.37 16 44 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 373.84 15.07 5.63 5.63 Total: -1.00 -36.33 373.84 -6.44 -42.77 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -4.96 Total: 17.17 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: -1.68 Total: 12.25 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -0.63 Total: -63.91 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.09 Total: -28.57 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.71 Total: 14.66 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.33 -6.44 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717468310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.004 kcal (2) G-P(sol) polarization free energy of solvation -36.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds