Wall clock time and date at job start Sat Apr 11 2020 04:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47496 * 2 1 4 4 C 1.50696 * 109.47513 * 240.00071 * 2 1 3 5 5 O 1.21280 * 120.00003 * 240.00020 * 4 2 1 6 6 N 1.34779 * 119.99854 * 59.99680 * 4 2 1 7 7 C 1.46503 * 119.99658 * 180.02562 * 6 4 2 8 8 C 1.50706 * 109.46711 * 180.02562 * 7 6 4 9 9 C 1.38216 * 120.01546 * 105.00030 * 8 7 6 10 10 C 1.38217 * 120.02581 * 179.97438 * 9 8 7 11 11 C 1.38265 * 120.05343 * 0.02562 * 10 9 8 12 12 C 1.38181 * 120.02597 * 359.97438 * 11 10 9 13 13 C 1.38443 * 120.00897 * 284.97597 * 8 7 6 14 14 F 1.35099 * 120.02540 * 0.04305 * 13 8 7 15 15 N 1.46905 * 109.47112 * 119.99750 * 2 1 3 16 16 C 1.47896 * 110.99987 * 179.87476 * 15 2 1 17 17 C 1.53995 * 107.05819 * 214.15728 * 16 15 2 18 18 C 1.54592 * 105.13783 * 1.22678 * 17 16 15 19 19 O 1.42907 * 110.72464 * 263.41820 * 18 17 16 20 20 C 1.50704 * 110.72477 * 140.31736 * 18 17 16 21 21 H 1.08000 * 119.99951 * 241.45751 * 20 18 17 22 22 C 1.37879 * 120.00052 * 61.44793 * 20 18 17 23 23 N 1.31508 * 119.99955 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 119.99857 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47231 * 90.00325 * 24 22 20 26 26 H 1.48502 * 109.47394 * 210.00331 * 24 22 20 27 27 H 1.48501 * 109.47465 * 330.00290 * 24 22 20 28 28 C 1.48534 * 110.99837 * 62.48059 * 15 2 1 29 29 H 1.08995 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46922 * 300.00273 * 1 2 3 31 31 H 1.09003 * 109.46608 * 59.99822 * 1 2 3 32 32 H 0.96996 * 120.00221 * 0.02562 * 6 4 2 33 33 H 1.08995 * 109.47411 * 60.00399 * 7 6 4 34 34 H 1.08997 * 109.47403 * 300.00100 * 7 6 4 35 35 H 1.08000 * 119.98343 * 359.95286 * 9 8 7 36 36 H 1.07997 * 119.97708 * 180.02562 * 10 9 8 37 37 H 1.07999 * 119.99414 * 179.72576 * 11 10 9 38 38 H 1.08002 * 120.01438 * 180.02562 * 12 11 10 39 39 H 1.09000 * 109.92075 * 333.51087 * 16 15 2 40 40 H 1.09004 * 109.91997 * 94.80581 * 16 15 2 41 41 H 1.09002 * 110.30619 * 120.14410 * 17 16 15 42 42 H 1.09004 * 110.31015 * 242.31213 * 17 16 15 43 43 H 0.96701 * 113.99504 * 298.54852 * 19 18 17 44 44 H 0.97004 * 119.99632 * 179.97438 * 23 22 20 45 45 H 1.09000 * 110.66696 * 278.15733 * 28 15 2 46 46 H 1.09002 * 110.66494 * 41.27957 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6964 -1.1191 6 7 1.7068 -0.2499 -2.4545 7 6 2.1948 -0.9408 -3.6507 8 6 1.6930 -0.2300 -4.8812 9 6 2.5531 0.5563 -5.6244 10 6 2.0932 1.2079 -6.7533 11 6 0.7725 1.0745 -7.1401 12 6 -0.0892 0.2890 -6.3987 13 6 0.3705 -0.3648 -5.2678 14 9 -0.4711 -1.1328 -4.5418 15 7 2.0197 -0.6925 1.1995 16 6 3.4981 -0.7148 1.2322 17 6 3.9155 -2.0458 1.8846 18 6 2.5894 -2.7808 2.1863 19 8 2.1891 -2.5661 3.5413 20 6 2.7187 -4.2543 1.8978 21 1 2.0930 -4.7146 1.1474 22 6 3.6359 -5.0148 2.5916 23 7 4.3976 -4.4544 3.5056 24 14 3.7966 -6.8411 2.2334 25 1 4.8057 -7.0488 1.1638 26 1 4.2271 -7.5510 3.4646 27 1 2.4850 -7.3753 1.7870 28 6 1.5930 -2.1152 1.2042 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.1494 0.5389 -2.5436 33 1 1.8311 -1.9683 -3.6506 34 1 3.2848 -0.9412 -3.6508 35 1 3.5847 0.6618 -5.3228 36 1 2.7660 1.8218 -7.3337 37 1 0.4131 1.5877 -8.0199 38 1 -1.1207 0.1846 -6.7012 39 1 3.8929 -0.6587 0.2177 40 1 3.8692 0.1215 1.8247 41 1 4.5238 -2.6308 1.1948 42 1 4.4632 -1.8591 2.8083 43 1 2.8199 -2.8979 4.1949 44 1 5.0426 -4.9896 3.9939 45 1 0.5708 -2.2091 1.5707 46 1 1.6870 -2.5483 0.2083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:20 Heat of formation + Delta-G solvation = -86.627097 kcal Electronic energy + Delta-G solvation = -29824.288561 eV Core-core repulsion = 25628.732522 eV Total energy + Delta-G solvation = -4195.556039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.18452 -40.37017 -39.42766 -37.48242 -35.13747 -34.61175 -32.38756 -31.94254 -31.27035 -30.79149 -28.01988 -27.64539 -26.49775 -24.82719 -23.21153 -23.07803 -21.82106 -20.63811 -19.76456 -19.32983 -17.97872 -17.04090 -16.87985 -16.78514 -16.30467 -15.90302 -15.66055 -15.21227 -14.83893 -14.74456 -14.55653 -14.20920 -13.96720 -13.71012 -13.40822 -13.36450 -13.02739 -12.86991 -12.67825 -12.47322 -12.25651 -12.01499 -11.87219 -11.43095 -11.38363 -11.20613 -11.08366 -10.80179 -10.66500 -10.44469 -10.30281 -10.11425 -9.96820 -9.58108 -9.43852 -9.12072 -8.96307 -8.90400 -8.42592 -7.91933 -7.48798 -6.04058 -4.09492 0.65052 0.76095 2.84742 3.00964 3.33056 3.38925 3.43875 3.48004 3.86725 4.18627 4.32221 4.42594 4.52169 4.60670 4.77312 4.88175 4.98896 5.21659 5.24390 5.29372 5.33757 5.37323 5.58791 5.64483 5.71237 5.73312 5.91065 5.92981 5.95904 5.99287 6.20277 6.23866 6.34609 6.39049 6.44944 6.48632 6.72620 6.83343 7.08494 7.31723 7.47670 7.57602 7.71756 7.74853 7.81264 7.99829 8.37317 8.43816 8.91887 9.57424 9.71962 11.03372 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.016786 B = 0.002900 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.649287 B = 9653.192808 C =10268.244428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.055 3.945 3 H 0.099 0.901 4 C 0.480 3.520 5 O -0.506 6.506 6 N -0.731 5.731 7 C 0.160 3.840 8 C -0.138 4.138 9 C -0.073 4.073 10 C -0.133 4.133 11 C -0.087 4.087 12 C -0.157 4.157 13 C 0.114 3.886 14 F -0.131 7.131 15 N -0.487 5.487 16 C 0.034 3.966 17 C -0.118 4.118 18 C 0.258 3.742 19 O -0.584 6.584 20 C -0.524 4.524 21 H 0.058 0.942 22 C 0.068 3.932 23 N -0.898 5.898 24 Si 0.897 3.103 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.042 3.958 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.396 0.604 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.375 0.625 44 H 0.264 0.736 45 H 0.062 0.938 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.948 14.880 -20.373 25.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.059 4.059 3 H 0.117 0.883 4 C 0.265 3.735 5 O -0.380 6.380 6 N -0.386 5.386 7 C 0.037 3.963 8 C -0.139 4.139 9 C -0.092 4.092 10 C -0.151 4.151 11 C -0.105 4.105 12 C -0.176 4.176 13 C 0.095 3.905 14 F -0.109 7.109 15 N -0.210 5.210 16 C -0.094 4.094 17 C -0.156 4.156 18 C 0.218 3.782 19 O -0.391 6.391 20 C -0.563 4.563 21 H 0.076 0.924 22 C -0.133 4.133 23 N -0.538 5.538 24 Si 0.725 3.275 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.085 4.085 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.230 0.770 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.224 0.776 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.045 14.618 -19.930 25.445 hybrid contribution 0.634 -1.415 -0.774 1.733 sum -5.411 13.203 -20.704 25.145 Atomic orbital electron populations 1.21746 0.92448 1.03158 1.02154 1.22082 0.97329 0.99279 0.87193 0.88294 1.22425 0.80464 0.85548 0.85071 1.90797 1.36239 1.25135 1.85849 1.46305 1.54855 1.32265 1.05201 1.20053 0.99612 0.95879 0.80773 1.20060 0.92730 1.01804 0.99330 1.21060 0.99753 0.94305 0.94055 1.21241 0.96060 1.00528 0.97261 1.21079 0.93282 0.97051 0.99099 1.21203 1.01541 0.99663 0.95213 1.17650 0.87695 0.93448 0.91744 1.91554 1.70226 1.72725 1.76433 1.65219 1.09900 1.16081 1.29780 1.22959 0.87290 0.99759 0.99382 1.22774 1.00493 0.92879 0.99493 1.19282 0.87574 0.91639 0.79680 1.86132 1.51587 1.84122 1.17306 1.21583 1.19982 0.93837 1.20896 0.92399 1.24977 0.94879 0.98728 0.94719 1.69743 1.23432 1.36056 1.24580 0.86520 0.78381 0.85002 0.77618 1.20699 1.21192 1.19880 1.23497 0.99061 0.85680 1.00240 0.91809 0.90588 0.92605 0.76964 0.90340 0.90207 0.84686 0.85103 0.84929 0.84566 0.93788 0.92659 0.92099 0.92159 0.77559 0.92629 0.91929 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.00 37.16 0.33 -1.48 16 2 C 0.05 0.86 2.85 -68.86 -0.20 0.66 16 3 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 4 C 0.48 7.82 6.04 -10.99 -0.07 7.75 16 5 O -0.51 -10.63 11.75 5.56 0.07 -10.56 16 6 N -0.73 -8.97 5.44 -61.47 -0.33 -9.31 16 7 C 0.16 1.89 5.49 -5.19 -0.03 1.86 16 8 C -0.14 -1.29 5.25 -104.55 -0.55 -1.84 16 9 C -0.07 -0.54 9.67 -39.60 -0.38 -0.92 16 10 C -0.13 -0.79 10.04 -39.58 -0.40 -1.19 16 11 C -0.09 -0.51 10.04 -39.59 -0.40 -0.91 16 12 C -0.16 -1.16 10.03 -39.51 -0.40 -1.56 16 13 C 0.11 1.10 7.25 -39.42 -0.29 0.82 16 14 F -0.13 -1.53 16.76 2.25 0.04 -1.49 16 15 N -0.49 -9.99 5.30 -223.88 -1.19 -11.17 16 16 C 0.03 0.72 6.00 -2.76 -0.02 0.70 16 17 C -0.12 -2.99 5.26 -25.38 -0.13 -3.13 16 18 C 0.26 6.96 0.95 -89.92 -0.09 6.87 16 19 O -0.58 -16.30 13.10 -35.23 -0.46 -16.76 16 20 C -0.52 -15.19 8.14 -34.44 -0.28 -15.47 16 21 H 0.06 1.70 7.78 -52.49 -0.41 1.29 16 22 C 0.07 1.93 5.28 -17.82 -0.09 1.84 16 23 N -0.90 -25.44 11.00 55.43 0.61 -24.83 16 24 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.04 0.99 4.26 -1.90 -0.01 0.98 16 29 H 0.06 0.96 7.00 -51.93 -0.36 0.59 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.56 7.56 -51.93 -0.39 0.17 16 32 H 0.40 3.88 7.88 -40.82 -0.32 3.56 16 33 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 34 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 35 H 0.14 0.82 8.00 -52.49 -0.42 0.40 16 36 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 38 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.04 0.93 5.64 -51.93 -0.29 0.64 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.67 7.84 -51.93 -0.41 1.26 16 42 H 0.06 1.58 7.98 -51.93 -0.41 1.17 16 43 H 0.38 10.53 7.46 45.56 0.34 10.87 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.06 1.48 7.67 -51.93 -0.40 1.08 16 46 H 0.08 1.89 5.06 -51.93 -0.26 1.63 16 LS Contribution 372.58 15.07 5.61 5.61 Total: -1.00 -33.05 372.58 -9.51 -42.56 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -5.85 Total: 13.95 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.98 Total: -5.02 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.91 Total: -45.31 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.40 Total: -27.32 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.05 -9.51 -42.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.067 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds