Wall clock time and date at job start Sat Apr 11 2020 04:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.46998 * 2 1 4 4 C 1.42901 * 114.00138 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.30147 * 27.82795 * 4 3 2 6 6 C 1.54382 * 110.34031 * 265.54117 * 4 3 2 7 7 N 1.48149 * 104.61646 * 217.26140 * 6 4 3 8 8 C 1.34781 * 127.83813 * 219.60953 * 7 6 4 9 9 O 1.21589 * 119.99833 * 175.23268 * 8 7 6 10 10 C 1.47530 * 120.00029 * 355.23486 * 8 7 6 11 11 C 1.39809 * 120.98002 * 325.50612 * 10 8 7 12 12 N 1.32189 * 118.98186 * 179.72226 * 11 10 8 13 13 C 1.31935 * 121.13533 * 0.56992 * 12 11 10 14 14 N 1.31727 * 122.19779 * 359.70620 * 13 12 11 15 15 C 1.32772 * 120.87380 * 359.97438 * 14 13 12 16 16 O 1.35281 * 120.61289 * 180.02562 * 15 14 13 17 17 C 1.48147 * 104.32502 * 39.58267 * 7 6 4 18 18 C 1.54284 * 110.34136 * 150.00308 * 4 3 2 19 19 H 1.09002 * 110.34189 * 359.97438 * 18 4 3 20 20 C 1.53007 * 110.33908 * 237.74174 * 18 4 3 21 21 N 1.46496 * 109.46999 * 175.00159 * 20 18 4 22 22 C 1.36936 * 120.00220 * 180.02562 * 21 20 18 23 23 H 1.08004 * 119.99648 * 359.97438 * 22 21 20 24 24 C 1.38807 * 120.00264 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00143 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99951 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47253 * 60.00338 * 26 24 22 28 28 H 1.48507 * 109.47104 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47447 * 299.99946 * 26 24 22 30 30 H 1.09001 * 109.47432 * 299.99561 * 1 2 3 31 31 H 1.09005 * 109.47376 * 60.00148 * 1 2 3 32 32 H 1.09004 * 109.47298 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47128 * 240.00501 * 2 1 3 34 34 H 1.08997 * 109.47280 * 120.00090 * 2 1 3 35 35 H 1.08997 * 110.41423 * 336.03978 * 6 4 3 36 36 H 1.08996 * 110.40988 * 98.47886 * 6 4 3 37 37 H 1.08000 * 120.50533 * 0.02562 * 11 10 8 38 38 H 1.08003 * 118.89929 * 179.72612 * 13 12 11 39 39 H 0.96692 * 114.00247 * 269.98451 * 16 15 14 40 40 H 1.08997 * 110.41314 * 201.63429 * 17 7 6 41 41 H 1.09006 * 110.40229 * 79.19642 * 17 7 6 42 42 H 1.08998 * 109.47371 * 295.00041 * 20 18 4 43 43 H 1.09003 * 109.46968 * 54.99875 * 20 18 4 44 44 H 0.96995 * 120.00111 * 359.97438 * 21 20 18 45 45 H 0.97003 * 120.00192 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8795 0.5888 -0.4763 6 6 3.9563 1.6150 1.4440 7 7 5.0842 2.5688 1.3309 8 6 6.2669 2.5310 1.9763 9 8 7.1306 3.3444 1.7108 10 6 6.5133 1.5025 3.0050 11 6 5.4815 1.0521 3.8339 12 7 5.7452 0.1252 4.7387 13 6 6.9612 -0.3679 4.8759 14 7 7.9678 0.0273 4.1236 15 6 7.7954 0.9498 3.1844 16 8 8.8327 1.3513 2.4145 17 6 4.6177 3.5733 0.3470 18 6 3.8668 2.7514 -0.7227 19 1 2.9943 3.2993 -1.0788 20 6 4.7993 2.4186 -1.8892 21 7 5.1057 3.6424 -2.6338 22 6 5.9274 3.5905 -3.7280 23 1 6.3500 2.6474 -4.0418 24 6 6.2174 4.7500 -4.4339 25 7 5.7021 5.8993 -4.0519 26 14 7.3389 4.6792 -5.9261 27 1 6.7486 3.7761 -6.9466 28 1 7.4889 6.0417 -6.4977 29 1 8.6711 4.1639 -5.5202 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.1783 2.0215 2.0902 36 1 4.3063 0.6561 1.8259 37 1 4.4832 1.4518 3.7332 38 1 7.1372 -1.1208 5.6299 39 1 9.3245 2.1008 2.7770 40 1 5.4665 4.0917 -0.0987 41 1 3.9428 4.2855 0.8219 42 1 5.7231 1.9867 -1.5041 43 1 4.3119 1.7028 -2.5512 44 1 4.7260 4.4894 -2.3523 45 1 5.9044 6.7095 -4.5455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691752607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:41:20 Heat of formation + Delta-G solvation = -40.426468 kcal Electronic energy + Delta-G solvation = -29608.456706 eV Core-core repulsion = 25434.824038 eV Total energy + Delta-G solvation = -4173.632668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.70912 -40.06814 -38.54819 -37.84772 -36.60858 -34.71034 -33.80521 -32.57444 -31.70502 -31.35145 -29.56000 -28.39024 -26.37436 -25.10321 -24.41595 -23.72451 -22.97791 -21.90036 -20.50656 -19.74795 -19.45626 -18.46567 -17.59553 -17.19817 -16.93399 -16.69791 -16.15243 -15.76721 -15.54339 -15.03452 -14.65754 -14.42944 -14.22067 -14.16881 -13.85550 -13.71609 -13.50301 -13.23893 -12.92153 -12.75886 -12.56862 -12.45836 -11.88441 -11.81991 -11.57350 -11.52931 -11.18284 -11.06520 -11.00089 -10.76672 -10.72226 -10.50965 -10.12669 -10.06834 -9.94511 -9.77392 -9.76455 -9.55162 -8.87634 -8.75375 -6.91747 -5.74018 -3.03133 0.05829 0.48540 2.47692 2.70210 2.98659 3.30058 3.47151 3.50339 3.51758 3.53968 3.61623 3.89005 4.09976 4.42384 4.48055 4.58269 4.68304 4.82086 4.89429 4.95688 5.03047 5.04023 5.12338 5.19785 5.28503 5.34641 5.55132 5.62099 5.66771 5.69293 5.74645 5.83573 5.95497 6.02840 6.07761 6.24586 6.32877 6.37619 6.65059 6.76333 7.09303 7.14822 7.38687 7.52746 7.71863 7.98038 8.44163 9.55726 10.10772 10.45936 11.48682 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.008866 B = 0.003815 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.511635 B = 7338.255435 C = 9783.368144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.371 6.371 4 C 0.084 3.916 5 H 0.078 0.922 6 C 0.074 3.926 7 N -0.610 5.610 8 C 0.591 3.409 9 O -0.512 6.512 10 C -0.250 4.250 11 C 0.193 3.807 12 N -0.529 5.529 13 C 0.335 3.665 14 N -0.541 5.541 15 C 0.418 3.582 16 O -0.460 6.460 17 C 0.113 3.887 18 C -0.106 4.106 19 H 0.104 0.896 20 C 0.164 3.836 21 N -0.729 5.729 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.178 0.822 38 H 0.207 0.793 39 H 0.420 0.580 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.020 0.980 43 H 0.021 0.979 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.400 -13.490 19.561 24.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.289 6.289 4 C 0.025 3.975 5 H 0.096 0.904 6 C -0.050 4.050 7 N -0.345 5.345 8 C 0.378 3.622 9 O -0.387 6.387 10 C -0.259 4.259 11 C 0.027 3.973 12 N -0.244 5.244 13 C 0.048 3.952 14 N -0.266 5.266 15 C 0.229 3.771 16 O -0.269 6.269 17 C -0.008 4.008 18 C -0.126 4.126 19 H 0.122 0.878 20 C 0.036 3.964 21 N -0.373 5.373 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.581 5.581 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.195 0.805 38 H 0.223 0.777 39 H 0.282 0.718 40 H 0.124 0.876 41 H 0.093 0.907 42 H 0.038 0.962 43 H 0.039 0.961 44 H 0.218 0.782 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.782 -14.005 19.588 24.764 hybrid contribution 0.681 0.861 -1.124 1.571 sum -5.102 -13.144 18.463 23.231 Atomic orbital electron populations 1.21739 0.93696 1.02120 1.03265 1.22550 0.95683 0.83974 1.00096 1.87989 1.19973 1.26259 1.94728 1.22976 0.81304 0.99518 0.93712 0.90400 1.23089 0.89340 0.93519 0.99026 1.48678 1.14201 1.28287 1.43353 1.17053 0.80785 0.83775 0.80584 1.90858 1.42537 1.40520 1.64811 1.22015 0.96868 1.03601 1.03427 1.23661 0.98775 0.88136 0.86770 1.68457 1.23194 1.11560 1.21204 1.25072 0.82400 0.94231 0.93496 1.68155 1.37102 1.14679 1.06668 1.19435 0.86522 0.86801 0.84326 1.84606 1.43417 1.54378 1.44523 1.22574 0.99861 0.90529 0.87867 1.22451 0.99750 0.94686 0.95703 0.87765 1.20640 0.94514 0.91023 0.90182 1.42288 1.58050 1.04569 1.32430 1.19138 1.20874 0.93869 1.03301 0.91337 1.24717 1.00875 0.95423 0.99690 1.69642 1.48367 0.98090 1.41964 0.86268 0.80677 0.76489 0.82749 1.21296 1.21647 1.21239 0.91895 0.91627 0.91269 0.93093 0.93553 0.89367 0.90562 0.80505 0.77710 0.71775 0.87632 0.90663 0.96223 0.96122 0.78158 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.05 0.49 6.50 37.16 0.24 0.73 16 3 O -0.37 -4.43 9.95 -35.23 -0.35 -4.78 16 4 C 0.08 1.04 3.20 -25.33 -0.08 0.96 16 5 H 0.08 0.96 7.38 -51.93 -0.38 0.57 16 6 C 0.07 0.77 4.99 -2.41 -0.01 0.76 16 7 N -0.61 -8.36 3.31 -170.54 -0.57 -8.92 16 8 C 0.59 8.87 7.50 -12.47 -0.09 8.78 16 9 O -0.51 -9.58 16.29 -11.19 -0.18 -9.76 16 10 C -0.25 -3.01 5.53 -104.57 -0.58 -3.59 16 11 C 0.19 1.82 9.20 -16.81 -0.15 1.67 16 12 N -0.53 -4.88 10.42 -14.29 -0.15 -5.03 16 13 C 0.34 2.87 12.27 -92.09 -1.13 1.74 16 14 N -0.54 -5.98 10.45 -14.32 -0.15 -6.13 16 15 C 0.42 5.18 7.82 -16.19 -0.13 5.05 16 16 O -0.46 -5.93 12.34 -34.01 -0.42 -6.35 16 17 C 0.11 1.76 6.49 -2.41 -0.02 1.75 16 18 C -0.11 -1.67 2.91 -89.22 -0.26 -1.93 16 19 H 0.10 1.70 7.98 -51.93 -0.41 1.28 16 20 C 0.16 3.31 5.37 -4.04 -0.02 3.29 16 21 N -0.73 -18.51 5.21 -59.91 -0.31 -18.83 16 22 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 23 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 26 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.47 8.10 -51.93 -0.42 0.05 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.76 7.87 -51.93 -0.41 0.35 16 36 H 0.08 0.68 6.34 -51.93 -0.33 0.35 16 37 H 0.18 1.28 6.24 -52.49 -0.33 0.96 16 38 H 0.21 0.94 8.06 -52.48 -0.42 0.51 16 39 H 0.42 3.72 9.06 45.56 0.41 4.13 16 40 H 0.11 2.07 7.27 -51.93 -0.38 1.70 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.02 0.43 8.13 -51.93 -0.42 0.00 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.38 10.14 7.61 -40.82 -0.31 9.83 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -35.81 378.47 -8.31 -44.12 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.49 Total: 8.85 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: -2.10 Total: 10.98 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -0.45 Total: -66.60 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.95 Total: -20.90 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.81 -8.31 -44.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691752607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.692 kcal (2) G-P(sol) polarization free energy of solvation -35.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds