Wall clock time and date at job start Sat Apr 11 2020 04:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.46998 * 2 1 4 4 C 1.42901 * 114.00138 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.30147 * 27.82795 * 4 3 2 6 6 C 1.54382 * 110.34031 * 265.54117 * 4 3 2 7 7 N 1.48149 * 104.61646 * 217.26140 * 6 4 3 8 8 C 1.34781 * 127.83813 * 219.60953 * 7 6 4 9 9 O 1.21589 * 119.99833 * 175.23268 * 8 7 6 10 10 C 1.47530 * 120.00029 * 355.23486 * 8 7 6 11 11 C 1.39809 * 120.98002 * 325.50612 * 10 8 7 12 12 N 1.32189 * 118.98186 * 179.72226 * 11 10 8 13 13 C 1.31935 * 121.13533 * 0.56992 * 12 11 10 14 14 N 1.31727 * 122.19779 * 359.70620 * 13 12 11 15 15 C 1.32772 * 120.87380 * 359.97438 * 14 13 12 16 16 O 1.35281 * 120.61289 * 180.02562 * 15 14 13 17 17 C 1.48147 * 104.32502 * 39.58267 * 7 6 4 18 18 C 1.54284 * 110.34136 * 150.00308 * 4 3 2 19 19 H 1.09002 * 110.34189 * 359.97438 * 18 4 3 20 20 C 1.53007 * 110.33908 * 237.74174 * 18 4 3 21 21 N 1.46496 * 109.46999 * 175.00159 * 20 18 4 22 22 C 1.36936 * 120.00220 * 180.02562 * 21 20 18 23 23 H 1.08004 * 119.99648 * 359.97438 * 22 21 20 24 24 C 1.38807 * 120.00264 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00143 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99951 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47253 * 60.00338 * 26 24 22 28 28 H 1.48507 * 109.47104 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47447 * 299.99946 * 26 24 22 30 30 H 1.09001 * 109.47432 * 299.99561 * 1 2 3 31 31 H 1.09005 * 109.47376 * 60.00148 * 1 2 3 32 32 H 1.09004 * 109.47298 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47128 * 240.00501 * 2 1 3 34 34 H 1.08997 * 109.47280 * 120.00090 * 2 1 3 35 35 H 1.08997 * 110.41423 * 336.03978 * 6 4 3 36 36 H 1.08996 * 110.40988 * 98.47886 * 6 4 3 37 37 H 1.08000 * 120.50533 * 0.02562 * 11 10 8 38 38 H 1.08003 * 118.89929 * 179.72612 * 13 12 11 39 39 H 0.96692 * 114.00247 * 269.98451 * 16 15 14 40 40 H 1.08997 * 110.41314 * 201.63429 * 17 7 6 41 41 H 1.09006 * 110.40229 * 79.19642 * 17 7 6 42 42 H 1.08998 * 109.47371 * 295.00041 * 20 18 4 43 43 H 1.09003 * 109.46968 * 54.99875 * 20 18 4 44 44 H 0.96995 * 120.00111 * 359.97438 * 21 20 18 45 45 H 0.97003 * 120.00192 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8795 0.5888 -0.4763 6 6 3.9563 1.6150 1.4440 7 7 5.0842 2.5688 1.3309 8 6 6.2669 2.5310 1.9763 9 8 7.1306 3.3444 1.7108 10 6 6.5133 1.5025 3.0050 11 6 5.4815 1.0521 3.8339 12 7 5.7452 0.1252 4.7387 13 6 6.9612 -0.3679 4.8759 14 7 7.9678 0.0273 4.1236 15 6 7.7954 0.9498 3.1844 16 8 8.8327 1.3513 2.4145 17 6 4.6177 3.5733 0.3470 18 6 3.8668 2.7514 -0.7227 19 1 2.9943 3.2993 -1.0788 20 6 4.7993 2.4186 -1.8892 21 7 5.1057 3.6424 -2.6338 22 6 5.9274 3.5905 -3.7280 23 1 6.3500 2.6474 -4.0418 24 6 6.2174 4.7500 -4.4339 25 7 5.7021 5.8993 -4.0519 26 14 7.3389 4.6792 -5.9261 27 1 6.7486 3.7761 -6.9466 28 1 7.4889 6.0417 -6.4977 29 1 8.6711 4.1639 -5.5202 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.1783 2.0215 2.0902 36 1 4.3063 0.6561 1.8259 37 1 4.4832 1.4518 3.7332 38 1 7.1372 -1.1208 5.6299 39 1 9.3245 2.1008 2.7770 40 1 5.4665 4.0917 -0.0987 41 1 3.9428 4.2855 0.8219 42 1 5.7231 1.9867 -1.5041 43 1 4.3119 1.7028 -2.5512 44 1 4.7260 4.4894 -2.3523 45 1 5.9044 6.7095 -4.5455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691752607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:41:20 Heat of formation + Delta-G solvation = -69.267171 kcal Electronic energy + Delta-G solvation = -29609.707333 eV Core-core repulsion = 25434.824038 eV Total energy + Delta-G solvation = -4174.883295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.55676 -41.13480 -39.59928 -38.75277 -37.73614 -36.43875 -34.72479 -33.93434 -32.92124 -32.35220 -30.99464 -29.45839 -27.67955 -26.35943 -25.36501 -25.07585 -23.92977 -23.21107 -21.62520 -20.97839 -20.32047 -19.39170 -19.21740 -18.33484 -18.14242 -17.59753 -17.19438 -16.77298 -16.58646 -16.42050 -15.95250 -15.61395 -15.36782 -15.16561 -15.03429 -14.92495 -14.79980 -14.58483 -14.29902 -13.85014 -13.48513 -13.24116 -13.14201 -13.12643 -12.87889 -12.73850 -12.47449 -12.37581 -12.26361 -12.21550 -12.02883 -11.85773 -11.74125 -11.64356 -11.17617 -10.97961 -10.83748 -10.57262 -10.54599 -9.88705 -9.04637 -7.97880 -5.27242 -0.75534 -0.30206 1.41439 1.44006 1.47797 1.53612 1.67159 2.16783 2.49815 2.50530 2.64889 2.94745 3.12519 3.15189 3.34999 3.44074 3.54732 3.67339 3.83289 4.00351 4.10397 4.13595 4.27301 4.28235 4.32517 4.35218 4.46042 4.57003 4.59887 4.66469 4.72424 4.81647 4.88365 4.96842 5.01966 5.06222 5.12656 5.24909 5.36891 5.44531 5.56940 6.23621 6.26609 6.29531 6.31229 6.77824 6.86046 7.30602 8.03661 8.28346 9.25178 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.008866 B = 0.003815 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.511635 B = 7338.255435 C = 9783.368144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.383 6.383 4 C 0.094 3.906 5 H 0.079 0.921 6 C 0.080 3.920 7 N -0.609 5.609 8 C 0.588 3.412 9 O -0.564 6.564 10 C -0.265 4.265 11 C 0.211 3.789 12 N -0.528 5.528 13 C 0.344 3.656 14 N -0.556 5.556 15 C 0.407 3.593 16 O -0.482 6.482 17 C 0.117 3.883 18 C -0.099 4.099 19 H 0.099 0.901 20 C 0.168 3.832 21 N -0.740 5.740 22 C -0.252 4.252 23 H 0.070 0.930 24 C -0.070 4.070 25 N -0.965 5.965 26 Si 0.973 3.027 27 H -0.275 1.275 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.204 0.796 38 H 0.247 0.753 39 H 0.430 0.570 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.005 0.995 43 H 0.023 0.977 44 H 0.376 0.624 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.798 -15.952 21.411 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.301 6.301 4 C 0.034 3.966 5 H 0.097 0.903 6 C -0.043 4.043 7 N -0.342 5.342 8 C 0.377 3.623 9 O -0.443 6.443 10 C -0.275 4.275 11 C 0.044 3.956 12 N -0.242 5.242 13 C 0.058 3.942 14 N -0.281 5.281 15 C 0.219 3.781 16 O -0.293 6.293 17 C -0.005 4.005 18 C -0.118 4.118 19 H 0.117 0.883 20 C 0.041 3.959 21 N -0.383 5.383 22 C -0.383 4.383 23 H 0.088 0.912 24 C -0.263 4.263 25 N -0.615 5.615 26 Si 0.801 3.199 27 H -0.200 1.200 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.118 0.882 37 H 0.220 0.780 38 H 0.263 0.737 39 H 0.295 0.705 40 H 0.076 0.924 41 H 0.115 0.885 42 H 0.023 0.977 43 H 0.041 0.959 44 H 0.209 0.791 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.212 -16.536 21.463 28.037 hybrid contribution 1.074 1.528 -1.636 2.483 sum -6.138 -15.008 19.827 25.613 Atomic orbital electron populations 1.21758 0.92755 1.03333 1.02777 1.22802 0.96461 0.82692 1.01144 1.87973 1.19093 1.28226 1.94848 1.22757 0.82101 0.97281 0.94421 0.90286 1.23289 0.88689 0.94086 0.98193 1.48711 1.14803 1.28373 1.42361 1.17523 0.80288 0.83696 0.80800 1.90824 1.44186 1.42627 1.66658 1.21758 0.97704 1.04056 1.03948 1.24013 0.98969 0.87229 0.85371 1.68611 1.23337 1.11452 1.20844 1.25949 0.81625 0.93701 0.92904 1.68244 1.38166 1.14743 1.06948 1.19626 0.86486 0.87337 0.84684 1.84546 1.44043 1.55108 1.45639 1.22367 0.98363 0.91236 0.88541 1.22254 0.98355 0.96874 0.94350 0.88291 1.20700 0.94829 0.89036 0.91340 1.42465 1.57642 1.05917 1.32299 1.19531 1.20845 0.93984 1.03988 0.91172 1.25545 1.02789 0.95158 1.02797 1.69796 1.49937 0.98532 1.43271 0.85235 0.78747 0.76446 0.79464 1.20044 1.21720 1.20865 0.91474 0.93028 0.89227 0.93411 0.91138 0.86343 0.88162 0.77956 0.73748 0.70509 0.92416 0.88470 0.97682 0.95870 0.79134 0.93853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.04 0.69 6.50 71.98 0.47 1.16 16 3 O -0.38 -8.19 9.95 -148.98 -1.48 -9.68 16 4 C 0.09 2.15 3.20 31.50 0.10 2.25 16 5 H 0.08 1.79 7.38 -2.39 -0.02 1.78 16 6 C 0.08 1.42 4.99 86.53 0.43 1.85 16 7 N -0.61 -16.26 3.31 -811.71 -2.69 -18.95 16 8 C 0.59 17.79 7.50 86.69 0.65 18.44 16 9 O -0.56 -22.27 16.29 11.76 0.19 -22.08 16 10 C -0.27 -6.09 5.53 -19.83 -0.11 -6.20 16 11 C 0.21 3.33 9.20 85.02 0.78 4.11 16 12 N -0.53 -7.77 10.42 -199.12 -2.07 -9.85 16 13 C 0.34 4.77 12.27 180.86 2.22 6.99 16 14 N -0.56 -11.32 10.45 -312.05 -3.26 -14.58 16 15 C 0.41 9.89 7.82 85.17 0.67 10.56 16 16 O -0.48 -12.90 12.34 -69.91 -0.86 -13.76 16 17 C 0.12 3.73 6.49 86.53 0.56 4.29 16 18 C -0.10 -3.11 2.91 -9.89 -0.03 -3.14 16 19 H 0.10 3.24 7.98 -2.39 -0.02 3.22 16 20 C 0.17 6.95 5.37 86.38 0.46 7.42 16 21 N -0.74 -39.04 5.21 -343.45 -1.79 -40.82 16 22 C -0.25 -14.71 9.99 84.03 0.84 -13.87 16 23 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 24 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 25 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16 26 Si 0.97 47.73 29.55 68.60 2.03 49.76 16 27 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 28 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 29 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.12 1.49 7.87 -2.39 -0.02 1.48 16 36 H 0.10 1.38 6.34 -2.39 -0.02 1.36 16 37 H 0.20 2.04 6.24 -2.91 -0.02 2.02 16 38 H 0.25 1.16 8.06 -2.91 -0.02 1.13 16 39 H 0.43 8.34 9.06 -74.06 -0.67 7.67 16 40 H 0.06 2.42 7.27 -2.39 -0.02 2.40 16 41 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 42 H 0.01 0.23 8.13 -2.39 -0.02 0.21 16 43 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.38 20.79 7.61 -92.71 -0.71 20.08 16 45 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -80.68 378.47 -1.74 -82.42 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: -0.33 Total: 28.78 kcal Atomic # 6 Polarization: 20.69 SS G_CDS: 8.25 Total: 28.94 kcal Atomic # 7 Polarization: -134.85 SS G_CDS: -9.53 Total: -144.38 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -2.15 Total: -45.52 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -80.68 -1.74 -82.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691752607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.153 kcal (2) G-P(sol) polarization free energy of solvation -80.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds