Wall clock time and date at job start Sat Apr 11 2020 04:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35510 * 116.99900 * 2 1 4 4 C 1.39655 * 120.45250 * 179.97438 * 3 2 1 5 5 C 1.39119 * 118.32674 * 180.02562 * 4 3 2 6 6 C 1.48458 * 120.48261 * 179.97438 * 5 4 3 7 7 O 1.21473 * 120.00226 * 348.56141 * 6 5 4 8 8 N 1.34777 * 119.99614 * 168.56056 * 6 5 4 9 9 C 1.47079 * 120.87771 * 178.67668 * 8 6 5 10 10 C 1.53699 * 108.27475 * 128.75633 * 9 8 6 11 11 N 1.46896 * 109.25765 * 54.08331 * 10 9 8 12 12 C 1.46906 * 111.00094 * 172.60782 * 11 10 9 13 13 C 1.50694 * 109.47090 * 294.29924 * 12 11 10 14 14 H 1.08004 * 120.00065 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99980 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99927 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 119.99932 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46813 * 90.00277 * 17 15 13 19 19 H 1.48497 * 109.47165 * 209.99746 * 17 15 13 20 20 H 1.48498 * 109.47278 * 330.00339 * 17 15 13 21 21 C 1.46900 * 111.26982 * 296.75419 * 11 10 9 22 22 C 1.47081 * 120.88423 * 358.95627 * 8 6 5 23 23 N 1.33261 * 119.03300 * 0.02562 * 5 4 3 24 24 C 1.32063 * 120.82459 * 359.97438 * 23 5 4 25 25 O 1.35469 * 119.07926 * 180.02562 * 24 23 5 26 26 C 1.42903 * 116.99877 * 179.97438 * 25 24 23 27 27 N 1.32400 * 121.84152 * 0.02562 * 24 23 5 28 28 H 1.09011 * 109.47297 * 300.00189 * 1 2 3 29 29 H 1.08999 * 109.47128 * 59.99716 * 1 2 3 30 30 H 1.08995 * 109.47497 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.83925 * 0.04367 * 4 3 2 32 32 H 1.09000 * 109.63000 * 248.51813 * 9 8 6 33 33 H 1.08997 * 109.63301 * 9.10733 * 9 8 6 34 34 H 1.09006 * 109.64931 * 294.07933 * 10 9 8 35 35 H 1.09002 * 109.42227 * 173.94544 * 10 9 8 36 36 H 1.08998 * 109.46734 * 54.30056 * 12 11 10 37 37 H 1.09004 * 109.46946 * 174.29648 * 12 11 10 38 38 H 0.96990 * 119.99811 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.49579 * 303.14639 * 21 11 10 40 40 H 1.09003 * 109.52009 * 183.07696 * 21 11 10 41 41 H 1.09002 * 109.62897 * 350.89634 * 22 8 6 42 42 H 1.09006 * 109.62725 * 111.47643 * 22 8 6 43 43 H 1.09001 * 109.47216 * 179.97438 * 26 25 24 44 44 H 1.08992 * 109.47223 * 300.00126 * 26 25 24 45 45 H 1.09000 * 109.47226 * 60.00038 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4382 1.2915 0.0005 5 6 4.0233 2.5537 0.0011 6 6 5.5008 2.6988 0.0022 7 8 6.2059 1.7320 0.2113 8 7 6.0597 3.9032 -0.2288 9 6 7.5202 4.0750 -0.2036 10 6 7.9446 4.7837 -1.4997 11 7 7.1761 6.0269 -1.6461 12 6 7.6718 6.8223 -2.7774 13 6 9.0739 7.2912 -2.4855 14 1 9.5494 7.0246 -1.5531 15 6 9.7502 8.0595 -3.4093 16 7 10.9740 8.4683 -3.1548 17 14 8.9286 8.5187 -5.0228 18 1 8.1990 9.8018 -4.8592 19 1 9.9614 8.6680 -6.0793 20 1 7.9722 7.4517 -5.4126 21 6 5.7397 5.7523 -1.7851 22 6 5.2251 5.0820 -0.5067 23 7 3.2382 3.6305 0.0016 24 6 1.9232 3.5092 0.0010 25 8 1.1589 4.6277 0.0010 26 6 -0.2584 4.4449 -0.0001 27 7 1.3309 2.3251 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 4.0466 0.3993 0.0003 32 1 7.8029 4.6803 0.6577 33 1 8.0027 3.0994 -0.1433 34 1 7.7510 4.1337 -2.3531 35 1 9.0084 5.0170 -1.4537 36 1 7.6738 6.2097 -3.6789 37 1 7.0235 7.6858 -2.9262 38 1 11.4496 9.0092 -3.8045 39 1 5.5767 5.0889 -2.6345 40 1 5.2039 6.6878 -1.9462 41 1 4.1894 4.7726 -0.6469 42 1 5.2915 5.7822 0.3261 43 1 -0.7503 5.4176 0.0005 44 1 -0.5524 3.8893 -0.8905 45 1 -0.5537 3.8884 0.8894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189090708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:42:52 Heat of formation + Delta-G solvation = -5.652986 kcal Electronic energy + Delta-G solvation = -29423.651495 eV Core-core repulsion = 25251.526718 eV Total energy + Delta-G solvation = -4172.124777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.00674 -40.02722 -39.53644 -38.15552 -37.53226 -34.69995 -33.73315 -32.32366 -31.85522 -30.67739 -28.97383 -28.40767 -27.56013 -26.08881 -24.74745 -24.34400 -23.09628 -21.83980 -20.94786 -19.78467 -19.13947 -18.38410 -17.65001 -17.21070 -16.82524 -16.26335 -16.15873 -16.12009 -15.79565 -15.37576 -15.32589 -14.63422 -14.49911 -14.44930 -14.04781 -13.90043 -13.79611 -13.44521 -12.92689 -12.67451 -12.60710 -12.37843 -12.34834 -12.13312 -11.62722 -11.51886 -11.36260 -11.11174 -10.93899 -10.74094 -10.65744 -10.52854 -10.43400 -10.37863 -9.92210 -9.35928 -9.30023 -8.96869 -8.57152 -8.51308 -7.39329 -6.05457 -4.02966 0.14335 0.61183 1.97619 2.26785 2.56863 2.92465 3.28502 3.36035 3.38035 3.39443 3.46377 4.03077 4.21778 4.41899 4.65632 4.68834 4.73788 4.74539 4.80559 4.81549 4.91733 5.03765 5.13789 5.26702 5.36436 5.41746 5.52710 5.67824 5.71017 5.84540 5.94429 6.11236 6.16427 6.25236 6.42318 6.46899 6.55295 6.64229 6.77518 6.86212 6.98986 7.37952 7.50420 7.57891 7.87396 8.01187 8.01646 8.64559 9.02482 9.56223 11.07497 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.002704 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.839847 B =10353.918241 C =11250.947286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.292 6.292 3 C 0.405 3.595 4 C -0.222 4.222 5 C 0.204 3.796 6 C 0.567 3.433 7 O -0.529 6.529 8 N -0.575 5.575 9 C 0.112 3.888 10 C 0.052 3.948 11 N -0.528 5.528 12 C 0.162 3.838 13 C -0.510 4.510 14 H 0.082 0.918 15 C 0.069 3.931 16 N -0.899 5.899 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.269 1.269 21 C 0.038 3.962 22 C 0.069 3.931 23 N -0.509 5.509 24 C 0.534 3.466 25 O -0.280 6.280 26 C 0.044 3.956 27 N -0.614 5.614 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.170 0.830 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.025 0.975 35 H 0.104 0.896 36 H -0.012 1.012 37 H 0.026 0.974 38 H 0.264 0.736 39 H 0.022 0.978 40 H 0.081 0.919 41 H 0.152 0.848 42 H 0.075 0.925 43 H 0.107 0.893 44 H 0.063 0.937 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.623 -14.674 6.955 30.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.195 6.195 3 C 0.217 3.783 4 C -0.247 4.247 5 C 0.060 3.940 6 C 0.351 3.649 7 O -0.405 6.405 8 N -0.306 5.306 9 C -0.010 4.010 10 C -0.077 4.077 11 N -0.253 5.253 12 C 0.036 3.964 13 C -0.548 4.548 14 H 0.100 0.900 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.702 3.298 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.194 1.194 21 C -0.091 4.091 22 C -0.053 4.053 23 N -0.243 5.243 24 C 0.232 3.768 25 O -0.180 6.180 26 C -0.052 4.052 27 N -0.361 5.361 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.122 0.878 31 H 0.188 0.812 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.044 0.956 35 H 0.122 0.878 36 H 0.005 0.995 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.041 0.959 40 H 0.099 0.901 41 H 0.168 0.832 42 H 0.094 0.906 43 H 0.126 0.874 44 H 0.082 0.918 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.467 -13.986 7.410 29.985 hybrid contribution -0.537 -0.654 -1.737 1.932 sum -26.005 -14.640 5.673 30.377 Atomic orbital electron populations 1.23028 0.76204 1.03826 1.02855 1.86305 1.23720 1.23237 1.86219 1.19635 0.88819 0.83937 0.85934 1.21691 0.92300 1.00511 1.10156 1.21385 0.94650 0.87440 0.90484 1.17573 0.84683 0.83698 0.78947 1.90797 1.61158 1.38072 1.50515 1.48186 1.08522 1.08159 1.65720 1.22124 0.77891 1.01414 0.99567 1.22449 1.00801 0.90072 0.94408 1.61934 1.00583 1.17403 1.45332 1.20175 0.96970 0.92179 0.87074 1.21026 0.96625 1.32031 1.05143 0.90023 1.24898 0.94752 0.95608 0.98055 1.69890 1.11271 1.36759 1.35907 0.86867 0.79485 0.79328 0.84099 1.20131 1.21234 1.19351 1.22505 0.91326 0.99499 0.95792 1.23389 0.98282 0.85969 0.97663 1.67816 1.02198 1.31393 1.22881 1.20486 0.86213 0.83231 0.86833 1.86180 1.20305 1.25020 1.86543 1.23043 0.75552 1.03862 1.02730 1.67513 1.42278 0.98866 1.27450 0.91803 0.91792 0.87810 0.81209 0.90078 0.89002 0.95645 0.87803 0.99451 0.95646 0.92654 0.95943 0.90084 0.83241 0.90641 0.87448 0.91844 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.41 101.05 1.05 1.23 16 2 O -0.29 -2.53 10.49 -18.22 -0.19 -2.72 16 3 C 0.40 4.18 7.53 -16.70 -0.13 4.06 16 4 C -0.22 -2.54 9.67 -38.73 -0.37 -2.92 16 5 C 0.20 2.70 6.63 -82.71 -0.55 2.15 16 6 C 0.57 8.76 7.70 -12.05 -0.09 8.66 16 7 O -0.53 -9.12 15.92 5.39 0.09 -9.04 16 8 N -0.58 -9.13 3.00 -173.06 -0.52 -9.65 16 9 C 0.11 1.84 6.63 -3.36 -0.02 1.82 16 10 C 0.05 0.99 5.47 -3.46 -0.02 0.98 16 11 N -0.53 -10.99 4.62 -235.46 -1.09 -12.08 16 12 C 0.16 3.92 3.79 -4.98 -0.02 3.90 16 13 C -0.51 -14.31 8.96 -34.44 -0.31 -14.62 16 14 H 0.08 2.47 7.37 -52.48 -0.39 2.09 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 17 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 21 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 22 C 0.07 1.05 6.19 -3.60 -0.02 1.03 16 23 N -0.51 -6.58 6.26 -11.35 -0.07 -6.65 16 24 C 0.53 6.13 8.48 -91.40 -0.78 5.36 16 25 O -0.28 -2.84 10.56 -18.10 -0.19 -3.03 16 26 C 0.04 0.26 10.36 101.05 1.05 1.30 16 27 N -0.61 -6.27 8.14 -14.79 -0.12 -6.39 16 28 H 0.06 0.31 8.12 -51.92 -0.42 -0.12 16 29 H 0.06 0.31 8.12 -51.93 -0.42 -0.11 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.17 1.81 7.76 -52.49 -0.41 1.41 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.09 1.46 7.05 -51.93 -0.37 1.09 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.10 2.18 6.67 -51.93 -0.35 1.84 16 36 H -0.01 -0.30 7.18 -51.93 -0.37 -0.67 16 37 H 0.03 0.61 7.40 -51.93 -0.38 0.23 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 1.33 7.99 -51.93 -0.41 0.92 16 41 H 0.15 2.14 3.84 -88.73 -0.34 1.80 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 45 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -33.04 368.92 -7.17 -40.21 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.41 Total: -1.85 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: -0.33 Total: 15.47 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -1.03 Total: -61.39 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.30 Total: -14.79 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.04 -7.17 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189090708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.555 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds