Wall clock time and date at job start Sat Apr 11 2020 04:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35510 * 116.99900 * 2 1 4 4 C 1.39655 * 120.45250 * 179.97438 * 3 2 1 5 5 C 1.39119 * 118.32674 * 180.02562 * 4 3 2 6 6 C 1.48458 * 120.48261 * 179.97438 * 5 4 3 7 7 O 1.21473 * 120.00226 * 348.56141 * 6 5 4 8 8 N 1.34777 * 119.99614 * 168.56056 * 6 5 4 9 9 C 1.47079 * 120.87771 * 178.67668 * 8 6 5 10 10 C 1.53699 * 108.27475 * 128.75633 * 9 8 6 11 11 N 1.46896 * 109.25765 * 54.08331 * 10 9 8 12 12 C 1.46906 * 111.00094 * 172.60782 * 11 10 9 13 13 C 1.50694 * 109.47090 * 294.29924 * 12 11 10 14 14 H 1.08004 * 120.00065 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99980 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99927 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 119.99932 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46813 * 90.00277 * 17 15 13 19 19 H 1.48497 * 109.47165 * 209.99746 * 17 15 13 20 20 H 1.48498 * 109.47278 * 330.00339 * 17 15 13 21 21 C 1.46900 * 111.26982 * 296.75419 * 11 10 9 22 22 C 1.47081 * 120.88423 * 358.95627 * 8 6 5 23 23 N 1.33261 * 119.03300 * 0.02562 * 5 4 3 24 24 C 1.32063 * 120.82459 * 359.97438 * 23 5 4 25 25 O 1.35469 * 119.07926 * 180.02562 * 24 23 5 26 26 C 1.42903 * 116.99877 * 179.97438 * 25 24 23 27 27 N 1.32400 * 121.84152 * 0.02562 * 24 23 5 28 28 H 1.09011 * 109.47297 * 300.00189 * 1 2 3 29 29 H 1.08999 * 109.47128 * 59.99716 * 1 2 3 30 30 H 1.08995 * 109.47497 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.83925 * 0.04367 * 4 3 2 32 32 H 1.09000 * 109.63000 * 248.51813 * 9 8 6 33 33 H 1.08997 * 109.63301 * 9.10733 * 9 8 6 34 34 H 1.09006 * 109.64931 * 294.07933 * 10 9 8 35 35 H 1.09002 * 109.42227 * 173.94544 * 10 9 8 36 36 H 1.08998 * 109.46734 * 54.30056 * 12 11 10 37 37 H 1.09004 * 109.46946 * 174.29648 * 12 11 10 38 38 H 0.96990 * 119.99811 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.49579 * 303.14639 * 21 11 10 40 40 H 1.09003 * 109.52009 * 183.07696 * 21 11 10 41 41 H 1.09002 * 109.62897 * 350.89634 * 22 8 6 42 42 H 1.09006 * 109.62725 * 111.47643 * 22 8 6 43 43 H 1.09001 * 109.47216 * 179.97438 * 26 25 24 44 44 H 1.08992 * 109.47223 * 300.00126 * 26 25 24 45 45 H 1.09000 * 109.47226 * 60.00038 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4382 1.2915 0.0005 5 6 4.0233 2.5537 0.0011 6 6 5.5008 2.6988 0.0022 7 8 6.2059 1.7320 0.2113 8 7 6.0597 3.9032 -0.2288 9 6 7.5202 4.0750 -0.2036 10 6 7.9446 4.7837 -1.4997 11 7 7.1761 6.0269 -1.6461 12 6 7.6718 6.8223 -2.7774 13 6 9.0739 7.2912 -2.4855 14 1 9.5494 7.0246 -1.5531 15 6 9.7502 8.0595 -3.4093 16 7 10.9740 8.4683 -3.1548 17 14 8.9286 8.5187 -5.0228 18 1 8.1990 9.8018 -4.8592 19 1 9.9614 8.6680 -6.0793 20 1 7.9722 7.4517 -5.4126 21 6 5.7397 5.7523 -1.7851 22 6 5.2251 5.0820 -0.5067 23 7 3.2382 3.6305 0.0016 24 6 1.9232 3.5092 0.0010 25 8 1.1589 4.6277 0.0010 26 6 -0.2584 4.4449 -0.0001 27 7 1.3309 2.3251 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 4.0466 0.3993 0.0003 32 1 7.8029 4.6803 0.6577 33 1 8.0027 3.0994 -0.1433 34 1 7.7510 4.1337 -2.3531 35 1 9.0084 5.0170 -1.4537 36 1 7.6738 6.2097 -3.6789 37 1 7.0235 7.6858 -2.9262 38 1 11.4496 9.0092 -3.8045 39 1 5.5767 5.0889 -2.6345 40 1 5.2039 6.6878 -1.9462 41 1 4.1894 4.7726 -0.6469 42 1 5.2915 5.7822 0.3261 43 1 -0.7503 5.4176 0.0005 44 1 -0.5524 3.8893 -0.8905 45 1 -0.5537 3.8884 0.8894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189090708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:42:51 Heat of formation + Delta-G solvation = -32.948723 kcal Electronic energy + Delta-G solvation = -29424.835127 eV Core-core repulsion = 25251.526718 eV Total energy + Delta-G solvation = -4173.308409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.87641 -41.20770 -40.22467 -39.23768 -38.71658 -36.16144 -34.80271 -34.30509 -32.69470 -32.05573 -30.63151 -29.12368 -28.10931 -27.55766 -25.96092 -25.19046 -24.38220 -23.45941 -22.34797 -20.98382 -19.95107 -19.52360 -18.90614 -18.51372 -17.96265 -17.29935 -17.19126 -16.91786 -16.76315 -16.52773 -16.45752 -16.04288 -15.97888 -15.63018 -15.25643 -15.11686 -14.93907 -14.78061 -14.47856 -14.27932 -13.73984 -13.31925 -13.07312 -12.90508 -12.85625 -12.84631 -12.57754 -12.41770 -12.27119 -12.22125 -12.13677 -11.89775 -11.83284 -11.64708 -11.44654 -11.38938 -10.77034 -10.20747 -10.01578 -9.83383 -9.06147 -8.26896 -6.30167 -0.80450 -0.22182 1.17437 1.35742 1.37015 1.43074 1.47364 1.57016 1.85950 2.35315 2.45908 2.59776 3.05062 3.08674 3.20802 3.36713 3.81448 3.90825 4.04660 4.09226 4.22634 4.34588 4.35462 4.37407 4.41516 4.41680 4.42436 4.51173 4.61098 4.74662 4.76922 4.80508 4.85786 4.96770 4.98121 5.07076 5.16574 5.37215 5.43677 5.52991 5.58195 5.93021 6.02461 6.20157 6.30343 6.60058 6.62542 6.75931 6.81820 7.33273 8.89374 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.002704 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.839847 B =10353.918241 C =11250.947286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.295 6.295 3 C 0.411 3.589 4 C -0.220 4.220 5 C 0.193 3.807 6 C 0.569 3.431 7 O -0.551 6.551 8 N -0.581 5.581 9 C 0.122 3.878 10 C 0.057 3.943 11 N -0.540 5.540 12 C 0.172 3.828 13 C -0.515 4.515 14 H 0.042 0.958 15 C 0.009 3.991 16 N -0.946 5.946 17 Si 0.946 3.054 18 H -0.263 1.263 19 H -0.283 1.283 20 H -0.255 1.255 21 C 0.039 3.961 22 C 0.080 3.920 23 N -0.527 5.527 24 C 0.532 3.468 25 O -0.292 6.292 26 C 0.037 3.963 27 N -0.601 5.601 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.131 0.869 31 H 0.175 0.825 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.022 0.978 35 H 0.077 0.923 36 H -0.016 1.016 37 H 0.033 0.967 38 H 0.267 0.733 39 H 0.022 0.978 40 H 0.093 0.907 41 H 0.168 0.832 42 H 0.075 0.925 43 H 0.132 0.868 44 H 0.069 0.931 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.254 -15.413 6.376 33.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.198 6.198 3 C 0.222 3.778 4 C -0.245 4.245 5 C 0.050 3.950 6 C 0.355 3.645 7 O -0.429 6.429 8 N -0.312 5.312 9 C 0.000 4.000 10 C -0.072 4.072 11 N -0.265 5.265 12 C 0.045 3.955 13 C -0.553 4.553 14 H 0.060 0.940 15 C -0.189 4.189 16 N -0.587 5.587 17 Si 0.770 3.230 18 H -0.188 1.188 19 H -0.209 1.209 20 H -0.179 1.179 21 C -0.090 4.090 22 C -0.042 4.042 23 N -0.261 5.261 24 C 0.230 3.770 25 O -0.192 6.192 26 C -0.058 4.058 27 N -0.348 5.348 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.149 0.851 31 H 0.192 0.808 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.040 0.960 35 H 0.095 0.905 36 H 0.002 0.998 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.112 0.888 41 H 0.183 0.817 42 H 0.093 0.907 43 H 0.150 0.850 44 H 0.087 0.913 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -29.150 -14.741 6.848 33.375 hybrid contribution 0.473 -0.522 -1.453 1.615 sum -28.677 -15.263 5.394 32.931 Atomic orbital electron populations 1.23359 0.74112 1.05847 1.03287 1.86324 1.25743 1.22133 1.85567 1.19667 0.88573 0.84573 0.84998 1.21728 0.93104 0.99957 1.09687 1.20931 0.93329 0.88332 0.92377 1.17833 0.85757 0.82963 0.77935 1.90776 1.62139 1.38615 1.51326 1.48212 1.08050 1.08750 1.66148 1.21907 0.78901 1.01266 0.97903 1.22333 0.99293 0.89703 0.95835 1.61861 1.02712 1.18009 1.43935 1.19945 0.94801 0.92780 0.87982 1.21242 0.98578 1.31810 1.03708 0.93950 1.25821 0.95295 0.95578 1.02193 1.70044 1.13099 1.37988 1.37581 0.85729 0.78657 0.79685 0.78936 1.18777 1.20898 1.17857 1.22619 0.88944 1.00420 0.97016 1.23424 0.98823 0.85539 0.96455 1.67486 1.03180 1.31474 1.23983 1.20544 0.85940 0.83961 0.86514 1.86190 1.22182 1.24665 1.86178 1.23367 0.73417 1.05672 1.03317 1.67603 1.41687 0.98467 1.27068 0.91295 0.91371 0.85111 0.80784 0.89902 0.88446 0.96009 0.90498 0.99841 0.94848 0.92450 0.95926 0.88826 0.81693 0.90653 0.85028 0.91260 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.41 113.37 1.18 1.38 16 2 O -0.30 -4.38 10.49 -88.12 -0.92 -5.30 16 3 C 0.41 7.64 7.53 84.92 0.64 8.28 16 4 C -0.22 -4.73 9.67 22.82 0.22 -4.51 16 5 C 0.19 4.89 6.63 41.86 0.28 5.17 16 6 C 0.57 17.30 7.70 86.97 0.67 17.97 16 7 O -0.55 -18.86 15.92 -3.63 -0.06 -18.92 16 8 N -0.58 -18.21 3.00 -819.75 -2.46 -20.67 16 9 C 0.12 4.09 6.63 86.50 0.57 4.67 16 10 C 0.06 2.27 5.47 86.54 0.47 2.74 16 11 N -0.54 -22.58 4.62 -898.85 -4.15 -26.73 16 12 C 0.17 8.28 3.79 85.55 0.32 8.60 16 13 C -0.52 -29.71 8.96 25.60 0.23 -29.48 16 14 H 0.04 2.71 7.37 -2.91 -0.02 2.69 16 15 C 0.01 0.50 5.47 84.65 0.46 0.96 16 16 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 17 Si 0.95 44.15 27.47 68.60 1.88 46.04 16 18 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 20 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 21 C 0.04 1.30 5.62 86.38 0.49 1.78 16 22 C 0.08 2.33 6.19 86.35 0.53 2.87 16 23 N -0.53 -12.84 6.26 -302.90 -1.90 -14.74 16 24 C 0.53 11.18 8.48 180.62 1.53 12.71 16 25 O -0.29 -5.27 10.56 -87.68 -0.93 -6.19 16 26 C 0.04 0.33 10.36 113.37 1.17 1.50 16 27 N -0.60 -10.87 8.14 -426.41 -3.47 -14.34 16 28 H 0.07 0.46 8.12 -2.38 -0.02 0.44 16 29 H 0.07 0.47 8.12 -2.39 -0.02 0.45 16 30 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.17 3.53 7.76 -2.91 -0.02 3.51 16 32 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.10 3.15 7.05 -2.39 -0.02 3.13 16 34 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.08 3.43 6.67 -2.39 -0.02 3.42 16 36 H -0.02 -0.78 7.18 -2.39 -0.02 -0.80 16 37 H 0.03 1.56 7.40 -2.38 -0.02 1.54 16 38 H 0.27 15.55 8.31 -92.72 -0.77 14.78 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.09 2.90 7.99 -2.39 -0.02 2.88 16 41 H 0.17 4.49 3.84 -75.06 -0.29 4.20 16 42 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 43 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 45 H 0.07 0.54 8.09 -2.39 -0.02 0.52 16 Total: -1.00 -72.17 368.92 -2.25 -74.41 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.68 Total: 10.70 kcal Atomic # 6 Polarization: 25.86 SS G_CDS: 8.78 Total: 34.64 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -11.68 Total: -135.37 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -1.91 Total: -30.42 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.04 kcal Total: -72.17 -2.25 -74.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189090708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.464 kcal (2) G-P(sol) polarization free energy of solvation -72.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds