Wall clock time and date at job start Sat Apr 11 2020 04:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99593 * 2 1 4 4 C 1.53047 * 109.45672 * 149.99986 * 3 2 1 5 5 C 1.53198 * 109.30841 * 181.38531 * 4 3 2 6 6 N 1.46925 * 108.77700 * 305.36480 * 5 4 3 7 7 C 1.34780 * 120.63287 * 233.58665 * 6 5 4 8 8 O 1.21358 * 119.99786 * 8.72780 * 7 6 5 9 9 C 1.49341 * 120.00255 * 188.72491 * 7 6 5 10 10 O 1.21391 * 119.99732 * 6.75170 * 9 7 6 11 11 N 1.34777 * 120.00153 * 186.75041 * 9 7 6 12 12 C 1.39923 * 119.99697 * 179.97438 * 11 9 7 13 13 C 1.40453 * 125.98540 * 359.97438 * 12 11 9 14 14 C 1.35222 * 107.86838 * 179.73397 * 13 12 11 15 15 N 1.34987 * 107.87509 * 0.42517 * 14 13 12 16 16 C 1.46498 * 125.96965 * 179.83993 * 15 14 13 17 17 C 1.50702 * 109.46902 * 124.71603 * 16 15 14 18 18 H 1.08002 * 120.00426 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99757 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00302 * 359.72235 * 19 17 16 21 21 Si 1.86798 * 120.00165 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47658 * 179.72615 * 21 19 17 23 23 H 1.48500 * 109.47560 * 299.73049 * 21 19 17 24 24 H 1.48502 * 109.47029 * 59.72413 * 21 19 17 25 25 N 1.31273 * 125.97782 * 179.97438 * 12 11 9 26 26 C 1.46934 * 118.73963 * 53.86050 * 6 5 4 27 27 C 1.53039 * 109.46183 * 270.06597 * 3 2 1 28 28 H 1.09009 * 109.46668 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47063 * 299.99308 * 1 2 3 30 30 H 1.08993 * 109.47658 * 60.00261 * 1 2 3 31 31 H 1.09000 * 109.45388 * 30.03509 * 3 2 1 32 32 H 1.09004 * 109.49687 * 61.43811 * 4 3 2 33 33 H 1.08998 * 109.52491 * 301.34987 * 4 3 2 34 34 H 1.09003 * 109.58446 * 185.57621 * 5 4 3 35 35 H 1.08993 * 109.70413 * 65.22379 * 5 4 3 36 36 H 0.97003 * 119.99404 * 0.02562 * 11 9 7 37 37 H 1.08000 * 126.07064 * 359.97438 * 13 12 11 38 38 H 1.08004 * 126.06077 * 180.25866 * 14 13 12 39 39 H 1.09000 * 109.47395 * 4.71326 * 16 15 14 40 40 H 1.09002 * 109.47065 * 244.71393 * 16 15 14 41 41 H 0.97004 * 119.99927 * 0.27689 * 20 19 17 42 42 H 1.09005 * 109.58186 * 65.92556 * 26 6 5 43 43 H 1.08990 * 109.58510 * 186.35135 * 26 6 5 44 44 H 1.09000 * 109.49709 * 298.56945 * 27 3 2 45 45 H 1.08999 * 109.49388 * 58.66506 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.3591 1.2630 0.7215 5 6 3.9630 2.6707 0.7499 6 7 4.0299 3.1843 -0.6250 7 6 5.1912 3.6463 -1.1298 8 8 6.2241 3.4967 -0.5105 9 6 5.2067 4.3421 -2.4511 10 8 4.1624 4.6008 -3.0131 11 7 6.3803 4.6829 -3.0194 12 6 6.3949 5.3344 -4.2577 13 6 5.2676 5.6918 -5.0154 14 6 5.7009 6.3054 -6.1398 15 7 7.0502 6.3294 -6.1049 16 6 7.9274 6.9002 -7.1300 17 6 8.8434 7.9164 -6.4981 18 1 8.7783 8.1173 -5.4389 19 6 9.7645 8.5897 -7.2722 20 7 9.8475 8.3412 -8.5609 21 14 10.8995 9.8499 -6.4891 22 1 11.7937 10.4232 -7.5268 23 1 10.0892 10.9348 -5.8796 24 1 11.7180 9.1934 -5.4382 25 7 7.4646 5.7185 -4.9145 26 6 2.8056 3.1905 -1.4373 27 6 2.2159 1.7720 -1.4430 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5137 -0.8899 31 1 1.3449 1.9990 0.5144 32 1 4.0332 0.5886 0.1933 33 1 3.2154 0.9082 1.7421 34 1 4.9664 2.6293 1.1738 35 1 3.3375 3.3268 1.3550 36 1 7.2149 4.4758 -2.5704 37 1 4.2372 5.5124 -4.7459 38 1 5.0781 6.7031 -6.9274 39 1 7.3228 7.3835 -7.8975 40 1 8.5221 6.1065 -7.5823 41 1 9.2579 7.6871 -8.9677 42 1 2.0855 3.8868 -1.0074 43 1 3.0450 3.4924 -2.4568 44 1 2.9007 1.0927 -1.9507 45 1 1.2580 1.7796 -1.9629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336888564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:42:27 Heat of formation + Delta-G solvation = -13.030641 kcal Electronic energy + Delta-G solvation = -28559.875203 eV Core-core repulsion = 24387.430507 eV Total energy + Delta-G solvation = -4172.444696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.43216 -40.54135 -39.30143 -38.47373 -36.90996 -35.11309 -33.74170 -32.42444 -31.54355 -31.02055 -29.53692 -27.61625 -26.78521 -25.72187 -24.25357 -23.65547 -22.83976 -21.67443 -20.91836 -20.12174 -19.60595 -17.90503 -17.34852 -17.25223 -16.97210 -16.58191 -16.31052 -15.73164 -15.57359 -15.43609 -15.07138 -14.84811 -14.56447 -14.21858 -13.95937 -13.83242 -13.70088 -13.31126 -13.08153 -12.88277 -12.68383 -12.57249 -12.32706 -12.01244 -11.73080 -11.68629 -11.62739 -11.32784 -11.17972 -11.01111 -10.86439 -10.60903 -10.17664 -10.14036 -10.01133 -9.30447 -9.18735 -9.05578 -8.61505 -8.35791 -7.68867 -6.61732 -4.36173 1.06728 1.89803 2.52336 2.86915 2.94263 3.27431 3.36688 3.38835 3.52784 3.56733 3.61695 4.13015 4.29448 4.38425 4.38886 4.58703 4.62854 4.82790 4.87847 4.91612 4.96931 5.08976 5.11661 5.23617 5.26837 5.29034 5.35721 5.44852 5.51054 5.64795 5.66337 5.81482 5.93847 6.01353 6.24050 6.34198 6.48810 6.67158 6.73216 6.75201 7.10271 7.16799 7.47597 7.62223 7.72349 7.82915 8.29122 8.40135 8.56797 9.31890 10.76027 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.028817 B = 0.002036 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.424956 B =13747.740365 C =14427.641719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.087 3.913 4 C -0.130 4.130 5 C 0.111 3.889 6 N -0.584 5.584 7 C 0.519 3.481 8 O -0.515 6.515 9 C 0.516 3.484 10 O -0.493 6.493 11 N -0.595 5.595 12 C 0.251 3.749 13 C -0.283 4.283 14 C 0.053 3.947 15 N -0.312 5.312 16 C 0.248 3.752 17 C -0.610 4.610 18 H 0.064 0.936 19 C 0.024 3.976 20 N -0.903 5.903 21 Si 1.077 2.923 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.285 1.285 25 N -0.291 5.291 26 C 0.071 3.929 27 C -0.156 4.156 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.424 0.576 37 H 0.163 0.837 38 H 0.171 0.829 39 H 0.048 0.952 40 H 0.037 0.963 41 H 0.267 0.733 42 H 0.072 0.928 43 H 0.147 0.853 44 H 0.076 0.924 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.536 -13.687 16.913 29.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.029 3.971 4 C -0.168 4.168 5 C -0.011 4.011 6 N -0.318 5.318 7 C 0.301 3.699 8 O -0.390 6.390 9 C 0.297 3.703 10 O -0.368 6.368 11 N -0.242 5.242 12 C -0.002 4.002 13 C -0.314 4.314 14 C -0.097 4.097 15 N -0.094 5.094 16 C 0.130 3.870 17 C -0.648 4.648 18 H 0.082 0.918 19 C -0.181 4.181 20 N -0.539 5.539 21 Si 0.903 3.097 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.211 1.211 25 N -0.122 5.122 26 C -0.051 4.051 27 C -0.195 4.195 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.262 0.738 37 H 0.180 0.820 38 H 0.188 0.812 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.164 0.836 44 H 0.095 0.905 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.018 -12.595 16.426 26.797 hybrid contribution -2.070 -1.031 0.547 2.376 sum -19.088 -13.627 16.974 28.950 Atomic orbital electron populations 1.22796 0.81029 1.02789 1.00009 1.87927 1.19685 1.27724 1.95072 1.22184 0.94650 0.84663 0.95604 1.21980 0.95855 0.97128 1.01885 1.21740 1.03564 0.93806 0.81952 1.47922 1.09163 1.60215 1.14514 1.19798 0.84011 0.79914 0.86222 1.90788 1.31382 1.55960 1.60858 1.19962 0.83733 0.80573 0.86051 1.90435 1.30640 1.52476 1.63222 1.42029 1.09809 1.54739 1.17670 1.19011 0.93634 0.99786 0.87776 1.21517 0.99735 1.13422 0.96697 1.22593 0.85612 1.01282 1.00192 1.48882 1.04721 1.41181 1.14594 1.19821 0.89293 0.94031 0.83860 1.22094 1.21219 1.23815 0.97667 0.91779 1.25931 0.97579 0.99562 0.95042 1.70860 1.38729 1.33278 1.10986 0.83417 0.75799 0.75264 0.75170 1.20502 1.21219 1.21075 1.77437 1.19773 1.18468 0.96481 1.22993 0.85166 0.96066 1.00835 1.22542 1.02337 0.97249 0.97363 0.89641 0.94050 0.93911 0.91873 0.90296 0.89694 0.87908 0.90575 0.73811 0.81953 0.81221 0.93436 0.94572 0.92280 0.90938 0.83613 0.90515 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.39 -3.22 10.35 -35.23 -0.36 -3.59 16 3 C 0.09 0.62 2.57 -26.69 -0.07 0.55 16 4 C -0.13 -0.92 5.73 -26.60 -0.15 -1.07 16 5 C 0.11 0.85 6.44 -3.71 -0.02 0.83 16 6 N -0.58 -5.74 2.97 -173.05 -0.51 -6.25 16 7 C 0.52 6.50 7.73 -11.63 -0.09 6.41 16 8 O -0.51 -7.39 15.93 5.49 0.09 -7.30 16 9 C 0.52 7.27 7.71 -11.64 -0.09 7.18 16 10 O -0.49 -7.10 10.30 5.46 0.06 -7.04 16 11 N -0.59 -9.48 5.43 -11.58 -0.06 -9.54 16 12 C 0.25 4.88 8.10 -154.56 -1.25 3.62 16 13 C -0.28 -5.17 9.60 -39.82 -0.38 -5.55 16 14 C 0.05 1.00 11.43 -17.24 -0.20 0.80 16 15 N -0.31 -7.06 3.67 -62.56 -0.23 -7.29 16 16 C 0.25 6.13 5.57 -5.19 -0.03 6.10 16 17 C -0.61 -16.93 9.24 -34.44 -0.32 -17.25 16 18 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 19 C 0.02 0.66 5.46 -17.82 -0.10 0.56 16 20 N -0.90 -26.01 13.65 55.43 0.76 -25.26 16 21 Si 1.08 24.78 29.90 -169.99 -5.08 19.70 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 N -0.29 -6.61 12.42 31.41 0.39 -6.22 16 26 C 0.07 0.60 6.01 -3.48 -0.02 0.58 16 27 C -0.16 -1.19 5.71 -26.39 -0.15 -1.34 16 28 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.04 0.18 8.08 -51.93 -0.42 -0.24 16 30 H 0.04 0.20 7.84 -51.93 -0.41 -0.20 16 31 H 0.06 0.37 7.79 -51.93 -0.40 -0.03 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.87 7.01 -51.93 -0.36 0.50 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.42 6.27 8.31 -40.82 -0.34 5.93 16 37 H 0.16 2.71 5.91 -52.49 -0.31 2.40 16 38 H 0.17 2.54 8.06 -52.48 -0.42 2.12 16 39 H 0.05 1.13 7.94 -51.93 -0.41 0.71 16 40 H 0.04 0.93 8.00 -51.93 -0.42 0.52 16 41 H 0.27 7.49 7.22 -40.82 -0.29 7.20 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.15 1.51 4.30 -54.86 -0.24 1.28 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.52 7.84 -51.93 -0.41 0.11 16 LS Contribution 373.03 15.07 5.62 5.62 Total: -1.00 -32.65 373.03 -7.30 -39.95 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -6.18 Total: 4.53 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.78 Total: 2.68 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.34 Total: -54.56 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.22 Total: -17.93 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.70 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.65 -7.30 -39.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336888564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.920 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds