Wall clock time and date at job start Sat Apr 11 2020 04:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99593 * 2 1 4 4 C 1.53047 * 109.45672 * 149.99986 * 3 2 1 5 5 C 1.53198 * 109.30841 * 181.38531 * 4 3 2 6 6 N 1.46925 * 108.77700 * 305.36480 * 5 4 3 7 7 C 1.34780 * 120.63287 * 233.58665 * 6 5 4 8 8 O 1.21358 * 119.99786 * 8.72780 * 7 6 5 9 9 C 1.49341 * 120.00255 * 188.72491 * 7 6 5 10 10 O 1.21391 * 119.99732 * 6.75170 * 9 7 6 11 11 N 1.34777 * 120.00153 * 186.75041 * 9 7 6 12 12 C 1.39923 * 119.99697 * 179.97438 * 11 9 7 13 13 C 1.40453 * 125.98540 * 359.97438 * 12 11 9 14 14 C 1.35222 * 107.86838 * 179.73397 * 13 12 11 15 15 N 1.34987 * 107.87509 * 0.42517 * 14 13 12 16 16 C 1.46498 * 125.96965 * 179.83993 * 15 14 13 17 17 C 1.50702 * 109.46902 * 124.71603 * 16 15 14 18 18 H 1.08002 * 120.00426 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99757 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00302 * 359.72235 * 19 17 16 21 21 Si 1.86798 * 120.00165 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47658 * 179.72615 * 21 19 17 23 23 H 1.48500 * 109.47560 * 299.73049 * 21 19 17 24 24 H 1.48502 * 109.47029 * 59.72413 * 21 19 17 25 25 N 1.31273 * 125.97782 * 179.97438 * 12 11 9 26 26 C 1.46934 * 118.73963 * 53.86050 * 6 5 4 27 27 C 1.53039 * 109.46183 * 270.06597 * 3 2 1 28 28 H 1.09009 * 109.46668 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47063 * 299.99308 * 1 2 3 30 30 H 1.08993 * 109.47658 * 60.00261 * 1 2 3 31 31 H 1.09000 * 109.45388 * 30.03509 * 3 2 1 32 32 H 1.09004 * 109.49687 * 61.43811 * 4 3 2 33 33 H 1.08998 * 109.52491 * 301.34987 * 4 3 2 34 34 H 1.09003 * 109.58446 * 185.57621 * 5 4 3 35 35 H 1.08993 * 109.70413 * 65.22379 * 5 4 3 36 36 H 0.97003 * 119.99404 * 0.02562 * 11 9 7 37 37 H 1.08000 * 126.07064 * 359.97438 * 13 12 11 38 38 H 1.08004 * 126.06077 * 180.25866 * 14 13 12 39 39 H 1.09000 * 109.47395 * 4.71326 * 16 15 14 40 40 H 1.09002 * 109.47065 * 244.71393 * 16 15 14 41 41 H 0.97004 * 119.99927 * 0.27689 * 20 19 17 42 42 H 1.09005 * 109.58186 * 65.92556 * 26 6 5 43 43 H 1.08990 * 109.58510 * 186.35135 * 26 6 5 44 44 H 1.09000 * 109.49709 * 298.56945 * 27 3 2 45 45 H 1.08999 * 109.49388 * 58.66506 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.3591 1.2630 0.7215 5 6 3.9630 2.6707 0.7499 6 7 4.0299 3.1843 -0.6250 7 6 5.1912 3.6463 -1.1298 8 8 6.2241 3.4967 -0.5105 9 6 5.2067 4.3421 -2.4511 10 8 4.1624 4.6008 -3.0131 11 7 6.3803 4.6829 -3.0194 12 6 6.3949 5.3344 -4.2577 13 6 5.2676 5.6918 -5.0154 14 6 5.7009 6.3054 -6.1398 15 7 7.0502 6.3294 -6.1049 16 6 7.9274 6.9002 -7.1300 17 6 8.8434 7.9164 -6.4981 18 1 8.7783 8.1173 -5.4389 19 6 9.7645 8.5897 -7.2722 20 7 9.8475 8.3412 -8.5609 21 14 10.8995 9.8499 -6.4891 22 1 11.7937 10.4232 -7.5268 23 1 10.0892 10.9348 -5.8796 24 1 11.7180 9.1934 -5.4382 25 7 7.4646 5.7185 -4.9145 26 6 2.8056 3.1905 -1.4373 27 6 2.2159 1.7720 -1.4430 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5137 -0.8899 31 1 1.3449 1.9990 0.5144 32 1 4.0332 0.5886 0.1933 33 1 3.2154 0.9082 1.7421 34 1 4.9664 2.6293 1.1738 35 1 3.3375 3.3268 1.3550 36 1 7.2149 4.4758 -2.5704 37 1 4.2372 5.5124 -4.7459 38 1 5.0781 6.7031 -6.9274 39 1 7.3228 7.3835 -7.8975 40 1 8.5221 6.1065 -7.5823 41 1 9.2579 7.6871 -8.9677 42 1 2.0855 3.8868 -1.0074 43 1 3.0450 3.4924 -2.4568 44 1 2.9007 1.0927 -1.9507 45 1 1.2580 1.7796 -1.9629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336888564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:42:26 Heat of formation + Delta-G solvation = -35.252803 kcal Electronic energy + Delta-G solvation = -28560.838828 eV Core-core repulsion = 24387.430507 eV Total energy + Delta-G solvation = -4173.408321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.63841 -41.83578 -40.19167 -39.39852 -37.69931 -36.51632 -35.60139 -33.14848 -32.77247 -32.18640 -31.09667 -28.66923 -27.95054 -26.81909 -25.32375 -24.72164 -24.16819 -22.79758 -22.11685 -21.36854 -20.67418 -19.27580 -18.90638 -18.36979 -18.07169 -17.48727 -17.38123 -16.89655 -16.48000 -16.15964 -16.11411 -15.96310 -15.67637 -15.52470 -15.44826 -15.02827 -14.75006 -14.47289 -14.15330 -13.98231 -13.81131 -13.74025 -13.41979 -13.28536 -13.24346 -12.65202 -12.57092 -12.33718 -12.24500 -12.15890 -11.97994 -11.96104 -11.66704 -11.56256 -11.03898 -10.72270 -10.69797 -10.23375 -9.99610 -9.90625 -9.30480 -8.78866 -6.56348 -0.04595 0.76413 1.04809 1.51056 1.57128 1.64398 1.68969 1.79268 2.16251 2.34972 2.48377 2.78378 3.00384 3.00896 3.68882 3.79747 3.80044 3.96507 4.07090 4.10303 4.25610 4.32952 4.44251 4.46486 4.55097 4.57158 4.60252 4.68642 4.71155 4.75137 4.76876 4.80361 4.88647 4.90659 5.06416 5.09816 5.20980 5.32931 5.52563 5.69370 5.77327 5.89805 5.97227 6.24973 6.27463 6.39969 6.44004 6.67105 6.86401 7.18632 8.58279 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.028817 B = 0.002036 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.424956 B =13747.740365 C =14427.641719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.087 3.913 4 C -0.125 4.125 5 C 0.110 3.890 6 N -0.574 5.574 7 C 0.521 3.479 8 O -0.538 6.538 9 C 0.519 3.481 10 O -0.492 6.492 11 N -0.600 5.600 12 C 0.260 3.740 13 C -0.282 4.282 14 C 0.059 3.941 15 N -0.339 5.339 16 C 0.258 3.742 17 C -0.623 4.623 18 H 0.044 0.956 19 C -0.018 4.018 20 N -0.922 5.922 21 Si 1.118 2.882 22 H -0.275 1.275 23 H -0.270 1.270 24 H -0.278 1.278 25 N -0.342 5.342 26 C 0.071 3.929 27 C -0.151 4.151 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.427 0.573 37 H 0.182 0.818 38 H 0.208 0.792 39 H 0.059 0.941 40 H 0.017 0.983 41 H 0.261 0.739 42 H 0.095 0.905 43 H 0.130 0.870 44 H 0.057 0.943 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.858 -13.590 18.532 31.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.029 3.971 4 C -0.164 4.164 5 C -0.011 4.011 6 N -0.307 5.307 7 C 0.302 3.698 8 O -0.416 6.416 9 C 0.301 3.699 10 O -0.366 6.366 11 N -0.249 5.249 12 C 0.006 3.994 13 C -0.312 4.312 14 C -0.089 4.089 15 N -0.121 5.121 16 C 0.139 3.861 17 C -0.661 4.661 18 H 0.063 0.937 19 C -0.218 4.218 20 N -0.558 5.558 21 Si 0.939 3.061 22 H -0.200 1.200 23 H -0.196 1.196 24 H -0.203 1.203 25 N -0.173 5.173 26 C -0.049 4.049 27 C -0.189 4.189 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.265 0.735 37 H 0.199 0.801 38 H 0.224 0.776 39 H 0.077 0.923 40 H 0.035 0.965 41 H 0.071 0.929 42 H 0.113 0.887 43 H 0.147 0.853 44 H 0.076 0.924 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.418 -12.535 18.068 29.337 hybrid contribution -1.547 -1.201 0.131 1.963 sum -20.965 -13.736 18.199 30.974 Atomic orbital electron populations 1.22968 0.79638 1.03639 1.00966 1.87902 1.21327 1.28370 1.95168 1.22217 0.94892 0.84826 0.95137 1.21937 0.95548 0.96202 1.02680 1.21951 1.03835 0.94686 0.80641 1.48085 1.08598 1.58592 1.15423 1.19478 0.84648 0.80288 0.85368 1.90786 1.32293 1.57325 1.61160 1.20351 0.83041 0.80030 0.86473 1.90442 1.30522 1.52159 1.63517 1.42168 1.10828 1.55037 1.16824 1.19330 0.93351 0.98319 0.88391 1.21792 1.00167 1.13007 0.96270 1.23287 0.84395 1.00104 1.01128 1.48635 1.05718 1.42997 1.14751 1.19468 0.89367 0.92799 0.84487 1.22287 1.22228 1.24705 0.96848 0.93714 1.27230 0.98695 1.00935 0.94944 1.70950 1.39284 1.33917 1.11667 0.82890 0.74597 0.73806 0.74762 1.19966 1.19552 1.20330 1.77343 1.21769 1.20708 0.97522 1.23005 0.84864 0.97245 0.99830 1.22485 1.02401 0.96014 0.98044 0.89017 0.92735 0.93244 0.89810 0.92237 0.88018 0.88787 0.87795 0.73453 0.80060 0.77559 0.92334 0.96472 0.92893 0.88707 0.85329 0.92423 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 113.37 1.23 1.43 16 2 O -0.41 -5.99 10.35 -148.98 -1.54 -7.53 16 3 C 0.09 1.01 2.57 30.62 0.08 1.09 16 4 C -0.13 -1.52 5.73 30.68 0.18 -1.34 16 5 C 0.11 1.43 6.44 86.36 0.56 1.99 16 6 N -0.57 -10.27 2.97 -819.75 -2.43 -12.70 16 7 C 0.52 12.63 7.73 87.23 0.67 13.31 16 8 O -0.54 -15.31 15.93 -3.27 -0.05 -15.37 16 9 C 0.52 14.25 7.71 87.24 0.67 14.92 16 10 O -0.49 -13.44 10.30 -3.37 -0.03 -13.48 16 11 N -0.60 -19.13 5.43 -308.90 -1.68 -20.81 16 12 C 0.26 10.12 8.10 133.40 1.08 11.20 16 13 C -0.28 -9.96 9.60 22.11 0.21 -9.75 16 14 C 0.06 2.15 11.43 83.51 0.95 3.11 16 15 N -0.34 -15.49 3.67 -351.84 -1.29 -16.79 16 16 C 0.26 13.03 5.57 85.63 0.48 13.51 16 17 C -0.62 -35.22 9.24 25.60 0.24 -34.98 16 18 H 0.04 2.66 7.81 -2.91 -0.02 2.63 16 19 C -0.02 -1.01 5.46 84.65 0.46 -0.55 16 20 N -0.92 -53.57 13.65 21.45 0.29 -53.28 16 21 Si 1.12 49.80 29.90 68.60 2.05 51.85 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 25 N -0.34 -15.93 12.42 -54.55 -0.68 -16.60 16 26 C 0.07 1.06 6.01 86.51 0.52 1.58 16 27 C -0.15 -1.98 5.71 30.82 0.18 -1.81 16 28 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.05 0.32 8.08 -2.39 -0.02 0.30 16 30 H 0.05 0.34 7.84 -2.39 -0.02 0.33 16 31 H 0.08 0.65 7.79 -2.39 -0.02 0.63 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 1.45 7.01 -2.39 -0.02 1.44 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.43 12.92 8.31 -92.71 -0.77 12.15 16 37 H 0.18 5.66 5.91 -2.91 -0.02 5.64 16 38 H 0.21 5.69 8.06 -2.91 -0.02 5.66 16 39 H 0.06 2.80 7.94 -2.39 -0.02 2.78 16 40 H 0.02 0.93 8.00 -2.39 -0.02 0.91 16 41 H 0.26 14.96 7.22 -92.71 -0.67 14.29 16 42 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.13 2.44 4.30 -48.73 -0.21 2.23 16 44 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.09 0.98 7.84 -2.39 -0.02 0.96 16 Total: -1.00 -71.14 373.03 2.30 -68.84 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.16 Total: 22.17 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 7.50 Total: 13.69 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -5.78 Total: -120.18 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.63 Total: -36.37 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.05 Total: 51.85 kcal Total: -71.14 2.30 -68.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336888564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.589 kcal (2) G-P(sol) polarization free energy of solvation -71.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds