Wall clock time and date at job start Sat Apr 11 2020 04:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35953 * 116.99881 * 2 1 4 4 C 1.38655 * 120.06417 * 359.97438 * 3 2 1 5 5 C 1.38186 * 119.97035 * 179.74008 * 4 3 2 6 6 C 1.38259 * 120.09407 * 0.53498 * 5 4 3 7 7 C 1.50695 * 119.93989 * 179.76370 * 6 5 4 8 8 C 1.50705 * 109.47269 * 269.72521 * 7 6 5 9 9 O 1.21284 * 119.99964 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00333 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00244 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47016 * 173.73483 * 11 10 8 13 13 H 1.09004 * 109.87232 * 57.78408 * 12 11 10 14 14 C 1.54324 * 109.88213 * 178.79572 * 12 11 10 15 15 C 1.55401 * 102.83192 * 141.51966 * 14 12 11 16 16 C 1.54908 * 101.66524 * 324.66362 * 15 14 12 17 17 N 1.47023 * 109.88827 * 296.76356 * 12 11 10 18 18 C 1.36940 * 125.64473 * 61.60681 * 17 12 11 19 19 H 1.07997 * 119.99927 * 322.94248 * 18 17 12 20 20 C 1.38814 * 119.99903 * 142.94700 * 18 17 12 21 21 N 1.31619 * 119.99896 * 164.99313 * 20 18 17 22 22 Si 1.86792 * 119.99924 * 344.99753 * 20 18 17 23 23 H 1.48499 * 109.47684 * 92.99786 * 22 20 18 24 24 H 1.48501 * 109.47165 * 212.99899 * 22 20 18 25 25 H 1.48507 * 109.47191 * 332.99809 * 22 20 18 26 26 C 1.38256 * 120.12402 * 359.48480 * 6 5 4 27 27 C 1.38331 * 120.03285 * 0.23479 * 26 6 5 28 28 F 1.35102 * 120.04917 * 179.97438 * 27 26 6 29 29 H 1.09003 * 109.47103 * 299.99781 * 1 2 3 30 30 H 1.08997 * 109.47617 * 59.99723 * 1 2 3 31 31 H 1.09002 * 109.47458 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.01601 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.95683 * 180.29535 * 5 4 3 34 34 H 1.08999 * 109.46999 * 29.72223 * 7 6 5 35 35 H 1.08999 * 109.47755 * 149.72392 * 7 6 5 36 36 H 0.97006 * 119.99575 * 359.97438 * 10 8 7 37 37 H 1.08992 * 109.46904 * 293.74080 * 11 10 8 38 38 H 1.08998 * 109.46602 * 53.73803 * 11 10 8 39 39 H 1.09009 * 110.72016 * 259.98060 * 14 12 11 40 40 H 1.08997 * 110.72080 * 23.24679 * 14 12 11 41 41 H 1.08997 * 111.03695 * 206.52821 * 15 14 12 42 42 H 1.09003 * 110.92030 * 82.74419 * 15 14 12 43 43 H 1.09002 * 110.37021 * 278.08696 * 16 15 14 44 44 H 1.09000 * 110.46160 * 155.80505 * 16 15 14 45 45 H 0.96993 * 119.99650 * 179.97438 * 21 20 18 46 46 H 1.08007 * 119.98732 * 180.25354 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 -0.0005 5 6 1.9216 3.6053 0.0049 6 6 3.3023 3.6777 -0.0003 7 6 3.9849 5.0212 0.0003 8 6 4.2131 5.4694 -1.4204 9 8 3.8568 4.7668 -2.3426 10 7 4.8139 6.6505 -1.6662 11 6 5.0361 7.0859 -3.0472 12 6 5.5857 8.5137 -3.0496 13 1 6.5091 8.5563 -2.4720 14 6 5.8519 8.9713 -4.4992 15 6 5.4120 10.4616 -4.4770 16 6 4.2102 10.4189 -3.5006 17 7 4.5929 9.4327 -2.4738 18 6 4.1042 9.3806 -1.1957 19 1 3.9256 8.4255 -0.7243 20 6 3.8381 10.5555 -0.5059 21 7 3.1044 10.5256 0.5864 22 14 4.5213 12.1789 -1.1280 23 1 3.5185 12.8344 -2.0055 24 1 4.8230 13.0637 0.0258 25 1 5.7658 11.9293 -1.8990 26 6 4.0578 2.5199 -0.0002 27 6 3.4333 1.2856 0.0002 28 9 4.1713 0.1540 -0.0002 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 0.2137 2.3200 -0.0014 33 1 1.3342 4.5115 0.0093 34 1 3.3559 5.7481 0.5140 35 1 4.9427 4.9419 0.5144 36 1 5.0992 7.2123 -0.9286 37 1 5.7530 6.4198 -3.5272 38 1 4.0930 7.0587 -3.5929 39 1 6.9106 8.8827 -4.7433 40 1 5.2442 8.4007 -5.2014 41 1 5.0992 10.7920 -5.4675 42 1 6.2084 11.0967 -4.0889 43 1 3.3095 10.0940 -4.0215 44 1 4.0530 11.3974 -3.0468 45 1 2.9188 11.3465 1.0685 46 1 5.1363 2.5791 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663508404.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:14 Heat of formation + Delta-G solvation = -64.165799 kcal Electronic energy + Delta-G solvation = -28912.046234 eV Core-core repulsion = 24717.464190 eV Total energy + Delta-G solvation = -4194.582045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.75211 -40.21529 -39.31619 -38.08588 -37.33168 -33.96524 -32.72704 -32.17859 -30.75595 -30.03365 -29.59612 -28.18719 -26.60421 -24.85820 -23.66870 -22.82605 -21.75648 -20.91227 -19.91101 -19.45070 -18.39652 -17.36111 -17.00438 -16.77678 -16.29947 -16.24973 -16.03783 -15.36582 -15.09590 -14.93748 -14.86669 -14.52951 -14.30675 -14.00834 -13.71697 -13.23528 -13.18217 -12.95683 -12.56615 -12.41298 -12.35240 -12.28643 -12.00716 -11.65524 -11.58387 -11.37138 -11.32219 -11.18916 -11.13757 -10.93231 -10.73100 -10.51875 -10.23507 -9.90444 -9.60566 -9.39627 -8.93410 -8.67874 -8.37367 -8.13629 -6.89542 -6.10032 -3.57085 1.13191 1.19403 2.99958 3.12730 3.24622 3.38629 3.42747 3.43423 3.91484 4.18772 4.42693 4.59210 4.67344 4.85439 4.87837 4.92936 5.07678 5.08259 5.21985 5.23439 5.28219 5.33853 5.39724 5.42936 5.46707 5.51077 5.74397 5.80779 5.87931 5.91513 6.04149 6.07350 6.08940 6.12014 6.22554 6.29910 6.36368 6.50458 6.52493 6.57977 6.79993 6.82607 7.05694 7.16818 7.80438 8.11533 8.21623 8.68960 8.77258 9.54203 10.14447 11.03996 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.002592 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.816254 B =10800.643858 C =11554.176009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.088 3.912 4 C -0.179 4.179 5 C -0.072 4.072 6 C -0.061 4.061 7 C -0.104 4.104 8 C 0.511 3.489 9 O -0.554 6.554 10 N -0.708 5.708 11 C 0.117 3.883 12 C 0.143 3.857 13 H 0.048 0.952 14 C -0.121 4.121 15 C -0.136 4.136 16 C 0.117 3.883 17 N -0.602 5.602 18 C -0.257 4.257 19 H 0.091 0.909 20 C 0.035 3.965 21 N -0.903 5.903 22 Si 0.894 3.106 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.268 1.268 26 C -0.103 4.103 27 C 0.067 3.933 28 F -0.136 7.136 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.413 0.587 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.031 0.969 44 H 0.041 0.959 45 H 0.265 0.735 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.191 -13.066 -1.717 13.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.042 3.958 4 C -0.198 4.198 5 C -0.090 4.090 6 C -0.062 4.062 7 C -0.143 4.143 8 C 0.297 3.703 9 O -0.433 6.433 10 N -0.361 5.361 11 C -0.009 4.009 12 C 0.036 3.964 13 H 0.066 0.934 14 C -0.160 4.160 15 C -0.174 4.174 16 C -0.007 4.007 17 N -0.328 5.328 18 C -0.385 4.385 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.545 5.545 22 Si 0.725 3.275 23 H -0.216 1.216 24 H -0.233 1.233 25 H -0.193 1.193 26 C -0.121 4.121 27 C 0.048 3.952 28 F -0.115 7.115 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.252 0.748 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.048 0.952 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.432 -13.693 -2.130 13.865 hybrid contribution 0.163 1.325 0.060 1.336 sum -0.270 -12.368 -2.070 12.543 Atomic orbital electron populations 1.23090 0.78123 1.04014 1.01595 1.86105 1.21583 1.26013 1.88995 1.18950 0.90768 0.85500 1.00541 1.21070 1.00151 0.91360 1.07192 1.20943 0.93948 0.97506 0.96620 1.19084 0.93249 0.93546 1.00310 1.20667 1.02955 0.94811 0.95917 1.20356 0.77807 0.81429 0.90697 1.90669 1.51533 1.54815 1.46242 1.46229 1.59935 1.19950 1.10017 1.21888 1.00376 0.95851 0.82748 1.21279 0.92674 0.89273 0.93157 0.93429 1.22532 1.00688 0.96396 0.96379 1.22818 0.99129 0.96321 0.99166 1.21899 0.94804 0.93877 0.90166 1.44672 1.45391 1.33485 1.09260 1.18656 1.38561 0.94010 0.87235 0.89146 1.25461 0.97664 0.98347 0.95158 1.69767 1.37735 1.28176 1.18801 0.86657 0.80200 0.83942 0.76664 1.21580 1.23276 1.19343 1.20819 1.00827 0.89727 1.00774 1.16845 0.85871 0.82806 1.09725 1.91476 1.76474 1.49096 1.94439 0.92456 0.92404 0.88158 0.84551 0.84762 0.86972 0.87959 0.74776 0.93042 0.91834 0.91384 0.91288 0.91566 0.91595 0.95153 0.94146 0.92528 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.94 10.36 -19.59 -0.20 -4.15 16 3 C 0.09 1.19 6.69 -39.18 -0.26 0.93 16 4 C -0.18 -2.18 9.04 -39.45 -0.36 -2.53 16 5 C -0.07 -0.95 9.69 -39.59 -0.38 -1.34 16 6 C -0.06 -0.85 4.37 -104.61 -0.46 -1.30 16 7 C -0.10 -1.41 5.83 -29.03 -0.17 -1.58 16 8 C 0.51 8.83 7.82 -10.98 -0.09 8.74 16 9 O -0.55 -11.30 16.02 5.55 0.09 -11.21 16 10 N -0.71 -12.35 4.35 -60.30 -0.26 -12.61 16 11 C 0.12 2.05 5.17 -4.04 -0.02 2.03 16 12 C 0.14 2.55 3.31 -66.95 -0.22 2.33 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 14 C -0.12 -1.80 6.50 -24.76 -0.16 -1.96 16 15 C -0.14 -2.20 7.09 -24.45 -0.17 -2.37 16 16 C 0.12 2.38 6.18 -2.53 -0.02 2.37 16 17 N -0.60 -13.12 2.67 -162.57 -0.43 -13.56 16 18 C -0.26 -6.44 9.47 -15.06 -0.14 -6.58 16 19 H 0.09 2.29 5.50 -52.49 -0.29 2.00 16 20 C 0.03 0.93 5.47 -17.43 -0.10 0.84 16 21 N -0.90 -25.64 13.97 55.49 0.78 -24.86 16 22 Si 0.89 21.41 24.77 -169.99 -4.21 17.20 16 23 H -0.29 -6.87 6.83 56.52 0.39 -6.49 16 24 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.27 -6.22 6.94 56.52 0.39 -5.83 16 26 C -0.10 -1.40 9.67 -39.54 -0.38 -1.78 16 27 C 0.07 0.97 7.31 -39.30 -0.29 0.68 16 28 F -0.14 -2.04 17.11 2.25 0.04 -2.00 16 29 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.14 1.28 6.30 -52.49 -0.33 0.95 16 33 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.11 1.49 8.08 -51.93 -0.42 1.07 16 35 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 36 H 0.41 7.27 6.23 -40.82 -0.25 7.02 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 39 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 40 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.04 0.90 3.13 -51.93 -0.16 0.74 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -32.06 373.53 -7.26 -39.33 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.46 Total: 6.56 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -2.22 Total: -0.33 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.08 Total: -51.03 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.11 Total: -15.36 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.21 Total: 17.20 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.06 -7.26 -39.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663508404.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.837 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds