Wall clock time and date at job start Sat Apr 11 2020 04:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35957 * 117.00043 * 2 1 4 4 C 1.38660 * 120.05819 * 359.97438 * 3 2 1 5 5 C 1.38188 * 119.96669 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.09415 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.93580 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47030 * 89.99626 * 7 6 5 9 9 O 1.21277 * 119.99790 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99997 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00098 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47195 * 185.60322 * 11 10 8 13 13 H 1.08999 * 109.87659 * 296.42328 * 12 11 10 14 14 C 1.54319 * 109.88206 * 175.24238 * 12 11 10 15 15 C 1.55149 * 102.94502 * 218.39337 * 14 12 11 16 16 C 1.54910 * 101.58198 * 35.50424 * 15 14 12 17 17 N 1.47020 * 109.87711 * 57.44030 * 12 11 10 18 18 C 1.36938 * 125.65058 * 298.32952 * 17 12 11 19 19 H 1.08006 * 120.00046 * 330.50697 * 18 17 12 20 20 C 1.38809 * 120.00280 * 150.50254 * 18 17 12 21 21 N 1.31612 * 120.00280 * 163.65830 * 20 18 17 22 22 Si 1.86804 * 119.99906 * 343.65754 * 20 18 17 23 23 H 1.48496 * 109.47078 * 84.88626 * 22 20 18 24 24 H 1.48495 * 109.47100 * 204.89043 * 22 20 18 25 25 H 1.48498 * 109.46969 * 324.89058 * 22 20 18 26 26 C 1.38258 * 120.12852 * 0.24740 * 6 5 4 27 27 C 1.38334 * 120.02654 * 359.49997 * 26 6 5 28 28 F 1.35100 * 120.04957 * 180.22900 * 27 26 6 29 29 H 1.09010 * 109.46729 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47428 * 299.99824 * 1 2 3 31 31 H 1.08994 * 109.47226 * 60.00347 * 1 2 3 32 32 H 1.07996 * 120.01608 * 0.05092 * 4 3 2 33 33 H 1.08001 * 119.95151 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.46964 * 330.00132 * 7 6 5 35 35 H 1.08997 * 109.47363 * 209.99657 * 7 6 5 36 36 H 0.96999 * 119.99709 * 0.02562 * 10 8 7 37 37 H 1.09002 * 109.46763 * 65.60500 * 11 10 8 38 38 H 1.09001 * 109.47203 * 305.60705 * 11 10 8 39 39 H 1.08999 * 110.72114 * 336.76068 * 14 12 11 40 40 H 1.09004 * 110.71808 * 99.85452 * 14 12 11 41 41 H 1.09005 * 111.00461 * 277.42689 * 15 14 12 42 42 H 1.08998 * 111.01002 * 153.58106 * 15 14 12 43 43 H 1.09003 * 110.36558 * 204.15354 * 16 15 14 44 44 H 1.08996 * 110.36865 * 81.82878 * 16 15 14 45 45 H 0.97009 * 120.00497 * 179.97438 * 21 20 18 46 46 H 1.07995 * 119.98455 * 179.74475 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9215 3.6053 -0.0011 6 6 3.3022 3.6777 -0.0016 7 6 3.9848 5.0213 -0.0028 8 6 4.2128 5.4702 1.4177 9 8 3.8565 4.7680 2.3401 10 7 4.8135 6.6514 1.6630 11 6 5.0356 7.0875 3.0438 12 6 5.6006 8.5094 3.0450 13 1 6.5763 8.5208 2.5592 14 6 5.7264 9.0230 4.4948 15 6 5.3136 10.5135 4.3725 16 6 4.2120 10.4430 3.2856 17 7 4.6804 9.4135 2.3399 18 6 4.3186 9.3160 1.0228 19 1 5.0033 8.8892 0.3048 20 6 3.0718 9.7656 0.6104 21 7 2.8374 9.9752 -0.6677 22 14 1.7264 10.0733 1.8693 23 1 1.8777 11.4393 2.4317 24 1 0.3990 9.9516 1.2150 25 1 1.8332 9.0735 2.9621 26 6 4.0579 2.5199 -0.0068 27 6 3.4333 1.2856 -0.0010 28 9 4.1712 0.1540 -0.0013 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 0.2136 2.3199 -0.0001 33 1 1.3340 4.5115 -0.0019 34 1 3.3558 5.7480 -0.5169 35 1 4.9427 4.9418 -0.5168 36 1 5.0988 7.2128 0.9252 37 1 5.7437 6.4148 3.5278 38 1 4.0904 7.0717 3.5863 39 1 5.0442 8.4867 5.1544 40 1 6.7535 8.9322 4.8483 41 1 6.1522 11.1252 4.0398 42 1 4.9100 10.8858 5.3141 43 1 4.1142 11.4046 2.7817 44 1 3.2609 10.1471 3.7280 45 1 1.9659 10.2891 -0.9560 46 1 5.1362 2.5792 -0.0113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663508405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:20 Heat of formation + Delta-G solvation = -69.115096 kcal Electronic energy + Delta-G solvation = -29224.780496 eV Core-core repulsion = 25029.983834 eV Total energy + Delta-G solvation = -4194.796662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.72656 -40.17508 -39.24610 -38.09677 -37.29208 -33.84439 -32.76310 -32.12437 -30.72393 -30.07391 -29.55659 -28.15644 -26.56665 -24.86339 -23.68746 -22.79410 -21.74950 -21.04539 -19.80199 -19.36393 -18.36311 -17.25198 -16.96644 -16.76250 -16.36418 -16.13291 -15.69662 -15.28995 -15.14811 -15.06146 -14.85409 -14.63819 -14.27237 -13.94878 -13.48779 -13.26601 -13.17452 -13.00553 -12.66279 -12.60908 -12.31670 -12.25484 -11.75334 -11.62099 -11.57709 -11.28547 -11.19065 -11.14916 -11.10095 -10.98172 -10.68381 -10.57037 -10.15385 -10.03402 -9.58308 -9.31830 -8.90097 -8.80619 -8.28602 -8.10130 -7.07181 -6.11642 -3.50954 1.16344 1.23033 3.02312 3.21535 3.26849 3.39875 3.44828 3.47904 3.99618 4.21868 4.42414 4.62654 4.71222 4.87507 4.89055 4.94561 5.10321 5.11306 5.23667 5.24945 5.25985 5.33639 5.41675 5.46713 5.51574 5.57595 5.79659 5.81686 5.89705 5.93173 6.06638 6.08587 6.11556 6.15394 6.21663 6.29615 6.36460 6.55203 6.59244 6.61216 6.72306 6.81444 7.16347 7.19555 7.65601 8.12341 8.26524 8.63929 8.88161 9.52143 10.08018 11.03157 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.002982 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.451875 B = 9386.522048 C =10228.473335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.087 3.913 4 C -0.179 4.179 5 C -0.073 4.073 6 C -0.059 4.059 7 C -0.103 4.103 8 C 0.511 3.489 9 O -0.559 6.559 10 N -0.700 5.700 11 C 0.116 3.884 12 C 0.144 3.856 13 H 0.049 0.951 14 C -0.124 4.124 15 C -0.131 4.131 16 C 0.111 3.889 17 N -0.602 5.602 18 C -0.246 4.246 19 H 0.087 0.913 20 C 0.035 3.965 21 N -0.905 5.905 22 Si 0.888 3.112 23 H -0.285 1.285 24 H -0.303 1.303 25 H -0.273 1.273 26 C -0.103 4.103 27 C 0.068 3.932 28 F -0.136 7.136 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.413 0.587 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.024 0.976 45 H 0.265 0.735 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.147 -11.537 1.998 11.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.042 3.958 4 C -0.198 4.198 5 C -0.091 4.091 6 C -0.060 4.060 7 C -0.143 4.143 8 C 0.296 3.704 9 O -0.438 6.438 10 N -0.354 5.354 11 C -0.010 4.010 12 C 0.037 3.963 13 H 0.067 0.933 14 C -0.162 4.162 15 C -0.169 4.169 16 C -0.014 4.014 17 N -0.328 5.328 18 C -0.373 4.373 19 H 0.104 0.896 20 C -0.165 4.165 21 N -0.547 5.547 22 Si 0.718 3.282 23 H -0.212 1.212 24 H -0.231 1.231 25 H -0.199 1.199 26 C -0.122 4.122 27 C 0.048 3.952 28 F -0.115 7.115 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.254 0.746 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.125 -12.196 2.407 12.432 hybrid contribution -1.041 0.486 0.331 1.196 sum -1.166 -11.710 2.739 12.082 Atomic orbital electron populations 1.23085 0.78171 1.03978 1.01574 1.86102 1.21542 1.26025 1.89034 1.18941 0.90769 0.85466 1.00671 1.21063 1.00111 0.91369 1.07232 1.20942 0.94009 0.97466 0.96670 1.19114 0.93229 0.93639 1.00030 1.20656 1.02917 0.94674 0.96063 1.20340 0.77850 0.81555 0.90608 1.90655 1.51821 1.55119 1.46230 1.46153 1.59618 1.19725 1.09896 1.21860 1.00158 0.95826 0.83170 1.21346 0.94283 0.88634 0.92029 0.93314 1.22522 1.01019 0.96482 0.96209 1.22712 0.99453 0.96058 0.98712 1.21964 0.94922 0.93528 0.90944 1.44807 1.53683 1.26786 1.07537 1.18343 0.97848 1.40401 0.80703 0.89592 1.25201 0.96977 0.98927 0.95438 1.69771 1.23425 1.47424 1.14056 0.86852 0.81568 0.78339 0.81422 1.21219 1.23120 1.19908 1.20819 1.00821 0.89700 1.00818 1.16841 0.85852 0.82795 1.09728 1.91473 1.76482 1.49103 1.94446 0.88175 0.92449 0.92469 0.84606 0.84867 0.86923 0.88026 0.74619 0.93149 0.92254 0.91447 0.91341 0.91261 0.91779 0.92556 0.95874 0.92523 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.08 10.36 -19.61 -0.20 -4.28 16 3 C 0.09 1.23 6.69 -39.18 -0.26 0.97 16 4 C -0.18 -2.30 9.04 -39.44 -0.36 -2.65 16 5 C -0.07 -1.02 9.69 -39.59 -0.38 -1.41 16 6 C -0.06 -0.87 4.37 -104.60 -0.46 -1.33 16 7 C -0.10 -1.52 5.83 -29.03 -0.17 -1.68 16 8 C 0.51 9.35 7.82 -10.98 -0.09 9.26 16 9 O -0.56 -11.92 16.02 5.56 0.09 -11.83 16 10 N -0.70 -12.87 4.83 -60.29 -0.29 -13.16 16 11 C 0.12 2.11 5.25 -4.04 -0.02 2.08 16 12 C 0.14 2.55 3.41 -66.96 -0.23 2.32 16 13 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 14 C -0.12 -1.82 6.48 -24.90 -0.16 -1.99 16 15 C -0.13 -2.02 7.08 -24.59 -0.17 -2.20 16 16 C 0.11 2.25 4.80 -2.53 -0.01 2.23 16 17 N -0.60 -12.95 2.80 -162.58 -0.46 -13.41 16 18 C -0.25 -6.02 8.43 -15.06 -0.13 -6.15 16 19 H 0.09 2.17 6.80 -52.48 -0.36 1.81 16 20 C 0.04 0.93 5.47 -17.43 -0.10 0.83 16 21 N -0.90 -25.29 13.97 55.49 0.78 -24.52 16 22 Si 0.89 21.73 24.39 -169.99 -4.15 17.59 16 23 H -0.29 -6.83 6.88 56.52 0.39 -6.44 16 24 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 25 H -0.27 -6.81 6.67 56.52 0.38 -6.43 16 26 C -0.10 -1.46 9.67 -39.54 -0.38 -1.84 16 27 C 0.07 1.01 7.31 -39.30 -0.29 0.72 16 28 F -0.14 -2.10 17.11 2.25 0.04 -2.06 16 29 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 31 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 32 H 0.14 1.36 6.30 -52.49 -0.33 1.03 16 33 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.11 1.66 8.08 -51.93 -0.42 1.24 16 35 H 0.10 1.22 8.08 -51.93 -0.42 0.80 16 36 H 0.41 7.64 5.61 -40.82 -0.23 7.41 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.22 8.07 -51.93 -0.42 0.80 16 39 H 0.07 0.97 7.81 -51.93 -0.41 0.57 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.06 1.20 7.51 -51.93 -0.39 0.81 16 44 H 0.02 0.51 5.24 -51.93 -0.27 0.23 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.14 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -31.66 373.41 -7.37 -39.03 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.59 Total: 6.63 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -2.21 Total: 0.39 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.03 Total: -51.08 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.11 Total: -16.11 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.15 Total: 17.59 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.66 -7.37 -39.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663508405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.084 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds