Wall clock time and date at job start Sat Apr 11 2020 04:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00096 * 2 1 4 4 H 1.08994 * 109.46732 * 30.00540 * 3 2 1 5 5 C 1.50695 * 109.47007 * 270.00507 * 3 2 1 6 6 O 1.21274 * 120.00413 * 355.26985 * 5 3 2 7 7 N 1.34784 * 119.99635 * 174.99942 * 5 3 2 8 8 C 1.46499 * 119.99971 * 179.97438 * 7 5 3 9 9 C 1.52992 * 109.47267 * 180.02562 * 8 7 5 10 10 H 1.09000 * 110.64132 * 54.29869 * 9 8 7 11 11 C 1.55158 * 110.72411 * 177.44203 * 9 8 7 12 12 C 1.55115 * 101.49037 * 153.73079 * 11 9 8 13 13 N 1.47426 * 104.94182 * 323.22668 * 12 11 9 14 14 C 1.36940 * 125.64438 * 203.96324 * 13 12 11 15 15 H 1.08006 * 119.99511 * 180.02562 * 14 13 12 16 16 C 1.38807 * 120.00120 * 0.04460 * 14 13 12 17 17 N 1.31616 * 120.00276 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99963 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46937 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47085 * 119.99501 * 18 16 14 21 21 H 1.48495 * 109.47493 * 239.99513 * 18 16 14 22 22 C 1.47020 * 108.70535 * 23.99775 * 13 12 11 23 23 C 1.50702 * 109.47040 * 150.00377 * 3 2 1 24 24 C 1.38247 * 119.97308 * 39.72801 * 23 3 2 25 25 C 1.38197 * 120.01922 * 179.72420 * 24 23 3 26 26 C 1.38465 * 119.97878 * 0.52855 * 25 24 23 27 27 F 1.35101 * 120.02510 * 179.72644 * 26 25 24 28 28 C 1.38456 * 119.94677 * 359.74621 * 26 25 24 29 29 C 1.38206 * 119.97095 * 0.02562 * 28 26 25 30 30 H 1.08997 * 109.47421 * 59.99415 * 1 2 3 31 31 H 1.09000 * 109.46777 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46456 * 299.99460 * 1 2 3 33 33 H 0.96999 * 120.00044 * 0.02562 * 7 5 3 34 34 H 1.09004 * 109.47024 * 300.00310 * 8 7 5 35 35 H 1.09005 * 109.47136 * 59.99926 * 8 7 5 36 36 H 1.09003 * 111.00414 * 271.94534 * 11 9 8 37 37 H 1.09008 * 111.00127 * 35.78431 * 11 9 8 38 38 H 1.08996 * 110.42612 * 204.29395 * 12 11 9 39 39 H 1.09008 * 110.29937 * 82.08940 * 12 11 9 40 40 H 0.96996 * 120.00252 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.88152 * 239.52670 * 22 13 12 42 42 H 1.09005 * 110.00971 * 118.43400 * 22 13 12 43 43 H 1.07995 * 119.99000 * 359.97438 * 24 23 3 44 44 H 1.08004 * 120.01232 * 180.29624 * 25 24 23 45 45 H 1.07998 * 120.01343 * 179.97438 * 28 26 25 46 46 H 1.08005 * 119.98120 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2144 1.7644 -1.4208 6 8 1.9743 1.0124 -2.3414 7 7 2.6588 3.0125 -1.6685 8 6 2.8578 3.4586 -3.0497 9 6 3.3637 4.9025 -3.0514 10 1 4.2559 4.9978 -2.4327 11 6 3.6458 5.3836 -4.4993 12 6 3.4568 6.9167 -4.3578 13 7 2.3434 7.0761 -3.4047 14 6 1.5231 8.1686 -3.3112 15 1 0.7325 8.1889 -2.5757 16 6 1.7077 9.2499 -4.1619 17 7 2.6713 9.2253 -5.0580 18 14 0.5883 10.7399 -4.0348 19 1 -0.4080 10.5200 -2.9558 20 1 1.3999 11.9436 -3.7219 21 1 -0.1173 10.9407 -5.3259 22 6 2.2601 5.8682 -2.5707 23 6 3.3387 1.2638 0.7103 24 6 4.1868 0.1877 0.5265 25 6 5.4077 0.1512 1.1729 26 6 5.7767 1.1878 2.0136 27 9 6.9677 1.1504 2.6503 28 6 4.9240 2.2623 2.2013 29 6 3.7055 2.2988 1.5501 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 2.8474 3.6152 -0.9322 34 1 3.5916 2.8163 -3.5367 35 1 1.9122 3.4038 -3.5890 36 1 4.6642 5.1387 -4.8009 37 1 2.9217 4.9647 -5.1982 38 1 3.1986 7.3586 -5.3201 39 1 4.3634 7.3745 -3.9619 40 1 2.8004 9.9809 -5.6522 41 1 1.2820 5.4022 -2.6899 42 1 2.4228 6.1256 -1.5241 43 1 3.8969 -0.6228 -0.1257 44 1 6.0722 -0.6873 1.0255 45 1 5.2106 3.0712 2.8571 46 1 3.0401 3.1368 1.6968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663644520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:23 Heat of formation + Delta-G solvation = -73.998983 kcal Electronic energy + Delta-G solvation = -28840.327429 eV Core-core repulsion = 24645.318986 eV Total energy + Delta-G solvation = -4195.008443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.19763 -40.59342 -38.99421 -37.94644 -37.23110 -34.69365 -32.78160 -32.04297 -31.50615 -29.86470 -28.46400 -27.59832 -26.33957 -25.26940 -23.50942 -23.39502 -22.23621 -20.77286 -20.00516 -19.68500 -18.07295 -17.68736 -17.31389 -16.90895 -16.83453 -16.12535 -15.87997 -15.62007 -15.31752 -14.95104 -14.74121 -14.62972 -14.29889 -13.95454 -13.81204 -13.65219 -13.57224 -13.18506 -12.81501 -12.59055 -12.54601 -11.99390 -11.81174 -11.72505 -11.67105 -11.52834 -11.30853 -10.98544 -10.86884 -10.82874 -10.44295 -10.13976 -10.03430 -9.88090 -9.67051 -9.51556 -9.46227 -9.03309 -8.87703 -8.68708 -6.87145 -5.68993 -3.10916 0.67434 0.88008 2.47276 2.91792 3.10395 3.36918 3.42231 3.44885 3.64353 3.90641 4.25818 4.37091 4.44939 4.52210 4.64083 4.65822 4.90154 5.04469 5.07407 5.10277 5.20360 5.22449 5.36669 5.46348 5.49099 5.50622 5.59022 5.66117 5.75414 5.84664 5.86378 6.02823 6.03414 6.06838 6.30335 6.37362 6.48736 6.50109 6.55661 6.64067 6.69888 6.86285 7.45342 7.48241 7.59270 7.82480 8.13841 8.33041 9.18482 9.79510 10.44144 11.34980 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.012948 B = 0.002598 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.026269 B =10775.508806 C =11634.274788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.117 3.883 4 H 0.097 0.903 5 C 0.493 3.507 6 O -0.525 6.525 7 N -0.719 5.719 8 C 0.133 3.867 9 C -0.115 4.115 10 H 0.076 0.924 11 C -0.135 4.135 12 C 0.152 3.848 13 N -0.604 5.604 14 C -0.223 4.223 15 H 0.077 0.923 16 C -0.011 4.011 17 N -0.921 5.921 18 Si 0.914 3.086 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.142 3.858 23 C -0.101 4.101 24 C -0.054 4.054 25 C -0.155 4.155 26 C 0.105 3.895 27 F -0.139 7.139 28 C -0.152 4.152 29 C -0.077 4.077 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.400 0.600 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.012 0.988 40 H 0.252 0.748 41 H 0.023 0.977 42 H 0.017 0.983 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.286 -18.128 14.087 23.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.055 3.945 4 H 0.115 0.885 5 C 0.277 3.723 6 O -0.401 6.401 7 N -0.372 5.372 8 C 0.009 3.991 9 C -0.134 4.134 10 H 0.094 0.906 11 C -0.175 4.175 12 C 0.027 3.973 13 N -0.330 5.330 14 C -0.352 4.352 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.570 5.570 18 Si 0.745 3.255 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.016 3.984 23 C -0.102 4.102 24 C -0.072 4.072 25 C -0.174 4.174 26 C 0.086 3.914 27 F -0.118 7.118 28 C -0.170 4.170 29 C -0.095 4.095 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.234 0.766 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.035 0.965 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.158 0.842 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.210 -18.650 13.339 23.036 hybrid contribution -0.370 1.345 0.585 1.513 sum 1.840 -17.306 13.924 22.288 Atomic orbital electron populations 1.22908 0.80012 1.03474 1.00377 1.87969 1.20491 1.24141 1.94484 1.20722 0.93567 0.87659 0.92547 0.88511 1.21018 0.77743 0.82131 0.91402 1.90717 1.49902 1.53841 1.45608 1.46079 1.67167 1.13971 1.09934 1.21484 1.01280 0.94705 0.81598 1.22447 0.99061 0.92294 0.99588 0.90572 1.23041 1.00117 1.00510 0.93793 1.21966 0.89400 0.88395 0.97523 1.44504 1.35517 1.14939 1.38071 1.19112 1.08483 0.92713 1.14860 0.90494 1.24793 0.98808 0.98542 0.98531 1.69801 1.33008 1.30768 1.23413 0.86003 0.79637 0.82577 0.77296 1.20546 1.21734 1.21712 1.21316 0.95072 0.88047 0.93964 1.19441 0.95048 0.96396 0.99290 1.20913 0.91673 0.97591 0.97072 1.21193 0.98337 0.99145 0.98713 1.17805 0.82178 0.96387 0.95055 1.91514 1.43634 1.96571 1.80033 1.21104 0.94599 0.98540 1.02795 1.20869 0.96073 0.97957 0.94637 0.93280 0.88971 0.93710 0.76564 0.91591 0.91145 0.92068 0.91839 0.87527 0.97008 0.93741 0.95886 0.96487 0.84200 0.84431 0.84171 0.84401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.81 101.05 1.09 1.34 16 2 O -0.35 -3.92 9.20 -55.10 -0.51 -4.43 16 3 C 0.12 1.17 2.72 -29.04 -0.08 1.10 16 4 H 0.10 0.73 7.65 -51.93 -0.40 0.33 16 5 C 0.49 6.46 7.11 -10.98 -0.08 6.38 16 6 O -0.52 -8.91 16.51 -14.30 -0.24 -9.15 16 7 N -0.72 -8.82 5.38 -60.30 -0.32 -9.15 16 8 C 0.13 1.90 5.00 -4.05 -0.02 1.88 16 9 C -0.11 -1.85 2.98 -88.79 -0.26 -2.11 16 10 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 11 C -0.14 -2.46 6.55 -24.47 -0.16 -2.62 16 12 C 0.15 3.61 5.89 -2.42 -0.01 3.59 16 13 N -0.60 -15.11 3.40 -169.94 -0.58 -15.69 16 14 C -0.22 -6.13 10.27 -15.06 -0.15 -6.28 16 15 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 16 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 17 N -0.92 -26.55 10.09 55.49 0.56 -25.99 16 18 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.14 2.78 6.64 -3.06 -0.02 2.76 16 23 C -0.10 -0.94 4.92 -104.62 -0.52 -1.46 16 24 C -0.05 -0.53 9.35 -39.59 -0.37 -0.90 16 25 C -0.16 -1.39 10.03 -39.51 -0.40 -1.79 16 26 C 0.10 0.99 7.30 -39.42 -0.29 0.70 16 27 F -0.14 -1.43 17.27 2.25 0.04 -1.39 16 28 C -0.15 -1.24 10.03 -39.51 -0.40 -1.64 16 29 C -0.08 -0.60 9.67 -39.59 -0.38 -0.98 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 33 H 0.40 4.09 8.40 -40.82 -0.34 3.75 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.12 8.01 -51.93 -0.42 0.70 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.15 8.05 -51.92 -0.42 0.74 16 38 H 0.11 2.87 5.87 -51.93 -0.31 2.56 16 39 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.02 0.46 7.73 -51.93 -0.40 0.06 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.14 1.39 7.77 -52.49 -0.41 0.98 16 44 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 45 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 46 H 0.14 0.73 8.04 -52.48 -0.42 0.31 16 LS Contribution 386.32 15.07 5.82 5.82 Total: -1.00 -33.02 386.32 -9.27 -42.29 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.88 Total: 1.37 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.14 Total: -0.44 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.34 Total: -50.83 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.74 Total: -13.58 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.02 -9.27 -42.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663644520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.708 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds