Wall clock time and date at job start Sat Apr 11 2020 04:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99944 * 2 1 4 4 H 1.09007 * 109.46998 * 29.99877 * 3 2 1 5 5 C 1.50700 * 109.47138 * 149.99712 * 3 2 1 6 6 O 1.21283 * 119.99803 * 5.00047 * 5 3 2 7 7 N 1.34777 * 119.99675 * 185.27922 * 5 3 2 8 8 C 1.46497 * 119.99525 * 179.72583 * 7 5 3 9 9 C 1.52999 * 109.46992 * 179.97438 * 8 7 5 10 10 H 1.09004 * 110.64142 * 54.29615 * 9 8 7 11 11 C 1.55154 * 110.72293 * 177.44240 * 9 8 7 12 12 C 1.55125 * 101.49097 * 153.73475 * 11 9 8 13 13 N 1.47427 * 104.93757 * 323.22319 * 12 11 9 14 14 C 1.36933 * 125.64544 * 203.96699 * 13 12 11 15 15 H 1.08000 * 120.00233 * 180.02562 * 14 13 12 16 16 C 1.38819 * 120.00270 * 0.04099 * 14 13 12 17 17 N 1.31622 * 119.99585 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00145 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47477 * 89.99930 * 18 16 14 20 20 H 1.48502 * 109.47057 * 210.00171 * 18 16 14 21 21 H 1.48506 * 109.47340 * 329.99620 * 18 16 14 22 22 C 1.47018 * 108.70634 * 24.00182 * 13 12 11 23 23 C 1.50693 * 109.46968 * 270.00151 * 3 2 1 24 24 C 1.38249 * 119.97610 * 324.71885 * 23 3 2 25 25 C 1.38196 * 120.02459 * 179.77135 * 24 23 3 26 26 C 1.38463 * 119.97452 * 0.51089 * 25 24 23 27 27 F 1.35100 * 120.02333 * 179.76827 * 26 25 24 28 28 C 1.38447 * 119.94889 * 359.74404 * 26 25 24 29 29 C 1.38197 * 119.97661 * 0.02562 * 28 26 25 30 30 H 1.09000 * 109.47617 * 300.00145 * 1 2 3 31 31 H 1.09001 * 109.46913 * 60.00456 * 1 2 3 32 32 H 1.09004 * 109.47180 * 179.97438 * 1 2 3 33 33 H 0.97000 * 119.99894 * 359.71837 * 7 5 3 34 34 H 1.08995 * 109.47421 * 299.99467 * 8 7 5 35 35 H 1.09001 * 109.47621 * 60.00103 * 8 7 5 36 36 H 1.09006 * 111.00143 * 271.93889 * 11 9 8 37 37 H 1.09003 * 111.00830 * 35.78694 * 11 9 8 38 38 H 1.08999 * 110.41882 * 204.29446 * 12 11 9 39 39 H 1.09002 * 110.30131 * 82.08731 * 12 11 9 40 40 H 0.96996 * 119.99420 * 179.97438 * 17 16 14 41 41 H 1.09005 * 109.88303 * 239.52297 * 22 13 12 42 42 H 1.08996 * 110.01100 * 118.43109 * 22 13 12 43 43 H 1.07998 * 119.98281 * 0.02699 * 24 23 3 44 44 H 1.08003 * 120.01402 * 180.25571 * 25 24 23 45 45 H 1.08005 * 120.01636 * 179.97438 * 28 26 25 46 46 H 1.08000 * 119.98909 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3386 1.2640 0.7105 6 8 3.7896 0.2045 1.0915 7 7 4.0226 2.4048 0.9274 8 6 5.3111 2.3651 1.6234 9 6 5.8730 3.7836 1.7376 10 1 5.1473 4.4477 2.2072 11 6 7.2084 3.7832 2.5275 12 6 7.9052 5.0463 1.9571 13 7 7.5387 5.0704 0.5293 14 6 8.2466 5.6896 -0.4659 15 1 7.8927 5.6497 -1.4855 16 6 9.4194 6.3684 -0.1645 17 7 9.8506 6.4173 1.0781 18 14 10.3846 7.2137 -1.5220 19 1 9.9070 8.6117 -1.6723 20 1 11.8282 7.2185 -1.1737 21 1 10.1862 6.4828 -2.7995 22 6 6.2869 4.3202 0.3511 23 6 2.2145 1.7644 -1.4208 24 6 2.5651 0.8514 -2.3979 25 6 2.7480 1.2703 -3.7020 26 6 2.5904 2.6067 -4.0279 27 9 2.7736 3.0181 -5.3016 28 6 2.2444 3.5210 -3.0475 29 6 2.0573 3.0991 -1.7449 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.6619 3.2520 0.6226 34 1 5.1727 1.9474 2.6206 35 1 6.0082 1.7427 1.0623 36 1 7.0290 3.8824 3.5981 37 1 7.7897 2.8867 2.3118 38 1 8.9865 4.9677 2.0700 39 1 7.5361 5.9409 2.4586 40 1 10.6702 6.8913 1.2887 41 1 6.4474 3.4889 -0.3354 42 1 5.5102 4.9780 -0.0388 43 1 2.6920 -0.1903 -2.1426 44 1 3.0179 0.5562 -4.4660 45 1 2.1215 4.5639 -3.3004 46 1 1.7870 3.8121 -0.9801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663644521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:27 Heat of formation + Delta-G solvation = -72.317093 kcal Electronic energy + Delta-G solvation = -29158.359476 eV Core-core repulsion = 24963.423964 eV Total energy + Delta-G solvation = -4194.935511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.09856 -40.55792 -38.95361 -37.88837 -37.31907 -34.68396 -32.72673 -31.92569 -31.41351 -29.83648 -28.50069 -27.76806 -26.20577 -25.25172 -23.50308 -23.33079 -22.15885 -20.76161 -19.98866 -19.65462 -18.00943 -17.61599 -17.27140 -16.95725 -16.80962 -16.02800 -15.78148 -15.66204 -15.28027 -14.94156 -14.75468 -14.58901 -14.28546 -13.98268 -13.78228 -13.65689 -13.46992 -13.07498 -12.83492 -12.52548 -12.50333 -12.09432 -11.83217 -11.75806 -11.68513 -11.51081 -11.25903 -10.96441 -10.81672 -10.48888 -10.35890 -10.13941 -10.02824 -9.90689 -9.74759 -9.52510 -9.39164 -9.02621 -8.83182 -8.66036 -6.84730 -5.66688 -3.08251 0.75075 0.95527 2.51211 2.72677 3.22793 3.39269 3.44572 3.46499 3.81613 3.99640 4.23382 4.41857 4.47650 4.60146 4.63643 4.69149 4.95567 5.01982 5.04639 5.09980 5.13784 5.23340 5.35315 5.37981 5.51185 5.58010 5.65491 5.67724 5.83773 5.86055 5.93956 6.03698 6.07020 6.08536 6.32600 6.37859 6.52786 6.56674 6.57335 6.65160 6.72029 6.88618 7.46141 7.49597 7.61738 7.84470 8.16228 8.35308 9.21119 9.81997 10.46575 11.37322 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.003301 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.792771 B = 8480.991599 C =10612.669153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.118 3.882 4 H 0.096 0.904 5 C 0.517 3.483 6 O -0.519 6.519 7 N -0.719 5.719 8 C 0.134 3.866 9 C -0.115 4.115 10 H 0.076 0.924 11 C -0.135 4.135 12 C 0.152 3.848 13 N -0.604 5.604 14 C -0.223 4.223 15 H 0.076 0.924 16 C -0.011 4.011 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.143 3.857 23 C -0.131 4.131 24 C -0.057 4.057 25 C -0.155 4.155 26 C 0.107 3.893 27 F -0.138 7.138 28 C -0.150 4.150 29 C -0.078 4.078 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.400 0.600 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.012 0.988 40 H 0.252 0.748 41 H 0.024 0.976 42 H 0.017 0.983 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.052 -9.151 -2.735 23.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.268 6.268 3 C 0.056 3.944 4 H 0.114 0.886 5 C 0.301 3.699 6 O -0.393 6.393 7 N -0.372 5.372 8 C 0.011 3.989 9 C -0.134 4.134 10 H 0.094 0.906 11 C -0.175 4.175 12 C 0.027 3.973 13 N -0.330 5.330 14 C -0.351 4.351 15 H 0.094 0.906 16 C -0.207 4.207 17 N -0.571 5.571 18 Si 0.744 3.256 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.207 1.207 22 C 0.017 3.983 23 C -0.132 4.132 24 C -0.075 4.075 25 C -0.173 4.173 26 C 0.088 3.912 27 F -0.117 7.117 28 C -0.169 4.169 29 C -0.097 4.097 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.234 0.766 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.042 0.958 42 H 0.035 0.965 43 H 0.158 0.842 44 H 0.155 0.845 45 H 0.158 0.842 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.397 -9.973 -2.535 22.845 hybrid contribution 0.093 1.320 -1.166 1.764 sum -20.303 -8.652 -3.701 22.378 Atomic orbital electron populations 1.22920 0.80391 1.03379 1.00249 1.88053 1.19858 1.24272 1.94640 1.20699 0.94387 0.87204 0.92143 0.88626 1.20043 0.85751 0.84437 0.79668 1.90731 1.68826 1.29632 1.50160 1.45958 1.22493 1.09060 1.59670 1.21496 0.83086 0.97701 0.96651 1.22452 0.98198 0.94078 0.98659 0.90580 1.23045 0.94700 1.01747 0.97968 1.21967 1.01816 0.90718 0.82771 1.44489 1.22778 1.61256 1.04468 1.19071 1.02537 1.25346 0.88151 0.90568 1.24785 0.98307 1.00916 0.96650 1.69794 1.23849 1.47149 1.16291 0.86079 0.79321 0.79369 0.80787 1.21637 1.21618 1.20683 1.21309 0.89510 0.94233 0.93293 1.20098 1.03701 0.94154 0.95206 1.20889 0.94903 1.00612 0.91082 1.21195 1.03668 0.94413 0.98052 1.17809 1.00910 0.93258 0.79249 1.91518 1.92696 1.91000 1.36463 1.21121 1.02914 1.00185 0.92669 1.20851 0.98095 0.94714 0.95992 0.93647 0.93657 0.88971 0.76591 0.91435 0.91096 0.92050 0.91806 0.87530 0.97033 0.93723 0.95846 0.96516 0.84198 0.84463 0.84222 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.81 101.05 1.09 1.28 16 2 O -0.35 -3.87 9.04 -55.09 -0.50 -4.37 16 3 C 0.12 1.18 2.72 -29.04 -0.08 1.10 16 4 H 0.10 0.67 7.70 -51.92 -0.40 0.27 16 5 C 0.52 6.96 7.16 -10.98 -0.08 6.88 16 6 O -0.52 -9.16 16.51 -14.31 -0.24 -9.39 16 7 N -0.72 -8.90 5.39 -60.30 -0.32 -9.23 16 8 C 0.13 1.93 5.00 -4.04 -0.02 1.91 16 9 C -0.11 -1.84 2.98 -88.78 -0.26 -2.11 16 10 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 11 C -0.14 -2.46 6.55 -24.47 -0.16 -2.62 16 12 C 0.15 3.62 5.89 -2.41 -0.01 3.61 16 13 N -0.60 -15.27 3.40 -169.93 -0.58 -15.85 16 14 C -0.22 -6.20 10.27 -15.06 -0.15 -6.35 16 15 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 16 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 17 N -0.92 -26.75 10.09 55.49 0.56 -26.19 16 18 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.14 2.85 6.64 -3.06 -0.02 2.83 16 23 C -0.13 -1.28 4.91 -104.62 -0.51 -1.80 16 24 C -0.06 -0.60 9.35 -39.59 -0.37 -0.97 16 25 C -0.15 -1.58 10.03 -39.51 -0.40 -1.98 16 26 C 0.11 1.17 7.30 -39.42 -0.29 0.88 16 27 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 28 C -0.15 -1.44 10.03 -39.52 -0.40 -1.84 16 29 C -0.08 -0.67 9.52 -39.59 -0.38 -1.05 16 30 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.40 4.09 8.24 -40.82 -0.34 3.75 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.16 8.00 -51.93 -0.42 0.74 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 38 H 0.11 2.88 5.87 -51.93 -0.31 2.58 16 39 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.14 1.48 7.63 -52.49 -0.40 1.07 16 44 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 45 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 46 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 385.84 15.07 5.81 5.81 Total: -1.00 -33.79 385.84 -9.25 -43.04 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.87 Total: 1.35 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.14 Total: -0.62 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.34 Total: -51.27 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.73 Total: -13.76 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.79 -9.25 -43.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663644521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.277 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds