Wall clock time and date at job start Sat Apr 11 2020 04:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99944 * 2 1 4 4 H 1.09007 * 109.46998 * 29.99877 * 3 2 1 5 5 C 1.50700 * 109.47138 * 149.99712 * 3 2 1 6 6 O 1.21283 * 119.99803 * 5.00047 * 5 3 2 7 7 N 1.34777 * 119.99675 * 185.27922 * 5 3 2 8 8 C 1.46497 * 119.99525 * 179.72583 * 7 5 3 9 9 C 1.52999 * 109.46992 * 179.97438 * 8 7 5 10 10 H 1.09004 * 110.64142 * 54.29615 * 9 8 7 11 11 C 1.55154 * 110.72293 * 177.44240 * 9 8 7 12 12 C 1.55125 * 101.49097 * 153.73475 * 11 9 8 13 13 N 1.47427 * 104.93757 * 323.22319 * 12 11 9 14 14 C 1.36933 * 125.64544 * 203.96699 * 13 12 11 15 15 H 1.08000 * 120.00233 * 180.02562 * 14 13 12 16 16 C 1.38819 * 120.00270 * 0.04099 * 14 13 12 17 17 N 1.31622 * 119.99585 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00145 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47477 * 89.99930 * 18 16 14 20 20 H 1.48502 * 109.47057 * 210.00171 * 18 16 14 21 21 H 1.48506 * 109.47340 * 329.99620 * 18 16 14 22 22 C 1.47018 * 108.70634 * 24.00182 * 13 12 11 23 23 C 1.50693 * 109.46968 * 270.00151 * 3 2 1 24 24 C 1.38249 * 119.97610 * 324.71885 * 23 3 2 25 25 C 1.38196 * 120.02459 * 179.77135 * 24 23 3 26 26 C 1.38463 * 119.97452 * 0.51089 * 25 24 23 27 27 F 1.35100 * 120.02333 * 179.76827 * 26 25 24 28 28 C 1.38447 * 119.94889 * 359.74404 * 26 25 24 29 29 C 1.38197 * 119.97661 * 0.02562 * 28 26 25 30 30 H 1.09000 * 109.47617 * 300.00145 * 1 2 3 31 31 H 1.09001 * 109.46913 * 60.00456 * 1 2 3 32 32 H 1.09004 * 109.47180 * 179.97438 * 1 2 3 33 33 H 0.97000 * 119.99894 * 359.71837 * 7 5 3 34 34 H 1.08995 * 109.47421 * 299.99467 * 8 7 5 35 35 H 1.09001 * 109.47621 * 60.00103 * 8 7 5 36 36 H 1.09006 * 111.00143 * 271.93889 * 11 9 8 37 37 H 1.09003 * 111.00830 * 35.78694 * 11 9 8 38 38 H 1.08999 * 110.41882 * 204.29446 * 12 11 9 39 39 H 1.09002 * 110.30131 * 82.08731 * 12 11 9 40 40 H 0.96996 * 119.99420 * 179.97438 * 17 16 14 41 41 H 1.09005 * 109.88303 * 239.52297 * 22 13 12 42 42 H 1.08996 * 110.01100 * 118.43109 * 22 13 12 43 43 H 1.07998 * 119.98281 * 0.02699 * 24 23 3 44 44 H 1.08003 * 120.01402 * 180.25571 * 25 24 23 45 45 H 1.08005 * 120.01636 * 179.97438 * 28 26 25 46 46 H 1.08000 * 119.98909 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3386 1.2640 0.7105 6 8 3.7896 0.2045 1.0915 7 7 4.0226 2.4048 0.9274 8 6 5.3111 2.3651 1.6234 9 6 5.8730 3.7836 1.7376 10 1 5.1473 4.4477 2.2072 11 6 7.2084 3.7832 2.5275 12 6 7.9052 5.0463 1.9571 13 7 7.5387 5.0704 0.5293 14 6 8.2466 5.6896 -0.4659 15 1 7.8927 5.6497 -1.4855 16 6 9.4194 6.3684 -0.1645 17 7 9.8506 6.4173 1.0781 18 14 10.3846 7.2137 -1.5220 19 1 9.9070 8.6117 -1.6723 20 1 11.8282 7.2185 -1.1737 21 1 10.1862 6.4828 -2.7995 22 6 6.2869 4.3202 0.3511 23 6 2.2145 1.7644 -1.4208 24 6 2.5651 0.8514 -2.3979 25 6 2.7480 1.2703 -3.7020 26 6 2.5904 2.6067 -4.0279 27 9 2.7736 3.0181 -5.3016 28 6 2.2444 3.5210 -3.0475 29 6 2.0573 3.0991 -1.7449 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.6619 3.2520 0.6226 34 1 5.1727 1.9474 2.6206 35 1 6.0082 1.7427 1.0623 36 1 7.0290 3.8824 3.5981 37 1 7.7897 2.8867 2.3118 38 1 8.9865 4.9677 2.0700 39 1 7.5361 5.9409 2.4586 40 1 10.6702 6.8913 1.2887 41 1 6.4474 3.4889 -0.3354 42 1 5.5102 4.9780 -0.0388 43 1 2.6920 -0.1903 -2.1426 44 1 3.0179 0.5562 -4.4660 45 1 2.1215 4.5639 -3.3004 46 1 1.7870 3.8121 -0.9801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663644521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:26 Heat of formation + Delta-G solvation = -93.041127 kcal Electronic energy + Delta-G solvation = -29159.258137 eV Core-core repulsion = 24963.423964 eV Total energy + Delta-G solvation = -4195.834173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.95465 -41.45806 -39.93887 -39.19777 -38.27529 -36.05288 -34.38012 -32.91144 -32.13875 -31.53885 -29.94266 -28.64168 -27.39190 -26.57690 -24.98358 -24.05835 -23.04269 -22.16969 -21.44054 -21.00648 -18.96918 -18.76966 -18.41472 -18.08312 -17.75778 -17.03682 -16.87356 -16.63490 -16.62650 -16.26054 -15.72200 -15.64355 -15.55381 -15.26447 -14.70511 -14.50256 -14.36301 -14.26548 -14.20362 -13.77009 -13.53653 -13.37595 -13.32483 -13.14360 -12.84304 -12.75333 -12.67660 -12.37681 -12.02060 -11.99309 -11.86015 -11.81736 -11.56942 -11.37146 -11.17034 -10.73810 -10.68078 -10.13445 -10.11312 -9.64876 -8.86537 -7.77094 -5.20629 -0.02161 0.22506 1.46304 1.47631 1.51381 1.56316 1.83292 2.48280 2.49610 3.04434 3.23031 3.32535 3.49076 3.63395 3.72358 3.75871 3.85173 3.91246 4.00314 4.02161 4.08724 4.28619 4.40294 4.47409 4.54423 4.59360 4.67080 4.71549 4.81814 4.88372 4.90111 4.92587 4.93028 5.07032 5.11293 5.15462 5.18605 5.33430 5.34992 5.42614 5.49094 5.68290 5.83003 5.84647 6.02250 6.33345 6.51571 7.12473 7.17413 7.80580 8.43522 9.24655 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.003301 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.792771 B = 8480.991599 C =10612.669153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.380 6.380 3 C 0.125 3.875 4 H 0.135 0.865 5 C 0.515 3.485 6 O -0.567 6.567 7 N -0.709 5.709 8 C 0.144 3.856 9 C -0.093 4.093 10 H 0.103 0.897 11 C -0.123 4.123 12 C 0.152 3.848 13 N -0.628 5.628 14 C -0.238 4.238 15 H 0.078 0.922 16 C -0.067 4.067 17 N -0.948 5.948 18 Si 0.977 3.023 19 H -0.285 1.285 20 H -0.294 1.294 21 H -0.272 1.272 22 C 0.139 3.861 23 C -0.132 4.132 24 C -0.069 4.069 25 C -0.162 4.162 26 C 0.085 3.915 27 F -0.149 7.149 28 C -0.154 4.154 29 C -0.070 4.070 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.414 0.586 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.069 0.931 39 H -0.008 1.008 40 H 0.247 0.753 41 H 0.014 0.986 42 H 0.032 0.968 43 H 0.132 0.868 44 H 0.145 0.855 45 H 0.155 0.845 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.335 -8.593 -2.424 24.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.298 6.298 3 C 0.063 3.937 4 H 0.152 0.848 5 C 0.301 3.699 6 O -0.445 6.445 7 N -0.362 5.362 8 C 0.021 3.979 9 C -0.112 4.112 10 H 0.121 0.879 11 C -0.162 4.162 12 C 0.027 3.973 13 N -0.354 5.354 14 C -0.367 4.367 15 H 0.095 0.905 16 C -0.259 4.259 17 N -0.597 5.597 18 Si 0.805 3.195 19 H -0.212 1.212 20 H -0.220 1.220 21 H -0.198 1.198 22 C 0.014 3.986 23 C -0.133 4.133 24 C -0.088 4.088 25 C -0.180 4.180 26 C 0.066 3.934 27 F -0.128 7.128 28 C -0.172 4.172 29 C -0.088 4.088 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.250 0.750 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.010 0.990 40 H 0.056 0.944 41 H 0.032 0.968 42 H 0.050 0.950 43 H 0.150 0.850 44 H 0.162 0.838 45 H 0.173 0.827 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -22.729 -9.406 -2.242 24.700 hybrid contribution 0.770 1.114 -1.276 1.860 sum -21.959 -8.292 -3.517 23.734 Atomic orbital electron populations 1.23122 0.78406 1.04384 1.01504 1.88026 1.22063 1.24966 1.94759 1.20689 0.93037 0.87952 0.91977 0.84754 1.20679 0.86663 0.83645 0.78900 1.90712 1.70204 1.31346 1.52236 1.45812 1.21572 1.09703 1.59102 1.21222 0.83603 0.95926 0.97197 1.22298 0.97649 0.95385 0.95857 0.87930 1.22888 0.95102 0.98452 0.99788 1.21761 1.00175 0.92648 0.82706 1.44803 1.24558 1.61486 1.04548 1.19419 1.03009 1.25254 0.89013 0.90451 1.25592 0.99443 1.02107 0.98764 1.70051 1.23926 1.47865 1.17902 0.85103 0.77474 0.78380 0.78539 1.21164 1.22019 1.19754 1.21484 0.87871 0.93597 0.95619 1.20179 1.03610 0.94641 0.94882 1.20934 0.95641 1.00675 0.91509 1.21303 1.03759 0.94618 0.98348 1.18101 1.02127 0.93915 0.79269 1.91486 1.92956 1.91103 1.37266 1.21405 1.02259 1.00752 0.92800 1.21202 0.96636 0.94650 0.96324 0.91994 0.92652 0.88305 0.74972 0.90247 0.93331 0.88983 0.92212 0.91326 0.98962 0.94363 0.96763 0.95034 0.84967 0.83765 0.82689 0.81086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.81 113.37 1.23 1.47 16 2 O -0.38 -7.68 9.04 -129.99 -1.18 -8.86 16 3 C 0.12 2.16 2.72 29.10 0.08 2.24 16 4 H 0.14 1.25 7.70 -2.38 -0.02 1.23 16 5 C 0.52 12.78 7.16 87.66 0.63 13.40 16 6 O -0.57 -19.56 16.51 15.95 0.26 -19.30 16 7 N -0.71 -15.46 5.39 -463.07 -2.49 -17.96 16 8 C 0.14 3.82 5.00 86.38 0.43 4.25 16 9 C -0.09 -2.74 2.98 -9.60 -0.03 -2.77 16 10 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 11 C -0.12 -4.28 6.55 32.06 0.21 -4.07 16 12 C 0.15 7.29 5.89 86.93 0.51 7.81 16 13 N -0.63 -31.73 3.40 -691.54 -2.35 -34.08 16 14 C -0.24 -13.31 10.27 84.04 0.86 -12.44 16 15 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 16 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 17 N -0.95 -56.29 10.09 21.65 0.22 -56.07 16 18 Si 0.98 45.78 29.55 68.60 2.03 47.80 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 22 C 0.14 5.35 6.64 86.73 0.58 5.92 16 23 C -0.13 -2.28 4.91 -19.86 -0.10 -2.37 16 24 C -0.07 -1.40 9.35 22.26 0.21 -1.20 16 25 C -0.16 -3.25 10.03 22.31 0.22 -3.03 16 26 C 0.08 1.79 7.30 22.37 0.16 1.95 16 27 F -0.15 -3.54 17.27 44.97 0.78 -2.76 16 28 C -0.15 -2.59 10.03 22.31 0.22 -2.36 16 29 C -0.07 -0.96 9.52 22.26 0.21 -0.75 16 30 H 0.06 0.50 8.08 -2.39 -0.02 0.48 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.41 6.75 8.24 -92.71 -0.76 5.99 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.05 1.53 8.00 -2.39 -0.02 1.51 16 36 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 37 H 0.06 2.13 8.05 -2.39 -0.02 2.11 16 38 H 0.07 3.83 5.87 -2.39 -0.01 3.82 16 39 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.25 14.25 8.31 -92.71 -0.77 13.47 16 41 H 0.01 0.58 7.73 -2.38 -0.02 0.56 16 42 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.13 2.82 7.63 -2.91 -0.02 2.80 16 44 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 45 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 46 H 0.17 1.06 8.06 -2.91 -0.02 1.03 16 Total: -1.00 -75.87 385.84 3.39 -72.48 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.23 Total: 14.00 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 5.90 Total: 4.74 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -4.62 Total: -108.11 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.91 Total: -28.16 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -75.87 3.39 -72.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663644521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.559 kcal (2) G-P(sol) polarization free energy of solvation -75.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds