Wall clock time and date at job start Sat Apr 11 2020 04:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42906 * 113.99919 * 2 1 4 4 H 1.08998 * 109.47096 * 29.99846 * 3 2 1 5 5 C 1.50694 * 109.47146 * 150.00050 * 3 2 1 6 6 O 1.21283 * 120.00331 * 4.99392 * 5 3 2 7 7 N 1.34778 * 119.99966 * 184.99691 * 5 3 2 8 8 C 1.46498 * 119.99983 * 179.97438 * 7 5 3 9 9 C 1.53004 * 109.47134 * 180.02562 * 8 7 5 10 10 H 1.09001 * 110.63893 * 305.70358 * 9 8 7 11 11 C 1.55157 * 110.71851 * 182.56422 * 9 8 7 12 12 C 1.54912 * 101.57784 * 206.13368 * 11 9 8 13 13 N 1.47426 * 104.83345 * 37.00714 * 12 11 9 14 14 C 1.36937 * 125.64597 * 155.83178 * 13 12 11 15 15 H 1.08007 * 119.99721 * 180.02562 * 14 13 12 16 16 C 1.38812 * 120.00407 * 0.03136 * 14 13 12 17 17 N 1.31627 * 119.99684 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00244 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46916 * 59.99618 * 18 16 14 20 20 H 1.48493 * 109.46977 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46929 * 299.99741 * 18 16 14 22 22 C 1.47317 * 108.73600 * 335.71725 * 13 12 11 23 23 C 1.50706 * 109.46730 * 269.99746 * 3 2 1 24 24 C 1.38244 * 119.97008 * 145.00018 * 23 3 2 25 25 C 1.38205 * 120.02263 * 179.97438 * 24 23 3 26 26 C 1.38459 * 119.97412 * 0.28333 * 25 24 23 27 27 F 1.35099 * 120.02759 * 179.72396 * 26 25 24 28 28 C 1.38466 * 119.94836 * 359.48301 * 26 25 24 29 29 C 1.38195 * 119.97197 * 0.49199 * 28 26 25 30 30 H 1.09002 * 109.47229 * 300.00410 * 1 2 3 31 31 H 1.09007 * 109.46699 * 60.00186 * 1 2 3 32 32 H 1.08999 * 109.46910 * 180.02562 * 1 2 3 33 33 H 0.96999 * 119.99793 * 0.02562 * 7 5 3 34 34 H 1.08997 * 109.47361 * 300.00468 * 8 7 5 35 35 H 1.09003 * 109.47275 * 60.00404 * 8 7 5 36 36 H 1.08997 * 111.00250 * 324.20348 * 11 9 8 37 37 H 1.08995 * 111.00765 * 88.02047 * 11 9 8 38 38 H 1.09000 * 110.36312 * 155.84598 * 12 11 9 39 39 H 1.08999 * 110.36523 * 278.16676 * 12 11 9 40 40 H 0.97001 * 119.99554 * 179.97438 * 17 16 14 41 41 H 1.08994 * 110.06225 * 241.87223 * 22 13 12 42 42 H 1.08996 * 109.85158 * 120.60994 * 22 13 12 43 43 H 1.07999 * 119.98932 * 359.97438 * 24 23 3 44 44 H 1.08002 * 120.00949 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.00962 * 180.25357 * 28 26 25 46 46 H 1.08000 * 119.98534 * 179.78274 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3386 1.2640 0.7104 6 8 3.7897 0.2046 1.0915 7 7 4.0254 2.4041 0.9223 8 6 5.3165 2.3638 1.6134 9 6 5.8805 3.7818 1.7235 10 1 5.9291 4.2533 0.7420 11 6 7.2794 3.7656 2.3946 12 6 7.3450 5.1852 3.0110 13 7 5.9728 5.4589 3.4754 14 6 5.6261 6.3388 4.4657 15 1 4.5879 6.4681 4.7339 16 6 6.6088 7.0646 5.1247 17 7 7.8740 6.9068 4.7980 18 14 6.1356 8.2655 6.4751 19 1 5.4374 7.5359 7.5640 20 1 7.3595 8.9089 7.0165 21 1 5.2337 9.3057 5.9187 22 6 5.0357 4.6314 2.6961 23 6 2.2146 1.7643 -1.4209 24 6 2.0569 3.0989 -1.7451 25 6 2.2445 3.5210 -3.0477 26 6 2.5848 2.6056 -4.0292 27 9 2.7631 3.0160 -5.3039 28 6 2.7473 1.2699 -3.7023 29 6 2.5596 0.8503 -2.3990 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 3.6645 3.2514 0.6179 34 1 5.1814 1.9483 2.6119 35 1 6.0104 1.7391 1.0508 36 1 7.3322 3.0005 3.1692 37 1 8.0664 3.6237 1.6540 38 1 8.0401 5.2025 3.8504 39 1 7.6423 5.9131 2.2561 40 1 8.5607 7.4143 5.2583 41 1 4.3525 5.2684 2.1344 42 1 4.4732 3.9798 3.3648 43 1 1.7870 3.8120 -0.9802 44 1 2.1209 4.5636 -3.3008 45 1 3.0167 0.5557 -4.4663 46 1 2.6828 -0.1920 -2.1445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663644522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:31 Heat of formation + Delta-G solvation = -72.441642 kcal Electronic energy + Delta-G solvation = -28826.213431 eV Core-core repulsion = 24631.272519 eV Total energy + Delta-G solvation = -4194.940912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.22020 -40.59207 -39.00445 -37.90384 -37.32591 -34.68710 -32.74671 -31.96852 -31.50844 -29.84058 -28.52473 -27.79084 -26.22172 -25.26294 -23.51666 -23.41861 -22.22045 -20.77242 -19.99057 -19.67319 -18.10325 -17.62221 -17.32571 -16.97757 -16.81274 -16.14469 -15.90429 -15.58117 -15.35699 -14.99403 -14.75751 -14.58309 -14.36828 -13.98593 -13.83774 -13.66099 -13.57633 -13.14088 -12.83634 -12.59115 -12.53495 -12.12643 -11.83184 -11.76341 -11.69971 -11.51409 -11.34230 -10.97936 -10.80934 -10.49105 -10.37622 -10.17051 -10.04904 -9.91548 -9.76015 -9.53743 -9.49266 -9.03615 -8.91062 -8.67012 -6.86188 -5.67479 -3.09415 0.65436 0.85267 2.51093 2.71004 3.13723 3.38604 3.42829 3.44316 3.80081 3.89145 4.18507 4.35027 4.46241 4.51519 4.62367 4.66680 4.87751 5.01370 5.04877 5.06735 5.09663 5.23320 5.36333 5.37618 5.49179 5.50362 5.56147 5.67034 5.73482 5.84459 5.85766 5.99932 6.04137 6.08059 6.31707 6.37303 6.47356 6.51065 6.56649 6.63870 6.71026 6.87396 7.45726 7.49192 7.59385 7.83558 8.15746 8.34288 9.19738 9.80566 10.45432 11.36346 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.013640 B = 0.002542 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.327261 B =11013.947154 C =11718.348445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.116 3.884 4 H 0.098 0.902 5 C 0.518 3.482 6 O -0.518 6.518 7 N -0.719 5.719 8 C 0.134 3.866 9 C -0.115 4.115 10 H 0.076 0.924 11 C -0.135 4.135 12 C 0.152 3.848 13 N -0.604 5.604 14 C -0.224 4.224 15 H 0.076 0.924 16 C -0.011 4.011 17 N -0.922 5.922 18 Si 0.915 3.085 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.286 1.286 22 C 0.141 3.859 23 C -0.128 4.128 24 C -0.079 4.079 25 C -0.152 4.152 26 C 0.104 3.896 27 F -0.139 7.139 28 C -0.155 4.155 29 C -0.057 4.057 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.400 0.600 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.012 0.988 40 H 0.253 0.747 41 H 0.018 0.982 42 H 0.025 0.975 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.740 -10.954 -16.387 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.268 6.268 3 C 0.054 3.946 4 H 0.116 0.884 5 C 0.301 3.699 6 O -0.393 6.393 7 N -0.372 5.372 8 C 0.011 3.989 9 C -0.134 4.134 10 H 0.094 0.906 11 C -0.174 4.174 12 C 0.027 3.973 13 N -0.331 5.331 14 C -0.353 4.353 15 H 0.094 0.906 16 C -0.206 4.206 17 N -0.571 5.571 18 Si 0.745 3.255 19 H -0.212 1.212 20 H -0.215 1.215 21 H -0.212 1.212 22 C 0.015 3.985 23 C -0.129 4.129 24 C -0.097 4.097 25 C -0.170 4.170 26 C 0.085 3.915 27 F -0.118 7.118 28 C -0.174 4.174 29 C -0.075 4.075 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.111 0.889 33 H 0.234 0.766 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.043 0.957 43 H 0.155 0.845 44 H 0.158 0.842 45 H 0.155 0.845 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.182 -11.743 -15.988 23.818 hybrid contribution -0.643 1.481 0.147 1.621 sum -13.826 -10.263 -15.841 23.397 Atomic orbital electron populations 1.22931 0.80317 1.03412 1.00321 1.88049 1.19930 1.24216 1.94631 1.20721 0.94551 0.87336 0.92016 0.88449 1.20022 0.85688 0.84454 0.79704 1.90732 1.68793 1.29677 1.50118 1.45959 1.22369 1.09059 1.59784 1.21496 0.82779 0.97505 0.97135 1.22450 0.97825 0.93470 0.99649 0.90578 1.23007 0.93738 1.01634 0.99048 1.21932 0.88550 0.88368 0.98405 1.44565 1.01585 1.46940 1.39977 1.19025 0.92821 1.14281 1.09156 0.90608 1.24791 0.95373 1.00330 1.00141 1.69788 0.98913 1.44350 1.44017 0.86151 0.77001 0.80726 0.81603 1.21151 1.21544 1.21233 1.21381 0.92590 0.92398 0.92130 1.20142 1.03312 0.94113 0.95303 1.20911 0.97905 0.94853 0.96063 1.21128 1.03094 1.00170 0.92635 1.17812 1.01263 0.93293 0.79144 1.91514 1.92809 1.91035 1.36410 1.21195 1.03757 0.94384 0.98041 1.20910 0.94904 1.00651 0.91060 0.93512 0.93690 0.88941 0.76586 0.91020 0.91504 0.91789 0.92092 0.87505 0.97027 0.93648 0.96436 0.95727 0.84488 0.84237 0.84475 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.81 101.05 1.09 1.28 16 2 O -0.35 -3.87 9.03 -55.09 -0.50 -4.37 16 3 C 0.12 1.16 2.73 -29.04 -0.08 1.08 16 4 H 0.10 0.73 7.70 -51.93 -0.40 0.33 16 5 C 0.52 6.94 7.17 -10.99 -0.08 6.86 16 6 O -0.52 -9.13 16.51 -14.30 -0.24 -9.37 16 7 N -0.72 -8.87 5.38 -60.30 -0.32 -9.20 16 8 C 0.13 1.93 5.00 -4.04 -0.02 1.91 16 9 C -0.11 -1.84 2.98 -88.79 -0.26 -2.11 16 10 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 11 C -0.13 -2.46 6.54 -24.58 -0.16 -2.62 16 12 C 0.15 3.61 5.89 -2.53 -0.01 3.60 16 13 N -0.60 -15.14 3.40 -169.84 -0.58 -15.72 16 14 C -0.22 -6.17 10.28 -15.06 -0.15 -6.33 16 15 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 16 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 17 N -0.92 -26.62 10.09 55.49 0.56 -26.06 16 18 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.14 2.76 6.66 -2.90 -0.02 2.74 16 23 C -0.13 -1.15 4.91 -104.61 -0.51 -1.66 16 24 C -0.08 -0.60 9.51 -39.59 -0.38 -0.98 16 25 C -0.15 -1.23 10.03 -39.51 -0.40 -1.63 16 26 C 0.10 0.97 7.30 -39.42 -0.29 0.68 16 27 F -0.14 -1.42 17.27 2.25 0.04 -1.38 16 28 C -0.16 -1.36 10.03 -39.51 -0.40 -1.75 16 29 C -0.06 -0.53 9.35 -39.59 -0.37 -0.90 16 30 H 0.05 0.29 8.09 -51.93 -0.42 -0.13 16 31 H 0.04 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.40 4.07 8.23 -40.82 -0.34 3.73 16 34 H 0.07 1.14 8.00 -51.93 -0.42 0.73 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.16 8.05 -51.93 -0.42 0.75 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.11 2.88 5.87 -51.93 -0.30 2.57 16 39 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 43 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.14 1.33 7.63 -52.49 -0.40 0.93 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -33.36 385.80 -9.25 -42.61 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.87 Total: 1.10 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.14 Total: -0.22 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.34 Total: -50.98 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.73 Total: -13.74 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.36 -9.25 -42.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663644522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.828 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds