Wall clock time and date at job start Sat Apr 11 2020 04:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00020 * 2 1 4 4 H 1.09002 * 109.47090 * 30.00336 * 3 2 1 5 5 C 1.50698 * 109.47167 * 270.00586 * 3 2 1 6 6 O 1.21275 * 120.00605 * 354.99737 * 5 3 2 7 7 N 1.34783 * 120.00109 * 174.99542 * 5 3 2 8 8 C 1.46499 * 120.00359 * 179.97438 * 7 5 3 9 9 C 1.53001 * 109.47095 * 180.02562 * 8 7 5 10 10 H 1.09002 * 110.64202 * 305.69997 * 9 8 7 11 11 C 1.55162 * 110.71709 * 182.55924 * 9 8 7 12 12 C 1.54912 * 101.57717 * 205.95763 * 11 9 8 13 13 N 1.47422 * 104.83500 * 37.00946 * 12 11 9 14 14 C 1.36936 * 125.64421 * 155.90551 * 13 12 11 15 15 H 1.08001 * 119.99865 * 179.97438 * 14 13 12 16 16 C 1.38809 * 120.00455 * 359.97438 * 14 13 12 17 17 N 1.31622 * 119.99854 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00261 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46885 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47489 * 119.99806 * 18 16 14 21 21 H 1.48504 * 109.46914 * 240.00266 * 18 16 14 22 22 C 1.47018 * 108.70074 * 335.87099 * 13 12 11 23 23 C 1.50693 * 109.47470 * 150.00208 * 3 2 1 24 24 C 1.38255 * 119.97290 * 39.72828 * 23 3 2 25 25 C 1.38193 * 120.02442 * 179.72775 * 24 23 3 26 26 C 1.38458 * 119.97514 * 0.56988 * 25 24 23 27 27 F 1.35095 * 120.02742 * 179.68364 * 26 25 24 28 28 C 1.38462 * 119.94901 * 359.70669 * 26 25 24 29 29 C 1.38196 * 119.97345 * 359.97438 * 28 26 25 30 30 H 1.08997 * 109.47434 * 59.99647 * 1 2 3 31 31 H 1.09002 * 109.46816 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46988 * 299.99318 * 1 2 3 33 33 H 0.97004 * 119.99686 * 0.02562 * 7 5 3 34 34 H 1.08993 * 109.47119 * 60.00193 * 8 7 5 35 35 H 1.09002 * 109.47071 * 300.00191 * 8 7 5 36 36 H 1.08999 * 111.00577 * 324.02794 * 11 9 8 37 37 H 1.09004 * 111.00046 * 87.84773 * 11 9 8 38 38 H 1.09003 * 110.36123 * 155.85332 * 12 11 9 39 39 H 1.09001 * 110.36394 * 278.16548 * 12 11 9 40 40 H 0.97000 * 120.00270 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.88087 * 241.63802 * 22 13 12 42 42 H 1.09003 * 109.87911 * 120.47955 * 22 13 12 43 43 H 1.07998 * 119.98415 * 359.97438 * 24 23 3 44 44 H 1.07999 * 120.01128 * 180.25601 * 25 24 23 45 45 H 1.08001 * 120.01156 * 179.97438 * 28 26 25 46 46 H 1.08003 * 119.98954 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2144 1.7644 -1.4208 6 8 1.9790 1.0108 -2.3413 7 7 2.6587 3.0125 -1.6686 8 6 2.8577 3.4586 -3.0497 9 6 3.3635 4.9026 -3.0514 10 1 2.6928 5.5453 -2.4811 11 6 3.5233 5.4265 -4.5032 12 6 4.6112 6.5145 -4.3231 13 7 5.5301 5.9653 -3.3095 14 6 6.8451 6.3134 -3.1524 15 1 7.4369 5.8517 -2.3759 16 6 7.4176 7.2598 -3.9912 17 7 6.6966 7.8221 -4.9379 18 14 9.2116 7.7342 -3.7773 19 1 9.7964 6.9634 -2.6507 20 1 9.9564 7.4297 -5.0253 21 1 9.3080 9.1870 -3.4851 22 6 4.8006 4.9825 -2.4950 23 6 3.3386 1.2639 0.7103 24 6 4.1869 0.1878 0.5265 25 6 5.4077 0.1513 1.1730 26 6 5.7762 1.1874 2.0142 27 9 6.9667 1.1497 2.6517 28 6 4.9235 2.2619 2.2020 29 6 3.7059 2.2994 1.5494 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.8473 3.6153 -0.9323 34 1 1.9122 3.4038 -3.5891 35 1 3.5916 2.8164 -3.5368 36 1 3.8686 4.6351 -5.1684 37 1 2.5918 5.8608 -4.8665 38 1 5.1386 6.6826 -5.2621 39 1 4.1642 7.4426 -3.9668 40 1 7.0965 8.4837 -5.5238 41 1 4.7778 5.3072 -1.4547 42 1 5.2823 4.0076 -2.5708 43 1 3.8969 -0.6228 -0.1257 44 1 6.0719 -0.6875 1.0260 45 1 5.2097 3.0705 2.8584 46 1 3.0407 3.1377 1.6954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663644523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:36 Heat of formation + Delta-G solvation = -73.441873 kcal Electronic energy + Delta-G solvation = -29155.009812 eV Core-core repulsion = 24960.025527 eV Total energy + Delta-G solvation = -4194.984285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.07754 -40.56535 -38.93385 -37.93882 -37.23075 -34.68699 -32.75369 -32.00146 -31.41202 -29.84243 -28.45105 -27.58143 -26.33652 -25.25477 -23.48660 -23.30925 -22.17431 -20.75817 -19.99276 -19.66403 -17.98008 -17.68116 -17.26975 -16.89768 -16.81526 -16.01766 -15.75772 -15.67395 -15.27529 -14.83610 -14.76640 -14.59461 -14.33887 -13.90938 -13.75311 -13.64928 -13.46651 -13.11667 -12.81322 -12.53256 -12.50264 -11.95592 -11.81730 -11.77512 -11.61009 -11.50452 -11.22739 -10.96533 -10.86816 -10.82191 -10.41896 -10.12660 -10.02402 -9.86746 -9.65290 -9.48918 -9.36415 -9.02840 -8.79969 -8.66687 -6.84960 -5.66959 -3.08611 0.76996 0.98201 2.47230 2.93644 3.18413 3.38918 3.44770 3.47075 3.65734 4.01579 4.30402 4.43447 4.47313 4.57747 4.67178 4.68767 4.97777 5.03057 5.09134 5.15311 5.17836 5.22243 5.37300 5.42569 5.50929 5.59259 5.67007 5.68131 5.85337 5.85578 5.95762 6.03004 6.07729 6.10216 6.32147 6.37970 6.52756 6.55726 6.58317 6.65486 6.71292 6.88226 7.45681 7.49088 7.61987 7.83874 8.14270 8.34841 9.20816 9.81722 10.46180 11.37066 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.010329 B = 0.003363 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.104855 B = 8324.142966 C =10574.523577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.119 3.881 4 H 0.095 0.905 5 C 0.492 3.508 6 O -0.525 6.525 7 N -0.719 5.719 8 C 0.132 3.868 9 C -0.115 4.115 10 H 0.076 0.924 11 C -0.135 4.135 12 C 0.152 3.848 13 N -0.604 5.604 14 C -0.222 4.222 15 H 0.077 0.923 16 C -0.012 4.012 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.143 3.857 23 C -0.104 4.104 24 C -0.054 4.054 25 C -0.154 4.154 26 C 0.108 3.892 27 F -0.138 7.138 28 C -0.150 4.150 29 C -0.077 4.077 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.400 0.600 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.012 0.988 40 H 0.251 0.749 41 H 0.017 0.983 42 H 0.024 0.976 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.476 -12.990 13.709 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C 0.057 3.943 4 H 0.113 0.887 5 C 0.277 3.723 6 O -0.401 6.401 7 N -0.372 5.372 8 C 0.009 3.991 9 C -0.134 4.134 10 H 0.094 0.906 11 C -0.175 4.175 12 C 0.027 3.973 13 N -0.330 5.330 14 C -0.350 4.350 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.571 5.571 18 Si 0.744 3.256 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.218 1.218 22 C 0.017 3.983 23 C -0.104 4.104 24 C -0.072 4.072 25 C -0.173 4.173 26 C 0.089 3.911 27 F -0.117 7.117 28 C -0.169 4.169 29 C -0.095 4.095 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.234 0.766 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.062 0.938 41 H 0.035 0.965 42 H 0.042 0.958 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.158 0.842 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.332 -13.590 12.968 22.471 hybrid contribution 1.042 0.870 0.604 1.486 sum -11.290 -12.720 13.572 21.760 Atomic orbital electron populations 1.22893 0.80185 1.03458 1.00182 1.87988 1.20337 1.24216 1.94461 1.20700 0.93603 0.87514 0.92474 0.88688 1.21039 0.77767 0.82097 0.91433 1.90716 1.50149 1.53591 1.45634 1.46080 1.67020 1.14134 1.09928 1.21480 1.00876 0.95134 0.81579 1.22448 0.97734 0.93724 0.99492 0.90612 1.23013 1.00201 1.00506 0.93733 1.21932 0.88128 0.90768 0.96461 1.44507 1.07807 1.45442 1.35276 1.19119 0.84805 1.18040 1.13051 0.90504 1.24785 0.98433 0.99175 0.98302 1.69804 1.34416 1.31281 1.21580 0.86007 0.84281 0.77945 0.77341 1.20519 1.21703 1.21752 1.21306 0.89663 0.93424 0.93945 1.19400 0.95031 0.96519 0.99495 1.20893 0.91713 0.97606 0.96995 1.21192 0.98289 0.99219 0.98599 1.17805 0.82122 0.96319 0.94899 1.91517 1.43654 1.96552 1.79936 1.21097 0.94578 0.98446 1.02792 1.20808 0.96118 0.97796 0.94772 0.93425 0.88997 0.93790 0.76571 0.91571 0.91168 0.91832 0.92120 0.87523 0.97019 0.93782 0.96473 0.95832 0.84257 0.84409 0.84169 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.81 101.05 1.09 1.33 16 2 O -0.35 -3.91 9.20 -55.09 -0.51 -4.41 16 3 C 0.12 1.20 2.72 -29.04 -0.08 1.12 16 4 H 0.10 0.67 7.65 -51.93 -0.40 0.27 16 5 C 0.49 6.46 7.11 -10.98 -0.08 6.39 16 6 O -0.53 -8.94 16.51 -14.30 -0.24 -9.17 16 7 N -0.72 -8.84 5.39 -60.30 -0.32 -9.17 16 8 C 0.13 1.90 5.01 -4.04 -0.02 1.88 16 9 C -0.11 -1.85 2.98 -88.78 -0.26 -2.11 16 10 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 11 C -0.14 -2.46 6.53 -24.58 -0.16 -2.62 16 12 C 0.15 3.62 5.89 -2.53 -0.01 3.60 16 13 N -0.60 -15.29 3.39 -170.08 -0.58 -15.87 16 14 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 15 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 16 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 17 N -0.92 -26.75 10.09 55.49 0.56 -26.19 16 18 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 C 0.14 2.86 6.65 -3.07 -0.02 2.84 16 23 C -0.10 -1.05 4.92 -104.62 -0.52 -1.56 16 24 C -0.05 -0.59 9.35 -39.59 -0.37 -0.96 16 25 C -0.15 -1.62 10.03 -39.52 -0.40 -2.02 16 26 C 0.11 1.19 7.30 -39.42 -0.29 0.91 16 27 F -0.14 -1.66 17.27 2.25 0.04 -1.63 16 28 C -0.15 -1.44 10.03 -39.51 -0.40 -1.84 16 29 C -0.08 -0.66 9.67 -39.59 -0.38 -1.04 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 33 H 0.40 4.10 8.41 -40.82 -0.34 3.76 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.15 8.01 -51.93 -0.42 0.73 16 36 H 0.06 1.16 8.05 -51.93 -0.42 0.75 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.11 2.88 5.87 -51.93 -0.31 2.58 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.02 0.49 7.74 -51.93 -0.40 0.09 16 43 H 0.14 1.53 7.77 -52.49 -0.41 1.12 16 44 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 45 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 46 H 0.14 0.77 8.04 -52.48 -0.42 0.35 16 LS Contribution 386.34 15.07 5.82 5.82 Total: -1.00 -33.53 386.34 -9.27 -42.81 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.88 Total: 1.58 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.14 Total: -0.84 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.34 Total: -51.23 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.74 Total: -13.59 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.53 -9.27 -42.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663644523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.636 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds