Wall clock time and date at job start Sat Apr 11 2020 04:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86805 * 119.99829 * 2 1 4 4 H 1.48498 * 109.47117 * 270.00248 * 3 2 1 5 5 H 1.48502 * 109.46895 * 30.00225 * 3 2 1 6 6 H 1.48495 * 109.47007 * 149.99874 * 3 2 1 7 7 C 1.38952 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99798 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99500 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99549 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00055 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99740 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47182 * 180.02562 * 12 10 9 14 14 C 1.46902 * 111.00264 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.46878 * 179.97438 * 14 13 12 16 16 N 1.46504 * 109.46681 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99854 * 179.97438 * 16 15 14 18 18 O 1.21603 * 119.99960 * 0.02562 * 17 16 15 19 19 C 1.47523 * 120.00283 * 180.27861 * 17 16 15 20 20 C 1.36594 * 125.77562 * 179.73080 * 19 17 16 21 21 N 1.34812 * 106.84324 * 179.97438 * 20 19 17 22 22 C 1.46496 * 126.59720 * 179.97438 * 21 20 19 23 23 C 1.53004 * 109.46815 * 124.99861 * 22 21 20 24 24 C 1.52997 * 117.49611 * 243.62327 * 23 22 21 25 25 C 1.53000 * 117.49422 * 175.00042 * 23 22 21 26 26 N 1.40210 * 106.80939 * 359.97438 * 21 20 19 27 27 N 1.28767 * 108.36771 * 359.72209 * 26 21 20 28 28 H 0.96997 * 119.99873 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00491 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47091 * 60.00127 * 12 10 9 31 31 H 1.08999 * 109.47422 * 299.99316 * 12 10 9 32 32 H 1.00902 * 110.99455 * 303.95476 * 13 12 10 33 33 H 1.09000 * 109.46695 * 60.00184 * 14 13 12 34 34 H 1.08997 * 109.46952 * 299.99783 * 14 13 12 35 35 H 1.08998 * 109.47328 * 60.00151 * 15 14 13 36 36 H 1.08997 * 109.47540 * 299.99898 * 15 14 13 37 37 H 0.96990 * 120.00418 * 0.02562 * 16 15 14 38 38 H 1.08005 * 126.57383 * 359.97438 * 20 19 17 39 39 H 1.08996 * 109.47232 * 245.00366 * 22 21 20 40 40 H 1.08998 * 109.46946 * 5.00392 * 22 21 20 41 41 H 1.08995 * 115.54951 * 29.33850 * 23 22 21 42 42 H 1.08994 * 117.50234 * 0.02562 * 24 23 22 43 43 H 1.09007 * 117.49599 * 145.02633 * 24 23 22 44 44 H 1.09002 * 117.49584 * 214.97991 * 25 23 22 45 45 H 1.09001 * 117.50486 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2440 -4.8629 0.0000 13 7 2.1986 -5.9794 0.0005 14 6 1.4984 -7.2708 0.0017 15 6 2.5234 -8.4067 0.0016 16 7 1.8250 -9.6946 0.0034 17 6 2.5299 -10.8433 0.0031 18 8 3.7454 -10.8108 0.0017 19 6 1.8267 -12.1402 -0.0013 20 6 2.4203 -13.3704 -0.0073 21 7 1.4280 -14.2829 -0.0091 22 6 1.5813 -15.7399 -0.0157 23 6 0.8143 -16.3386 1.1651 24 6 1.6260 -17.0665 2.2385 25 6 0.7533 -17.8640 1.2672 26 7 0.2210 -13.5695 -0.0035 27 7 0.4936 -12.3110 0.0073 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3907 0.0002 30 1 0.6170 -4.9208 -0.8897 31 1 0.6178 -4.9205 0.8903 32 1 2.8335 -5.9127 -0.7809 33 1 0.8733 -7.3459 -0.8880 34 1 0.8739 -7.3446 0.8920 35 1 3.1489 -8.3318 0.8910 36 1 3.1476 -8.3327 -0.8889 37 1 0.8555 -9.7205 0.0041 38 1 3.4812 -13.5730 -0.0101 39 1 1.1854 -16.1426 -0.9480 40 1 2.6376 -15.9944 0.0705 41 1 -0.0615 -15.7771 1.4901 42 1 2.7063 -17.1184 2.1038 43 1 1.2843 -16.9837 3.2703 44 1 -0.1624 -18.3059 1.6599 45 1 1.2599 -18.4410 0.4935 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135963539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:41:47 Heat of formation + Delta-G solvation = 52.770756 kcal Electronic energy + Delta-G solvation = -26454.052586 eV Core-core repulsion = 22316.754004 eV Total energy + Delta-G solvation = -4137.298582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.61830 -39.58749 -38.39071 -38.27136 -36.26815 -34.71907 -34.24686 -33.69159 -31.47944 -31.19944 -29.52740 -28.35279 -26.09155 -24.30676 -23.50419 -23.12243 -22.93941 -22.01088 -21.62805 -20.42243 -19.25468 -18.60554 -17.87372 -17.00023 -16.67802 -16.28338 -16.10232 -15.85023 -15.69060 -15.15701 -14.98535 -14.83952 -14.52286 -14.40517 -14.17514 -13.85726 -13.70835 -13.36009 -13.10025 -12.80587 -12.42094 -12.36656 -12.25840 -11.90064 -11.70630 -11.49507 -11.41411 -11.38484 -11.29558 -11.01707 -11.00843 -10.67271 -10.39099 -10.36930 -10.19472 -9.71498 -9.48778 -9.19946 -8.46800 -8.08815 -7.93976 -6.39579 -3.80315 0.71541 1.36839 1.50732 2.84479 2.98060 3.05098 3.20015 3.28631 3.34988 3.56044 3.81657 3.92944 3.98637 4.13372 4.16361 4.20429 4.33080 4.43617 4.47025 4.58601 4.61691 4.89667 4.92321 4.97743 5.03930 5.16760 5.21879 5.28795 5.35572 5.37444 5.40756 5.46222 5.77317 5.87219 5.88643 5.94773 5.99049 6.20365 6.29098 7.13006 7.22937 7.57139 7.57560 7.61836 7.96350 8.08465 8.63473 9.20121 9.56393 10.07870 10.78178 Molecular weight = 336.17amu Principal moments of inertia in cm(-1) A = 0.044959 B = 0.001300 C = 0.001280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.644811 B =21525.138802 C =21865.423491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.052 3.948 13 N -0.665 5.665 14 C 0.048 3.952 15 C 0.121 3.879 16 N -0.712 5.712 17 C 0.605 3.395 18 O -0.537 6.537 19 C -0.101 4.101 20 C 0.096 3.904 21 N -0.358 5.358 22 C 0.154 3.846 23 C -0.178 4.178 24 C -0.176 4.176 25 C -0.164 4.164 26 N -0.061 5.061 27 N -0.205 5.205 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.352 0.648 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.408 0.592 38 H 0.205 0.795 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 -36.684 0.160 36.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.298 5.298 14 C -0.082 4.082 15 C -0.003 4.003 16 N -0.363 5.363 17 C 0.388 3.612 18 O -0.413 6.413 19 C -0.240 4.240 20 C -0.061 4.061 21 N -0.142 5.142 22 C 0.033 3.967 23 C -0.197 4.197 24 C -0.213 4.213 25 C -0.202 4.202 26 N -0.041 5.041 27 N -0.079 5.079 28 H 0.081 0.919 29 H 0.226 0.774 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.172 0.828 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.243 0.757 38 H 0.222 0.778 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.139 0.861 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.195 -36.591 0.842 36.620 hybrid contribution -0.072 0.708 -0.889 1.139 sum -1.268 -35.883 -0.046 35.905 Atomic orbital electron populations 1.69613 1.05943 1.28144 1.50647 1.25258 0.95623 0.99706 0.97310 0.85857 0.79274 0.80801 0.78361 1.20437 1.20934 1.19377 1.19717 0.93405 0.82236 1.47559 0.87889 1.41853 1.09198 1.04575 1.64373 1.19787 0.88393 0.84710 0.84550 1.90531 1.13730 1.87040 1.55325 1.21671 0.94228 0.90749 1.01400 1.59933 1.18870 0.99442 1.51586 1.22083 0.95543 0.89269 1.01278 1.21340 0.94978 0.80288 1.03669 1.45675 1.10967 1.05402 1.74281 1.16690 0.86089 0.81876 0.76495 1.90840 1.12605 1.87043 1.50778 1.21465 0.89924 0.95088 1.17548 1.23397 0.96823 0.88309 0.97601 1.50463 1.05963 1.08352 1.49448 1.21629 1.02279 0.72822 0.99988 1.22538 1.02902 0.95897 0.98334 1.23157 0.98383 1.03457 0.96263 1.23001 1.02685 0.91931 1.02536 1.81989 1.03031 0.96738 1.22388 1.74653 1.13488 1.09746 1.09970 0.91888 0.77443 0.93665 0.89423 0.82830 0.94750 0.90298 0.89856 0.91027 0.75673 0.77804 0.87759 0.87474 0.86121 0.88246 0.88222 0.87959 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 10 C 0.44 10.47 7.82 -10.99 -0.09 10.39 16 11 O -0.58 -15.98 15.78 5.55 0.09 -15.89 16 12 C 0.05 0.92 6.17 -4.97 -0.03 0.88 16 13 N -0.67 -10.69 6.13 -115.06 -0.70 -11.39 16 14 C 0.05 0.58 5.80 -3.82 -0.02 0.56 16 15 C 0.12 1.43 5.93 -4.04 -0.02 1.40 16 16 N -0.71 -7.68 5.55 -61.35 -0.34 -8.02 16 17 C 0.60 7.25 7.82 -12.48 -0.10 7.15 16 18 O -0.54 -7.86 16.86 5.27 0.09 -7.77 16 19 C -0.10 -1.03 6.99 -83.55 -0.58 -1.62 16 20 C 0.10 0.70 11.27 -16.84 -0.19 0.51 16 21 N -0.36 -2.40 3.69 -61.06 -0.23 -2.62 16 22 C 0.15 0.45 6.82 -4.04 -0.03 0.42 16 23 C -0.18 -0.63 5.93 -90.62 -0.54 -1.17 16 24 C -0.18 -0.48 10.18 -26.73 -0.27 -0.75 16 25 C -0.16 -0.35 10.25 -26.73 -0.27 -0.62 16 26 N -0.06 -0.60 13.48 60.35 0.81 0.21 16 27 N -0.20 -2.23 12.04 32.85 0.40 -1.84 16 28 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.35 5.82 8.43 -39.29 -0.33 5.49 16 33 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.41 3.79 8.16 -40.82 -0.33 3.45 16 38 H 0.21 0.87 8.06 -52.48 -0.42 0.45 16 39 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.11 0.04 7.82 -51.93 -0.41 -0.37 16 41 H 0.12 0.67 7.94 -51.93 -0.41 0.26 16 42 H 0.10 0.18 8.03 -51.93 -0.42 -0.24 16 43 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 LS Contribution 396.13 15.07 5.97 5.97 Total: -1.00 -35.43 396.13 -7.04 -42.47 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.38 Total: 12.00 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -2.39 Total: 9.08 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: 0.60 Total: -62.03 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: 0.18 Total: -23.66 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.43 -7.04 -42.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135963539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.241 kcal (2) G-P(sol) polarization free energy of solvation -35.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds