Wall clock time and date at job start Sat Apr 11 2020 04:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38256 * 119.99954 * 2 1 4 4 C 1.38216 * 119.99493 * 180.02562 * 3 2 1 5 5 C 1.38251 * 120.00452 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00020 * 179.97438 * 5 4 3 7 7 C 1.38218 * 119.99953 * 0.25984 * 5 4 3 8 8 C 1.50695 * 119.99818 * 179.72322 * 7 5 4 9 9 N 1.46894 * 109.47528 * 79.99928 * 8 7 5 10 10 C 1.46899 * 111.00173 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46990 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47109 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.47274 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99957 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00257 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99718 * 180.02562 * 14 13 12 17 17 S 1.80997 * 109.46835 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99972 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00054 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00048 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00109 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00003 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47410 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47297 * 120.00066 * 22 20 18 25 25 H 1.48504 * 109.47423 * 239.99645 * 22 20 18 26 26 C 1.38217 * 119.99908 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47175 * 90.00062 * 1 2 3 28 28 H 1.09000 * 109.47425 * 210.00151 * 1 2 3 29 29 H 1.09000 * 109.47482 * 330.00207 * 1 2 3 30 30 H 1.07994 * 119.99973 * 359.97438 * 3 2 1 31 31 H 1.08009 * 119.99396 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.47152 * 90.00315 * 6 5 4 33 33 H 1.09001 * 109.46980 * 330.00416 * 6 5 4 34 34 H 1.09004 * 109.47113 * 210.00397 * 6 5 4 35 35 H 1.09008 * 109.46780 * 199.99806 * 8 7 5 36 36 H 1.09002 * 109.47273 * 319.99723 * 8 7 5 37 37 H 1.00903 * 111.00039 * 56.04349 * 9 8 7 38 38 H 1.09003 * 109.46894 * 299.99465 * 10 9 8 39 39 H 1.08993 * 109.47656 * 60.00062 * 10 9 8 40 40 H 1.09003 * 109.46689 * 299.99375 * 11 10 9 41 41 H 1.08996 * 109.47538 * 59.99372 * 11 10 9 42 42 H 1.08999 * 109.47037 * 300.00243 * 12 11 10 43 43 H 1.09001 * 109.46991 * 59.99584 * 12 11 10 44 44 H 0.97003 * 120.00043 * 359.97438 * 13 12 11 45 45 H 1.09003 * 109.46953 * 299.99670 * 16 14 13 46 46 H 1.08998 * 109.46853 * 60.00289 * 16 14 13 47 47 H 0.96995 * 119.99912 * 180.02562 * 21 20 18 48 48 H 1.07999 * 119.99712 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2716 -0.0001 -0.0005 6 6 5.7787 -0.0001 -0.0017 7 6 3.5805 -1.1971 -0.0054 8 6 4.3340 -2.5021 -0.0117 9 7 4.7881 -2.8120 1.3505 10 6 5.5277 -4.0808 1.3830 11 6 5.9827 -4.3693 2.8150 12 6 6.7526 -5.6911 2.8490 13 7 7.1888 -5.9671 4.2201 14 6 7.8890 -7.0860 4.4921 15 8 8.1576 -7.8648 3.6019 16 6 8.3372 -7.3702 5.9026 17 16 9.2480 -8.9338 5.9427 18 6 9.6400 -9.0156 7.6587 19 1 9.3193 -8.2276 8.3240 20 6 10.3619 -10.0921 8.1551 21 7 10.7533 -11.0522 7.3441 22 14 10.7781 -10.1784 9.9740 23 1 10.2282 -8.9845 10.6649 24 1 10.1845 -11.4071 10.5599 25 1 12.2531 -10.2121 10.1434 26 6 2.1980 -1.1970 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6582 2.1326 -0.0004 31 1 4.1204 2.1326 -0.0010 32 1 6.1428 0.0003 1.0257 33 1 6.1416 0.8897 -0.5162 34 1 6.1416 -0.8903 -0.5155 35 1 3.6791 -3.2980 -0.3663 36 1 5.1970 -2.4202 -0.6725 37 1 4.0120 -2.8296 1.9951 38 1 4.8807 -4.8874 1.0383 39 1 6.3990 -4.0103 0.7318 40 1 6.6296 -3.5627 3.1601 41 1 5.1113 -4.4399 3.4659 42 1 6.1054 -6.4974 2.5040 43 1 7.6240 -5.6208 2.1980 44 1 6.9736 -5.3444 4.9321 45 1 8.9847 -6.5640 6.2474 46 1 7.4658 -7.4401 6.5536 47 1 11.2575 -11.8047 7.6911 48 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154802402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:41:57 Heat of formation + Delta-G solvation = -35.952022 kcal Electronic energy + Delta-G solvation = -24390.446913 eV Core-core repulsion = 20763.301485 eV Total energy + Delta-G solvation = -3627.145427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.13125 -39.16628 -37.15914 -35.13100 -34.06694 -32.45558 -32.41250 -30.75609 -29.62740 -28.93837 -26.29471 -25.47147 -25.06062 -23.76824 -22.33466 -21.80231 -20.43082 -20.19439 -17.81588 -16.81865 -16.29050 -16.17798 -16.09392 -15.94674 -15.45352 -15.09659 -14.98333 -14.79778 -14.41875 -14.14287 -13.90867 -13.67379 -13.56925 -13.20147 -13.12628 -13.07043 -12.79027 -12.60410 -12.51242 -12.28336 -12.03118 -11.85813 -11.75628 -11.70452 -11.34760 -11.10711 -11.07252 -11.05519 -11.01111 -10.74718 -9.79819 -9.39531 -9.21980 -9.07118 -8.88853 -8.83689 -8.71641 -8.22139 -6.49104 -6.21129 -3.91497 0.95381 1.01540 3.03143 3.12019 3.22091 3.26038 3.29977 3.34800 3.69203 3.97143 4.21090 4.33879 4.39531 4.50367 4.65078 4.70247 4.76706 4.80969 4.87257 4.95875 5.07919 5.13971 5.14191 5.16639 5.22470 5.25493 5.28694 5.36100 5.38284 5.42433 5.47708 5.53984 5.61884 5.67180 5.73592 5.87428 5.92829 5.94552 5.99886 6.06496 6.15495 6.21215 6.32348 6.53634 6.64811 6.68454 6.94408 7.60651 7.73120 8.36210 8.63425 9.24383 10.86416 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.028421 B = 0.001339 C = 0.001333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.937651 B =20908.010587 C =20999.680984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.116 4.116 4 C -0.121 4.121 5 C -0.064 4.064 6 C -0.111 4.111 7 C -0.084 4.084 8 C 0.097 3.903 9 N -0.682 5.682 10 C 0.062 3.938 11 C -0.128 4.128 12 C 0.123 3.877 13 N -0.739 5.739 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.110 4.110 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.037 0.963 36 H 0.084 0.916 37 H 0.342 0.658 38 H 0.034 0.966 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.398 0.602 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.268 0.732 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.977 26.024 -15.903 35.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.135 4.135 4 C -0.139 4.139 5 C -0.065 4.065 6 C -0.167 4.167 7 C -0.085 4.085 8 C -0.031 4.031 9 N -0.313 5.313 10 C -0.068 4.068 11 C -0.166 4.166 12 C -0.002 4.002 13 N -0.394 5.394 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.129 4.129 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.103 0.897 37 H 0.160 0.840 38 H 0.052 0.948 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.232 0.768 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.851 24.913 -17.482 35.283 hybrid contribution -0.951 0.547 2.438 2.674 sum -18.802 25.459 -15.043 35.043 Atomic orbital electron populations 1.20777 0.91275 1.02749 1.02237 1.19852 0.95990 0.93111 1.00612 1.21021 0.94224 0.97451 1.00761 1.21042 0.94124 0.97596 1.01137 1.19763 0.96300 0.92252 0.98156 1.20789 0.90869 1.02185 1.02906 1.19602 0.93086 0.94484 1.01286 1.20870 0.98162 0.92880 0.91189 1.60469 1.29981 1.33752 1.07095 1.21869 0.98307 0.89581 0.97041 1.21733 1.00685 0.97264 0.96914 1.21178 0.98682 0.96162 0.84186 1.45984 1.58428 1.24850 1.10113 1.20316 0.76932 0.80277 0.90788 1.90700 1.54444 1.46392 1.47761 1.23532 1.04575 1.07087 0.95204 1.85397 1.67611 1.18363 1.12115 1.22916 1.41198 1.10748 0.93458 0.90866 1.24993 0.94981 0.94665 0.98949 1.70029 1.35667 1.09631 1.34981 0.86115 0.78230 0.78187 0.82942 1.19617 1.20573 1.20566 1.20929 0.93449 0.97562 1.00968 0.91298 0.91612 0.91604 0.86259 0.86104 0.90485 0.92264 0.91314 0.94436 0.89748 0.83994 0.94757 0.90444 0.90282 0.91421 0.91811 0.91576 0.76800 0.89203 0.89235 0.92244 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 10.01 36.00 0.36 -0.19 16 2 C -0.10 -0.67 5.88 -104.63 -0.62 -1.28 16 3 C -0.12 -0.81 9.70 -39.58 -0.38 -1.19 16 4 C -0.12 -0.87 9.70 -39.58 -0.38 -1.26 16 5 C -0.06 -0.49 5.88 -104.62 -0.62 -1.11 16 6 C -0.11 -0.73 9.61 36.01 0.35 -0.39 16 7 C -0.08 -0.64 5.39 -104.63 -0.56 -1.20 16 8 C 0.10 0.66 5.20 -4.98 -0.03 0.63 16 9 N -0.68 -4.75 6.49 -115.06 -0.75 -5.50 16 10 C 0.06 0.44 5.69 -3.82 -0.02 0.42 16 11 C -0.13 -1.00 5.59 -26.73 -0.15 -1.14 16 12 C 0.12 1.38 5.67 -4.04 -0.02 1.36 16 13 N -0.74 -9.83 5.56 -60.29 -0.33 -10.17 16 14 C 0.53 10.01 7.85 -10.98 -0.09 9.92 16 15 O -0.52 -11.94 15.86 5.56 0.09 -11.85 16 16 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 19 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 22 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C -0.11 -0.80 9.33 -39.58 -0.37 -1.17 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.29 8.09 -51.93 -0.42 -0.13 16 29 H 0.06 0.27 8.09 -51.93 -0.42 -0.15 16 30 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 34 H 0.07 0.45 6.11 -51.93 -0.32 0.13 16 35 H 0.04 0.24 8.01 -51.92 -0.42 -0.17 16 36 H 0.08 0.57 6.41 -51.93 -0.33 0.23 16 37 H 0.34 2.30 8.72 -39.29 -0.34 1.96 16 38 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.40 4.11 8.47 -40.82 -0.35 3.76 16 45 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 46 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 47 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.12 0.71 8.04 -52.49 -0.42 0.29 16 LS Contribution 412.89 15.07 6.22 6.22 Total: -1.00 -34.67 412.89 -11.44 -46.11 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -8.05 Total: 0.70 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -2.11 Total: -12.53 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: -0.35 Total: -41.20 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.67 -11.44 -46.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154802402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.158 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds