Wall clock time and date at job start Sat Apr 11 2020 04:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38256 * 119.99954 * 2 1 4 4 C 1.38216 * 119.99493 * 180.02562 * 3 2 1 5 5 C 1.38251 * 120.00452 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00020 * 179.97438 * 5 4 3 7 7 C 1.38218 * 119.99953 * 0.25984 * 5 4 3 8 8 C 1.50695 * 119.99818 * 179.72322 * 7 5 4 9 9 N 1.46894 * 109.47528 * 79.99928 * 8 7 5 10 10 C 1.46899 * 111.00173 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46990 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47109 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.47274 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99957 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00257 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99718 * 180.02562 * 14 13 12 17 17 S 1.80997 * 109.46835 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99972 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00054 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00048 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00109 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00003 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47410 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47297 * 120.00066 * 22 20 18 25 25 H 1.48504 * 109.47423 * 239.99645 * 22 20 18 26 26 C 1.38217 * 119.99908 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47175 * 90.00062 * 1 2 3 28 28 H 1.09000 * 109.47425 * 210.00151 * 1 2 3 29 29 H 1.09000 * 109.47482 * 330.00207 * 1 2 3 30 30 H 1.07994 * 119.99973 * 359.97438 * 3 2 1 31 31 H 1.08009 * 119.99396 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.47152 * 90.00315 * 6 5 4 33 33 H 1.09001 * 109.46980 * 330.00416 * 6 5 4 34 34 H 1.09004 * 109.47113 * 210.00397 * 6 5 4 35 35 H 1.09008 * 109.46780 * 199.99806 * 8 7 5 36 36 H 1.09002 * 109.47273 * 319.99723 * 8 7 5 37 37 H 1.00903 * 111.00039 * 56.04349 * 9 8 7 38 38 H 1.09003 * 109.46894 * 299.99465 * 10 9 8 39 39 H 1.08993 * 109.47656 * 60.00062 * 10 9 8 40 40 H 1.09003 * 109.46689 * 299.99375 * 11 10 9 41 41 H 1.08996 * 109.47538 * 59.99372 * 11 10 9 42 42 H 1.08999 * 109.47037 * 300.00243 * 12 11 10 43 43 H 1.09001 * 109.46991 * 59.99584 * 12 11 10 44 44 H 0.97003 * 120.00043 * 359.97438 * 13 12 11 45 45 H 1.09003 * 109.46953 * 299.99670 * 16 14 13 46 46 H 1.08998 * 109.46853 * 60.00289 * 16 14 13 47 47 H 0.96995 * 119.99912 * 180.02562 * 21 20 18 48 48 H 1.07999 * 119.99712 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2716 -0.0001 -0.0005 6 6 5.7787 -0.0001 -0.0017 7 6 3.5805 -1.1971 -0.0054 8 6 4.3340 -2.5021 -0.0117 9 7 4.7881 -2.8120 1.3505 10 6 5.5277 -4.0808 1.3830 11 6 5.9827 -4.3693 2.8150 12 6 6.7526 -5.6911 2.8490 13 7 7.1888 -5.9671 4.2201 14 6 7.8890 -7.0860 4.4921 15 8 8.1576 -7.8648 3.6019 16 6 8.3372 -7.3702 5.9026 17 16 9.2480 -8.9338 5.9427 18 6 9.6400 -9.0156 7.6587 19 1 9.3193 -8.2276 8.3240 20 6 10.3619 -10.0921 8.1551 21 7 10.7533 -11.0522 7.3441 22 14 10.7781 -10.1784 9.9740 23 1 10.2282 -8.9845 10.6649 24 1 10.1845 -11.4071 10.5599 25 1 12.2531 -10.2121 10.1434 26 6 2.1980 -1.1970 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6582 2.1326 -0.0004 31 1 4.1204 2.1326 -0.0010 32 1 6.1428 0.0003 1.0257 33 1 6.1416 0.8897 -0.5162 34 1 6.1416 -0.8903 -0.5155 35 1 3.6791 -3.2980 -0.3663 36 1 5.1970 -2.4202 -0.6725 37 1 4.0120 -2.8296 1.9951 38 1 4.8807 -4.8874 1.0383 39 1 6.3990 -4.0103 0.7318 40 1 6.6296 -3.5627 3.1601 41 1 5.1113 -4.4399 3.4659 42 1 6.1054 -6.4974 2.5040 43 1 7.6240 -5.6208 2.1980 44 1 6.9736 -5.3444 4.9321 45 1 8.9847 -6.5640 6.2474 46 1 7.4658 -7.4401 6.5536 47 1 11.2575 -11.8047 7.6911 48 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154802402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:41:56 Heat of formation + Delta-G solvation = -58.465480 kcal Electronic energy + Delta-G solvation = -24391.423169 eV Core-core repulsion = 20763.301485 eV Total energy + Delta-G solvation = -3628.121684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.66618 -40.56572 -37.84434 -36.12066 -34.68291 -34.58056 -33.23005 -31.70653 -30.20714 -30.06060 -27.70621 -26.93347 -25.55800 -24.52764 -22.85515 -22.54387 -21.66816 -20.87246 -19.80799 -17.78536 -17.42785 -17.22972 -16.87792 -16.81888 -16.69618 -16.24451 -15.98757 -15.81011 -15.57853 -15.22188 -14.75236 -14.55363 -14.46465 -14.29418 -14.03271 -13.75836 -13.66089 -13.49838 -13.27565 -13.15755 -13.02080 -12.90266 -12.81517 -12.67865 -12.55313 -12.42045 -12.28661 -11.90242 -11.75434 -11.70947 -11.58347 -11.15578 -10.95937 -10.27063 -10.11175 -9.74643 -9.39588 -9.23521 -8.66665 -8.34599 -6.12739 0.43105 0.49461 1.27704 1.41871 1.47796 1.58999 1.61618 2.25879 2.29941 2.76726 2.99771 3.30076 3.35599 3.82601 3.90502 3.94933 4.01676 4.06236 4.15832 4.18709 4.23826 4.30761 4.35519 4.40412 4.51770 4.53184 4.63192 4.67180 4.70578 4.77625 4.80191 4.82597 4.88108 4.94749 4.96269 5.17284 5.18670 5.21265 5.24830 5.42505 5.44439 5.46392 5.55317 5.71856 5.79693 6.00083 6.17988 6.20406 6.41320 6.52349 7.06920 7.25413 8.74992 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.028421 B = 0.001339 C = 0.001333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.937651 B =20908.010587 C =20999.680984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.105 4.105 3 C -0.126 4.126 4 C -0.131 4.131 5 C -0.080 4.080 6 C -0.106 4.106 7 C -0.093 4.093 8 C 0.101 3.899 9 N -0.682 5.682 10 C 0.066 3.934 11 C -0.111 4.111 12 C 0.122 3.878 13 N -0.712 5.712 14 C 0.532 3.468 15 O -0.568 6.568 16 C -0.130 4.130 17 S -0.154 6.154 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.122 4.122 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.083 0.917 37 H 0.345 0.655 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.417 0.583 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.271 0.729 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.219 28.132 -14.679 37.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.105 4.105 3 C -0.145 4.145 4 C -0.149 4.149 5 C -0.081 4.081 6 C -0.163 4.163 7 C -0.093 4.093 8 C -0.027 4.027 9 N -0.313 5.313 10 C -0.064 4.064 11 C -0.149 4.149 12 C -0.002 4.002 13 N -0.367 5.367 14 C 0.317 3.683 15 O -0.447 6.447 16 C -0.281 4.281 17 S 0.073 5.927 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.140 4.140 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.163 0.837 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.254 0.746 45 H 0.128 0.872 46 H 0.129 0.871 47 H 0.080 0.920 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.130 27.085 -16.253 36.928 hybrid contribution -0.656 0.008 1.965 2.072 sum -19.785 27.092 -14.288 36.464 Atomic orbital electron populations 1.20804 0.89927 1.03363 1.02808 1.20156 0.97157 0.93069 1.00121 1.21293 0.94367 0.98229 1.00569 1.21284 0.94546 0.98055 1.01002 1.19968 0.96846 0.92589 0.98682 1.20748 0.90395 1.02558 1.02590 1.19726 0.93387 0.94709 1.01494 1.20828 0.98114 0.92753 0.91019 1.60438 1.30174 1.33412 1.07318 1.21790 0.98316 0.89798 0.96495 1.21583 1.00642 0.95069 0.97649 1.21312 0.98587 0.97838 0.82483 1.45744 1.56073 1.23075 1.11764 1.20092 0.77357 0.81232 0.89588 1.90689 1.56785 1.48460 1.48726 1.23378 1.04576 1.03121 0.97006 1.85583 1.69679 1.24218 1.13185 1.23247 1.41382 1.11297 0.93459 0.89866 1.26129 0.94547 0.94024 1.04417 1.70191 1.36585 1.10481 1.37573 0.84896 0.78087 0.78759 0.76136 1.18002 1.19927 1.19942 1.21126 0.93551 0.98201 1.01156 0.90683 0.91190 0.90824 0.84735 0.84899 0.91056 0.91418 0.91446 0.94105 0.89853 0.83694 0.94652 0.90698 0.89797 0.90139 0.92564 0.92470 0.74590 0.87159 0.87143 0.91992 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 71.23 0.71 -0.22 16 2 C -0.11 -1.35 5.88 -19.87 -0.12 -1.47 16 3 C -0.13 -1.61 9.70 22.27 0.22 -1.40 16 4 C -0.13 -1.77 9.70 22.27 0.22 -1.55 16 5 C -0.08 -1.17 5.88 -19.87 -0.12 -1.29 16 6 C -0.11 -1.32 9.61 71.24 0.68 -0.64 16 7 C -0.09 -1.32 5.39 -19.87 -0.11 -1.43 16 8 C 0.10 1.27 5.20 85.56 0.44 1.71 16 9 N -0.68 -8.46 6.49 -517.94 -3.36 -11.82 16 10 C 0.07 0.83 5.69 86.31 0.49 1.32 16 11 C -0.11 -1.47 5.59 30.60 0.17 -1.30 16 12 C 0.12 2.57 5.67 86.38 0.49 3.06 16 13 N -0.71 -17.53 5.56 -463.06 -2.57 -20.11 16 14 C 0.53 19.64 7.85 87.66 0.69 20.33 16 15 O -0.57 -26.59 15.86 -3.04 -0.05 -26.64 16 16 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 17 S -0.15 -8.59 20.57 -56.49 -1.16 -9.76 16 18 C -0.55 -31.28 9.50 67.95 0.65 -30.63 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.77 5.49 84.86 0.47 1.24 16 21 N -0.91 -56.20 13.22 21.65 0.29 -55.91 16 22 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 23 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 C -0.12 -1.65 9.33 22.27 0.21 -1.45 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.51 8.09 -2.39 -0.02 0.49 16 29 H 0.07 0.49 8.09 -2.39 -0.02 0.47 16 30 H 0.13 1.19 8.06 -2.91 -0.02 1.16 16 31 H 0.13 1.35 8.06 -2.91 -0.02 1.32 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 34 H 0.07 0.83 6.11 -2.38 -0.01 0.82 16 35 H 0.04 0.48 8.01 -2.38 -0.02 0.46 16 36 H 0.08 1.06 6.41 -2.39 -0.02 1.04 16 37 H 0.34 4.01 8.72 -89.69 -0.78 3.23 16 38 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 43 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.42 7.28 8.47 -92.71 -0.79 6.49 16 45 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 46 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 47 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 48 H 0.13 1.39 8.04 -2.91 -0.02 1.37 16 Total: -1.00 -76.74 412.89 0.09 -76.65 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -0.61 Total: 20.33 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 5.53 Total: -18.40 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -5.65 Total: -87.84 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.76 kcal Total: -76.74 0.09 -76.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154802402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.185 kcal (2) G-P(sol) polarization free energy of solvation -76.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds