Wall clock time and date at job start Sat Apr 11 2020 04:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38261 * 119.99863 * 2 1 4 4 C 1.38207 * 119.99740 * 179.76275 * 3 2 1 5 5 C 1.38253 * 120.00293 * 0.53367 * 4 3 2 6 6 C 1.50704 * 120.00302 * 179.74019 * 5 4 3 7 7 N 1.46898 * 109.47041 * 259.72688 * 6 5 4 8 8 C 1.46906 * 110.99888 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47378 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47473 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.47368 * 179.97438 * 10 9 8 12 12 C 1.34779 * 120.00165 * 180.02562 * 11 10 9 13 13 O 1.21276 * 119.99563 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00033 * 180.02562 * 12 11 10 15 15 S 1.81000 * 109.46881 * 179.97438 * 14 12 11 16 16 C 1.76205 * 99.99610 * 180.02562 * 15 14 12 17 17 H 1.07991 * 120.00386 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99527 * 180.02562 * 16 15 14 19 19 N 1.31632 * 120.00684 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99778 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47497 * 59.99968 * 20 18 16 22 22 H 1.48508 * 109.47253 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46831 * 299.99623 * 20 18 16 24 24 C 1.38210 * 119.99982 * 359.46569 * 5 4 3 25 25 C 1.50707 * 120.00368 * 180.27450 * 24 5 4 26 26 C 1.38214 * 119.99987 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47834 * 269.97364 * 1 2 3 28 28 H 1.08995 * 109.47249 * 29.98458 * 1 2 3 29 29 H 1.09002 * 109.47094 * 149.97808 * 1 2 3 30 30 H 1.08003 * 119.99673 * 0.02562 * 3 2 1 31 31 H 1.08002 * 119.99902 * 180.27540 * 4 3 2 32 32 H 1.08997 * 109.46924 * 139.72599 * 6 5 4 33 33 H 1.08995 * 109.46962 * 19.72754 * 6 5 4 34 34 H 1.00901 * 111.00121 * 56.04537 * 7 6 5 35 35 H 1.09004 * 109.47040 * 299.99934 * 8 7 6 36 36 H 1.09000 * 109.47033 * 59.99886 * 8 7 6 37 37 H 1.09004 * 109.46862 * 299.99897 * 9 8 7 38 38 H 1.09004 * 109.46998 * 59.99419 * 9 8 7 39 39 H 1.08996 * 109.47261 * 300.00171 * 10 9 8 40 40 H 1.09000 * 109.46870 * 59.99782 * 10 9 8 41 41 H 0.97003 * 119.99531 * 359.97438 * 11 10 9 42 42 H 1.09004 * 109.47103 * 299.99758 * 14 12 11 43 43 H 1.09000 * 109.47247 * 59.99881 * 14 12 11 44 44 H 0.96996 * 120.00685 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.46662 * 89.99949 * 25 24 5 46 46 H 1.08999 * 109.47358 * 210.00339 * 25 24 5 47 47 H 1.09000 * 109.46980 * 330.00644 * 25 24 5 48 48 H 1.07995 * 120.00392 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0050 5 6 4.2716 0.0001 -0.0012 6 6 5.7787 0.0001 -0.0018 7 7 6.2679 -0.2401 -1.3659 8 6 7.7364 -0.2463 -1.4051 9 6 8.2073 -0.4981 -2.8388 10 6 9.7367 -0.5039 -2.8798 11 7 10.1876 -0.7457 -4.2525 12 6 11.5055 -0.7940 -4.5303 13 8 12.3182 -0.6368 -3.6439 14 6 11.9693 -1.0421 -5.9426 15 16 13.7786 -1.0491 -5.9909 16 6 14.0376 -1.3501 -7.7076 17 1 13.1919 -1.4673 -8.3689 18 6 15.3286 -1.4377 -8.2097 19 7 16.3595 -1.2954 -7.4037 20 14 15.6032 -1.7562 -10.0298 21 1 14.9833 -0.6642 -10.8225 22 1 17.0609 -1.8055 -10.3093 23 1 14.9838 -3.0529 -10.4043 24 6 3.5807 -1.1969 -0.0012 25 6 4.3342 -2.5020 -0.0017 26 6 2.1980 -1.1970 -0.0005 27 1 -0.3634 -0.0005 1.0276 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6581 2.1327 0.0004 31 1 4.1203 2.1327 0.0095 32 1 6.1422 -0.7872 0.6585 33 1 6.1421 0.9657 0.3498 34 1 5.8921 0.4399 -2.0098 35 1 8.1130 0.7179 -1.0634 36 1 8.1139 -1.0351 -0.7544 37 1 7.8306 -1.4621 -3.1809 38 1 7.8297 0.2910 -3.4891 39 1 10.1130 0.4602 -2.5378 40 1 10.1145 -1.2928 -2.2294 41 1 9.5375 -0.8717 -4.9614 42 1 11.5926 -2.0061 -6.2847 43 1 11.5919 -0.2529 -6.5929 44 1 17.2617 -1.3570 -7.7545 45 1 4.5162 -2.8168 1.0259 46 1 3.7450 -3.2616 -0.5155 47 1 5.2865 -2.3715 -0.5158 48 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154814624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:42:17 Heat of formation + Delta-G solvation = -36.292441 kcal Electronic energy + Delta-G solvation = -24345.646987 eV Core-core repulsion = 20718.486798 eV Total energy + Delta-G solvation = -3627.160189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.12571 -39.16682 -37.19325 -35.17055 -33.77451 -32.56247 -32.41740 -31.37139 -29.28831 -27.94284 -27.39118 -25.52635 -24.94220 -23.40039 -22.41410 -21.80138 -20.42002 -20.22132 -17.81645 -16.95651 -16.36542 -16.17927 -16.05180 -15.91514 -15.22780 -15.12644 -14.94006 -14.79266 -14.39483 -14.18568 -13.90819 -13.67278 -13.51197 -13.43794 -13.10173 -12.98810 -12.70990 -12.59196 -12.49307 -12.30514 -12.11590 -11.84986 -11.75387 -11.70420 -11.31180 -11.13035 -11.09270 -11.03483 -11.02566 -10.75649 -9.81389 -9.39224 -9.12271 -9.05313 -8.93922 -8.86059 -8.73028 -8.22817 -6.48873 -6.20407 -3.91111 0.92712 1.04470 3.03104 3.12131 3.24398 3.25228 3.28945 3.33640 3.69387 3.97647 4.21705 4.36179 4.38979 4.53131 4.59336 4.71286 4.72959 4.84898 4.90831 4.99815 5.08160 5.14411 5.14616 5.16905 5.22365 5.26151 5.29176 5.35200 5.37170 5.42010 5.46000 5.53834 5.59849 5.67184 5.77378 5.87395 5.93530 5.94503 5.99935 6.07686 6.15585 6.22103 6.31951 6.53358 6.64872 6.68643 6.94151 7.60326 7.73188 8.36139 8.63501 9.24707 10.86994 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.030844 B = 0.001321 C = 0.001303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.573420 B =21185.058829 C =21485.166422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.082 4.082 3 C -0.130 4.130 4 C -0.106 4.106 5 C -0.094 4.094 6 C 0.099 3.901 7 N -0.683 5.683 8 C 0.061 3.939 9 C -0.128 4.128 10 C 0.123 3.877 11 N -0.739 5.739 12 C 0.531 3.469 13 O -0.519 6.519 14 C -0.154 4.154 15 S -0.061 6.061 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.054 4.054 25 C -0.122 4.122 26 C -0.126 4.126 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.343 0.657 35 H 0.035 0.965 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.398 0.602 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.269 0.731 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.087 0.913 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.337 2.670 16.059 36.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.082 4.082 3 C -0.148 4.148 4 C -0.125 4.125 5 C -0.095 4.095 6 C -0.030 4.030 7 N -0.314 5.314 8 C -0.068 4.068 9 C -0.166 4.166 10 C -0.002 4.002 11 N -0.394 5.394 12 C 0.317 3.683 13 O -0.393 6.393 14 C -0.304 4.304 15 S 0.166 5.834 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.054 4.054 25 C -0.179 4.179 26 C -0.144 4.144 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.161 0.839 35 H 0.053 0.947 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.106 0.894 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -30.796 2.250 17.631 35.557 hybrid contribution -0.970 0.599 -2.423 2.678 sum -31.767 2.849 15.208 35.334 Atomic orbital electron populations 1.20799 0.91302 1.02798 1.02286 1.19919 0.96000 0.93197 0.99130 1.20960 0.94094 0.97483 1.02265 1.21036 0.94263 0.97357 0.99805 1.19618 0.94916 0.92727 1.02192 1.20840 0.90631 1.00455 0.91045 1.60477 1.07768 1.56081 1.07088 1.21875 0.87215 1.00725 0.97030 1.21734 0.94564 1.03427 0.96893 1.21178 0.93137 1.01757 0.84138 1.45986 1.07450 1.75822 1.10129 1.20312 0.81592 0.75633 0.90770 1.90698 1.52973 1.47548 1.48069 1.23534 1.07083 1.04632 0.95175 1.85392 0.91861 1.94115 1.12034 1.22834 0.95109 1.57037 0.93493 0.90971 1.24984 0.94935 0.94649 0.98939 1.70006 0.98663 1.46438 1.35223 0.86230 0.77328 0.78932 0.83037 1.19942 1.20802 1.19935 1.19764 0.93295 0.95133 0.97211 1.20910 1.01430 0.93484 1.02072 1.20951 0.93608 0.97540 1.02327 0.91208 0.91564 0.91539 0.86258 0.86315 0.89919 0.94395 0.83933 0.94715 0.90427 0.90278 0.91407 0.91806 0.91574 0.76801 0.89202 0.89238 0.92129 0.91604 0.91851 0.89433 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 10.01 36.00 0.36 -0.19 16 2 C -0.08 -0.58 5.88 -104.62 -0.62 -1.19 16 3 C -0.13 -0.91 9.70 -39.58 -0.38 -1.29 16 4 C -0.11 -0.76 9.67 -39.59 -0.38 -1.14 16 5 C -0.09 -0.71 5.39 -104.62 -0.56 -1.28 16 6 C 0.10 0.67 4.94 -4.97 -0.02 0.64 16 7 N -0.68 -4.72 5.83 -115.06 -0.67 -5.39 16 8 C 0.06 0.43 5.68 -3.82 -0.02 0.41 16 9 C -0.13 -0.99 5.59 -26.74 -0.15 -1.14 16 10 C 0.12 1.38 5.67 -4.04 -0.02 1.36 16 11 N -0.74 -9.83 5.56 -60.30 -0.33 -10.16 16 12 C 0.53 10.01 7.85 -10.99 -0.09 9.92 16 13 O -0.52 -11.93 15.86 5.56 0.09 -11.84 16 14 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 16 C -0.54 -15.37 9.50 30.94 0.29 -15.07 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 20 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.05 -0.42 5.88 -104.62 -0.62 -1.03 16 25 C -0.12 -0.82 9.26 36.01 0.33 -0.49 16 26 C -0.13 -0.94 9.36 -39.58 -0.37 -1.31 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 29 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 30 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 31 H 0.12 0.68 8.04 -52.49 -0.42 0.26 16 32 H 0.08 0.56 7.28 -51.93 -0.38 0.18 16 33 H 0.04 0.24 8.00 -51.93 -0.42 -0.17 16 34 H 0.34 2.28 8.72 -39.29 -0.34 1.94 16 35 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.40 4.11 8.47 -40.82 -0.35 3.76 16 42 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 47 H 0.09 0.65 6.35 -51.93 -0.33 0.32 16 48 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 412.72 15.07 6.22 6.22 Total: -1.00 -34.62 412.72 -11.43 -46.05 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -8.11 Total: 0.79 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -2.12 Total: -12.67 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: -0.27 Total: -41.10 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.62 -11.43 -46.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.761 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds