Wall clock time and date at job start Sat Apr 11 2020 04:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00010 * 2 1 4 4 C 1.38211 * 120.00113 * 180.25649 * 3 2 1 5 5 C 1.38261 * 120.00022 * 359.78451 * 4 3 2 6 6 C 1.38214 * 119.99661 * 359.95720 * 5 4 3 7 7 C 1.50703 * 119.99514 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.46415 * 200.01930 * 7 6 5 9 9 C 1.52998 * 109.47403 * 80.02433 * 7 6 5 10 10 N 1.46900 * 109.47042 * 320.01548 * 7 6 5 11 11 C 1.46902 * 111.00166 * 205.00180 * 10 7 6 12 12 C 1.52996 * 109.47219 * 180.02562 * 11 10 7 13 13 C 1.53002 * 109.46847 * 180.02562 * 12 11 10 14 14 N 1.46504 * 109.47093 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00201 * 180.02562 * 14 13 12 16 16 O 1.21281 * 119.99797 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.99857 * 180.02562 * 15 14 13 18 18 S 1.81008 * 109.46904 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99785 * 179.97438 * 18 17 15 20 20 H 1.07996 * 119.99936 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99640 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00227 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99699 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47008 * 89.99771 * 23 21 19 25 25 H 1.48498 * 109.47098 * 209.99425 * 23 21 19 26 26 H 1.48499 * 109.47277 * 329.99648 * 23 21 19 27 27 C 1.38211 * 120.00162 * 179.75882 * 2 1 3 28 28 H 1.09001 * 109.47236 * 270.23378 * 1 2 3 29 29 H 1.09000 * 109.47285 * 30.23570 * 1 2 3 30 30 H 1.08993 * 109.47149 * 150.24066 * 1 2 3 31 31 H 1.08004 * 120.00386 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.00363 * 179.76462 * 4 3 2 33 33 H 1.07997 * 119.99874 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.47004 * 59.99329 * 9 7 6 35 35 H 1.08998 * 109.46991 * 179.97438 * 9 7 6 36 36 H 1.09004 * 109.46740 * 299.99700 * 9 7 6 37 37 H 1.00901 * 110.99687 * 81.05618 * 10 7 6 38 38 H 1.08997 * 109.46980 * 300.00862 * 11 10 7 39 39 H 1.09003 * 109.46798 * 60.00187 * 11 10 7 40 40 H 1.08998 * 109.46942 * 299.99790 * 12 11 10 41 41 H 1.08996 * 109.47204 * 60.00550 * 12 11 10 42 42 H 1.09002 * 109.47408 * 300.00035 * 13 12 11 43 43 H 1.09008 * 109.47134 * 60.00422 * 13 12 11 44 44 H 0.97001 * 119.99756 * 0.02562 * 14 13 12 45 45 H 1.09002 * 109.46875 * 299.99711 * 17 15 14 46 46 H 1.08991 * 109.47307 * 59.99651 * 17 15 14 47 47 H 0.96996 * 120.00154 * 180.02562 * 22 21 19 48 48 H 1.08002 * 120.00200 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0054 5 6 4.2717 0.0000 -0.0062 6 6 3.5806 -1.1969 -0.0008 7 6 4.3342 -2.5020 -0.0012 8 1 3.6781 -3.3002 -0.3486 9 6 4.8115 -2.8158 1.4182 10 7 5.4943 -2.3973 -0.8962 11 6 5.8979 -3.7199 -1.3919 12 6 7.1065 -3.5704 -2.3180 13 6 7.5264 -4.9480 -2.8348 14 7 8.6834 -4.8048 -3.7221 15 6 9.2292 -5.8938 -4.2989 16 8 8.7622 -6.9923 -4.0837 17 6 10.4196 -5.7466 -5.2111 18 16 10.9154 -7.3761 -5.8238 19 6 12.2846 -6.9193 -6.8344 20 1 12.5724 -5.8817 -6.9169 21 6 12.9931 -7.8931 -7.5245 22 7 12.6425 -9.1578 -7.4235 23 14 14.4451 -7.4089 -8.5953 24 1 15.6884 -7.4323 -7.7835 25 1 14.5713 -8.3686 -9.7215 26 1 14.2300 -6.0412 -9.1321 27 6 2.1980 -1.1969 0.0050 28 1 -0.3634 0.0042 1.0277 29 1 -0.3634 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5101 31 1 1.6583 2.1327 0.0004 32 1 4.1204 2.1327 -0.0092 33 1 5.3516 0.0001 -0.0108 34 1 3.9506 -2.8934 2.0821 35 1 5.3561 -3.7599 1.4179 36 1 5.4675 -2.0175 1.7656 37 1 6.2638 -1.9328 -0.4377 38 1 6.1630 -4.3584 -0.5492 39 1 5.0713 -4.1693 -1.9423 40 1 6.8417 -2.9319 -3.1607 41 1 7.9329 -3.1213 -1.7672 42 1 7.7911 -5.5870 -1.9923 43 1 6.6999 -5.3968 -3.3858 44 1 9.0566 -3.9262 -3.8944 45 1 10.1550 -5.1072 -6.0533 46 1 11.2462 -5.2982 -4.6602 47 1 13.1379 -9.8384 -7.9055 48 1 1.6581 -2.1323 0.0086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154814865.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:42:20 Heat of formation + Delta-G solvation = -33.221036 kcal Electronic energy + Delta-G solvation = -24454.699198 eV Core-core repulsion = 20827.672196 eV Total energy + Delta-G solvation = -3627.027003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.03509 -39.16532 -37.58859 -35.32965 -33.30588 -32.51523 -32.41815 -30.83836 -29.49575 -28.37763 -27.24737 -25.52488 -24.84075 -23.43078 -22.50343 -21.73077 -20.29510 -20.18952 -17.81593 -17.07710 -16.42022 -16.24246 -16.08624 -15.68772 -15.62003 -15.09124 -14.79613 -14.68748 -14.44373 -14.17713 -13.92273 -13.87103 -13.46148 -13.40386 -13.11315 -12.84584 -12.74285 -12.63066 -12.56356 -12.26751 -12.04105 -11.86063 -11.78714 -11.68620 -11.26488 -11.12965 -11.09588 -11.05187 -11.01491 -10.75023 -9.80643 -9.39189 -9.15132 -9.06182 -8.92155 -8.87059 -8.79366 -8.22494 -6.48986 -6.20769 -3.91290 1.03900 1.07624 3.03178 3.12103 3.23061 3.28096 3.31745 3.39156 3.63972 3.87744 4.21404 4.30282 4.45561 4.55843 4.65216 4.69497 4.76864 4.82513 4.85077 4.91483 4.99102 5.10102 5.14399 5.15316 5.19177 5.21888 5.22671 5.37857 5.38329 5.43942 5.46335 5.53344 5.63439 5.67718 5.72093 5.81192 5.87685 5.94772 5.99706 6.15556 6.16240 6.21235 6.27646 6.59032 6.66185 6.71190 6.93119 7.60477 7.73183 8.36165 8.63489 9.24551 10.86705 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.029990 B = 0.001358 C = 0.001337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.418205 B =20612.635440 C =20930.176940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.126 4.126 4 C -0.117 4.117 5 C -0.104 4.104 6 C -0.062 4.062 7 C 0.122 3.878 8 H 0.087 0.913 9 C -0.178 4.178 10 N -0.681 5.681 11 C 0.062 3.938 12 C -0.128 4.128 13 C 0.123 3.877 14 N -0.739 5.739 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C -0.118 4.118 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.341 0.659 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.398 0.602 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.268 0.732 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.356 21.599 18.868 35.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.145 4.145 4 C -0.135 4.135 5 C -0.123 4.123 6 C -0.062 4.062 7 C 0.012 3.988 8 H 0.105 0.895 9 C -0.237 4.237 10 N -0.311 5.311 11 C -0.067 4.067 12 C -0.166 4.166 13 C -0.002 4.002 14 N -0.394 5.394 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.136 4.136 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.160 0.840 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.232 0.768 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.488 19.692 18.610 35.211 hybrid contribution 2.108 1.684 -0.221 2.707 sum -20.380 21.376 18.389 34.791 Atomic orbital electron populations 1.20789 0.91299 1.02809 1.02233 1.19863 0.95968 0.93117 0.99740 1.21014 0.94349 0.97414 1.01683 1.21133 0.94276 0.98052 1.00067 1.20872 0.99810 0.91732 0.99862 1.19718 0.93184 0.94580 0.98740 1.20446 0.92532 0.94669 0.91165 0.89478 1.22483 1.02098 1.01918 0.97219 1.60559 1.09081 1.20439 1.41065 1.21886 0.97670 0.89772 0.97419 1.21736 0.97607 0.97091 1.00213 1.21180 0.88746 0.96517 0.93759 1.45984 1.33381 1.10042 1.49968 1.20313 0.84115 0.83938 0.79944 1.90700 1.62122 1.25607 1.60870 1.23531 0.97797 1.08236 1.00842 1.85396 1.38687 1.00565 1.58799 1.22874 1.16614 0.96194 1.32714 0.90923 1.24988 0.97698 0.94461 0.96400 1.70017 1.39523 0.99958 1.40815 0.86169 0.81415 0.78425 0.79495 1.20276 1.20744 1.19694 1.20867 0.93443 0.97584 1.01722 0.91278 0.91585 0.91538 0.86378 0.86214 0.86255 0.91731 0.92077 0.92140 0.84015 0.94611 0.90457 0.90277 0.91407 0.91804 0.91580 0.76805 0.89200 0.89239 0.92189 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.01 36.00 0.36 -0.22 16 2 C -0.09 -0.62 5.88 -104.63 -0.62 -1.24 16 3 C -0.13 -0.90 9.70 -39.58 -0.38 -1.28 16 4 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 5 C -0.10 -0.78 9.32 -39.58 -0.37 -1.15 16 6 C -0.06 -0.47 4.96 -104.62 -0.52 -0.99 16 7 C 0.12 0.81 2.79 -68.86 -0.19 0.61 16 8 H 0.09 0.59 7.66 -51.93 -0.40 0.19 16 9 C -0.18 -1.01 9.14 37.16 0.34 -0.68 16 10 N -0.68 -4.67 5.70 -107.95 -0.62 -5.29 16 11 C 0.06 0.45 5.48 -3.83 -0.02 0.43 16 12 C -0.13 -1.00 5.59 -26.73 -0.15 -1.15 16 13 C 0.12 1.39 5.67 -4.04 -0.02 1.36 16 14 N -0.74 -9.85 5.56 -60.29 -0.33 -10.19 16 15 C 0.53 10.02 7.85 -10.99 -0.09 9.94 16 16 O -0.52 -11.96 15.86 5.56 0.09 -11.87 16 17 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 23 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 27 C -0.12 -0.88 9.33 -39.58 -0.37 -1.25 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 30 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 32 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 33 H 0.12 0.76 7.25 -52.49 -0.38 0.38 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.35 7.45 -51.93 -0.39 -0.04 16 36 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 37 H 0.34 2.02 7.82 -39.29 -0.31 1.72 16 38 H 0.04 0.25 7.44 -51.93 -0.39 -0.14 16 39 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 44 H 0.40 4.11 8.47 -40.82 -0.35 3.76 16 45 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 46 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 47 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.12 0.73 8.04 -52.49 -0.42 0.31 16 LS Contribution 412.56 15.07 6.22 6.22 Total: -1.00 -34.89 412.56 -11.23 -46.12 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -8.08 Total: 0.78 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.01 Total: -12.78 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -0.22 Total: -41.03 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.89 -11.23 -46.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814865.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.903 kcal (2) G-P(sol) polarization free energy of solvation -34.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds