Wall clock time and date at job start Sat Apr 11 2020 04:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48505 * 109.46993 * 239.99525 * 3 2 1 5 5 H 1.48497 * 109.47442 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47274 * 119.99475 * 3 2 1 7 7 C 1.38952 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00009 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00242 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00222 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99814 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99987 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47350 * 179.97438 * 12 10 9 14 14 C 1.46897 * 111.00289 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47112 * 185.45180 * 14 13 12 16 16 C 1.53006 * 115.54752 * 295.11166 * 15 14 13 17 17 C 1.53000 * 109.46744 * 279.63383 * 16 15 14 18 18 N 1.46503 * 109.46518 * 175.50512 * 17 16 15 19 19 C 1.34781 * 119.99842 * 180.02562 * 18 17 16 20 20 O 1.21558 * 119.99599 * 0.02562 * 19 18 17 21 21 C 1.47867 * 120.00310 * 180.27633 * 19 18 17 22 22 N 1.34552 * 126.04363 * 359.41506 * 21 19 18 23 23 C 1.30872 * 107.26826 * 179.83428 * 22 21 19 24 24 N 1.34587 * 107.62144 * 0.42447 * 23 22 21 25 25 H 0.97005 * 125.74631 * 179.72992 * 24 23 22 26 26 N 1.28848 * 108.50782 * 359.72611 * 24 23 22 27 27 C 1.52998 * 117.51666 * 80.81020 * 15 14 13 28 28 C 1.52998 * 117.49877 * 149.43997 * 15 14 13 29 29 H 0.97000 * 119.99978 * 0.02562 * 1 2 3 30 30 H 0.97007 * 120.00038 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46961 * 59.99635 * 12 10 9 32 32 H 1.09003 * 109.47275 * 299.99949 * 12 10 9 33 33 H 1.00900 * 110.99999 * 303.95968 * 13 12 10 34 34 H 1.09000 * 109.47042 * 65.45183 * 14 13 12 35 35 H 1.08996 * 109.47219 * 305.44926 * 14 13 12 36 36 H 1.08997 * 109.46843 * 159.63661 * 16 15 14 37 37 H 1.08999 * 109.47087 * 39.63710 * 16 15 14 38 38 H 1.09003 * 109.47137 * 55.51149 * 17 16 15 39 39 H 1.08993 * 109.47468 * 295.50489 * 17 16 15 40 40 H 0.96998 * 120.00726 * 0.02562 * 18 17 16 41 41 H 1.07991 * 126.19115 * 180.11619 * 23 22 21 42 42 H 1.08999 * 117.50032 * 214.96813 * 27 15 14 43 43 H 1.09000 * 117.50028 * 359.97438 * 27 15 14 44 44 H 1.08997 * 117.49974 * 359.97438 * 28 15 14 45 45 H 1.09000 * 117.49773 * 144.99448 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0010 13 7 2.1983 -5.9795 0.0017 14 6 1.4980 -7.2708 0.0018 15 6 2.5171 -8.4037 0.1396 16 6 3.4958 -8.5564 -1.0266 17 6 2.8137 -9.3117 -2.1690 18 7 3.7126 -9.3643 -3.3247 19 6 3.3209 -9.9845 -4.4554 20 8 2.2216 -10.4997 -4.5164 21 6 4.2304 -10.0430 -5.6198 22 7 5.4647 -9.5116 -5.6878 23 6 5.9389 -9.7815 -6.8773 24 7 4.9952 -10.4702 -7.5455 25 1 5.0711 -10.7994 -8.4548 26 7 3.9740 -10.6186 -6.7740 27 6 3.0361 -8.7207 1.5436 28 6 2.0636 -9.6790 0.8530 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 -0.0002 31 1 0.6181 -4.9208 -0.8897 32 1 0.6161 -4.9205 0.8903 33 1 2.8338 -5.9125 -0.7791 34 1 0.9499 -7.3869 -0.9332 35 1 0.8005 -7.3058 0.8386 36 1 4.3721 -9.1133 -0.6949 37 1 3.8024 -7.5702 -1.3750 38 1 1.8942 -8.7968 -2.4471 39 1 2.5787 -10.3255 -1.8451 40 1 4.5897 -8.9529 -3.2762 41 1 6.9097 -9.4982 -7.2561 42 1 4.0747 -9.0381 1.6364 43 1 2.6519 -8.1219 2.3693 44 1 1.0394 -9.7108 1.2245 45 1 2.4624 -10.6268 0.4915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167483443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:42:52 Heat of formation + Delta-G solvation = 40.319907 kcal Electronic energy + Delta-G solvation = -27571.774263 eV Core-core repulsion = 23433.935771 eV Total energy + Delta-G solvation = -4137.838492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.90814 -39.80363 -38.80318 -38.00909 -35.22283 -34.59238 -33.96128 -33.67987 -31.87752 -31.18463 -30.39362 -27.97135 -25.61170 -24.97887 -23.41096 -23.30477 -23.13709 -22.06782 -20.84107 -19.58976 -19.29298 -18.71315 -17.84338 -17.34218 -16.82030 -16.52021 -16.30468 -15.66329 -15.54779 -15.23237 -15.03521 -14.53145 -14.42134 -14.23871 -13.98461 -13.60734 -13.45896 -13.10108 -12.71482 -12.63904 -12.31080 -11.92790 -11.69372 -11.55501 -11.49138 -11.40910 -11.18877 -11.02962 -10.99743 -10.99041 -10.53615 -10.42314 -10.21084 -10.20710 -10.16469 -9.80015 -9.46924 -9.31503 -8.40804 -7.97928 -7.91501 -6.38609 -3.79336 0.97402 1.65659 2.06124 2.78700 3.05431 3.22171 3.27536 3.31965 3.63104 3.69352 3.95109 4.16815 4.20644 4.36231 4.43339 4.63373 4.71630 4.79656 4.99978 5.14586 5.21444 5.23336 5.30834 5.40483 5.50515 5.60858 5.63676 5.69832 5.74981 5.84693 5.92915 5.93900 6.01304 6.03379 6.12828 6.14883 6.21233 6.22895 6.30913 7.11897 7.27987 7.53764 7.57823 7.72745 7.88868 8.09472 8.64859 9.20946 9.57936 10.09623 10.79147 Molecular weight = 336.17amu Principal moments of inertia in cm(-1) A = 0.010086 B = 0.002149 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.354968 B =13024.788653 C =15006.763591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.442 3.558 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.664 5.664 14 C 0.094 3.906 15 C -0.115 4.115 16 C -0.095 4.095 17 C 0.123 3.877 18 N -0.707 5.707 19 C 0.614 3.386 20 O -0.518 6.518 21 C 0.147 3.853 22 N -0.484 5.484 23 C 0.201 3.799 24 N -0.401 5.401 25 H 0.453 0.547 26 N -0.249 5.249 27 C -0.152 4.152 28 C -0.176 4.176 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.348 0.652 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.412 0.588 41 H 0.232 0.768 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.486 -23.116 -10.733 26.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.467 6.467 12 C -0.083 4.083 13 N -0.297 5.297 14 C -0.035 4.035 15 C -0.116 4.116 16 C -0.133 4.133 17 C 0.000 4.000 18 N -0.360 5.360 19 C 0.395 3.605 20 O -0.390 6.390 21 C -0.133 4.133 22 N -0.210 5.210 23 C -0.097 4.097 24 N -0.124 5.124 25 H 0.300 0.700 26 N -0.088 5.088 27 C -0.190 4.190 28 C -0.214 4.214 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.167 0.833 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.248 0.752 41 H 0.248 0.752 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.951 -23.382 -9.788 26.566 hybrid contribution 0.233 0.955 -1.728 1.988 sum 8.184 -22.427 -11.516 26.506 Atomic orbital electron populations 1.69607 1.05922 1.28217 1.50642 1.25263 0.95639 0.99709 0.97398 0.85917 0.78748 0.80490 0.79051 1.19950 1.21012 1.19883 1.19648 0.93328 0.82265 1.47603 0.87994 1.41863 1.09199 1.04604 1.64466 1.19817 0.88389 0.84721 0.84361 1.90517 1.13752 1.87082 1.55345 1.21673 0.94410 0.91039 1.01144 1.60004 1.18676 0.99647 1.51341 1.21454 0.93951 0.87831 1.00271 1.21186 1.00250 0.96574 0.93577 1.21303 0.97423 1.01345 0.93185 1.21475 0.93085 1.01383 0.84060 1.45709 1.20861 1.56752 1.12666 1.16246 0.84472 0.79129 0.80656 1.90852 1.20340 1.45730 1.82102 1.23839 0.93079 1.01639 0.94779 1.71315 1.08498 1.22448 1.18757 1.26653 0.98145 0.95981 0.88944 1.45282 1.10563 1.40481 1.16069 0.69983 1.74379 1.11128 1.20487 1.02841 1.22946 0.98973 1.01905 0.95127 1.23051 1.00266 0.93676 1.04407 0.91853 0.77465 0.93981 0.89647 0.83251 0.95045 0.90874 0.90806 0.90028 0.90907 0.90928 0.75225 0.75210 0.88990 0.88341 0.88763 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.43 9.68 -14.94 -0.14 -8.57 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.51 5.29 -10.97 -0.06 -14.57 16 10 C 0.44 10.56 7.82 -10.99 -0.09 10.48 16 11 O -0.58 -15.93 15.78 5.55 0.09 -15.85 16 12 C 0.05 0.90 6.16 -4.98 -0.03 0.87 16 13 N -0.66 -10.70 6.09 -115.06 -0.70 -11.40 16 14 C 0.09 1.17 5.55 -3.82 -0.02 1.15 16 15 C -0.11 -1.21 1.72 -154.50 -0.27 -1.47 16 16 C -0.09 -0.91 5.24 -26.73 -0.14 -1.05 16 17 C 0.12 1.24 5.51 -4.04 -0.02 1.22 16 18 N -0.71 -7.40 5.55 -61.24 -0.34 -7.74 16 19 C 0.61 7.95 7.83 -12.32 -0.10 7.86 16 20 O -0.52 -8.36 17.09 5.31 0.09 -8.27 16 21 C 0.15 1.70 7.96 -156.35 -1.24 0.45 16 22 N -0.48 -4.46 11.09 -12.37 -0.14 -4.60 16 23 C 0.20 0.97 13.14 -90.48 -1.19 -0.21 16 24 N -0.40 -2.06 6.93 29.56 0.20 -1.86 16 25 H 0.45 0.29 8.96 -190.21 -1.71 -1.41 16 26 N -0.25 -2.61 12.30 32.07 0.39 -2.22 16 27 C -0.15 -1.57 9.90 -26.73 -0.26 -1.83 16 28 C -0.18 -1.59 9.58 -26.73 -0.26 -1.84 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.35 5.80 7.11 -39.29 -0.28 5.52 16 34 H 0.03 0.38 7.67 -51.93 -0.40 -0.02 16 35 H 0.07 0.88 8.08 -51.93 -0.42 0.47 16 36 H 0.07 0.63 7.94 -51.93 -0.41 0.22 16 37 H 0.08 0.87 6.78 -51.93 -0.35 0.52 16 38 H 0.07 0.83 7.67 -51.93 -0.40 0.43 16 39 H 0.07 0.73 7.82 -51.93 -0.41 0.32 16 40 H 0.41 3.72 8.18 -40.82 -0.33 3.39 16 41 H 0.23 -0.11 8.06 -52.49 -0.42 -0.53 16 42 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 43 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.09 0.75 8.00 -51.93 -0.42 0.34 16 LS Contribution 389.93 15.07 5.88 5.88 Total: -1.00 -37.57 389.93 -10.23 -47.79 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -7.49 Total: 13.19 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -3.86 Total: 7.52 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: 0.09 Total: -66.50 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.18 Total: -24.11 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.57 -10.23 -47.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167483443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.114 kcal (2) G-P(sol) polarization free energy of solvation -37.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds