Wall clock time and date at job start Sat Apr 11 2020 04:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.75887 * 125.20240 * 2 1 4 4 C 1.75880 * 90.97107 * 179.97438 * 3 2 1 5 5 C 1.33383 * 109.59459 * 359.73200 * 4 3 2 6 6 C 1.33390 * 125.20716 * 179.97438 * 2 1 3 7 7 C 1.50704 * 122.53609 * 0.02562 * 6 2 1 8 8 C 1.50701 * 109.46895 * 85.00761 * 7 6 2 9 9 O 1.21287 * 119.99942 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99804 * 180.02562 * 8 7 6 11 11 C 1.46918 * 120.63504 * 359.97438 * 10 8 7 12 12 C 1.53196 * 108.77870 * 233.59154 * 11 10 8 13 13 C 1.53039 * 109.30924 * 305.36198 * 12 11 10 14 14 H 1.08998 * 109.46355 * 301.35627 * 13 12 11 15 15 C 1.53004 * 109.45782 * 181.38658 * 13 12 11 16 16 N 1.46499 * 109.47198 * 65.00024 * 15 13 12 17 17 C 1.36939 * 119.99933 * 180.27608 * 16 15 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 15 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 15 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47173 * 60.00435 * 21 19 17 23 23 H 1.48497 * 109.47172 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47132 * 300.00314 * 21 19 17 25 25 C 1.53043 * 109.53725 * 61.36568 * 13 12 11 26 26 H 1.09002 * 109.49634 * 178.67894 * 25 13 12 27 27 C 1.53003 * 109.49823 * 58.58519 * 25 13 12 28 28 C 1.46933 * 120.62838 * 179.97438 * 10 8 7 29 29 H 1.08998 * 109.47073 * 270.01490 * 1 2 3 30 30 H 1.08997 * 109.47713 * 30.02094 * 1 2 3 31 31 H 1.08999 * 109.47204 * 150.02406 * 1 2 3 32 32 H 1.08000 * 125.19793 * 180.02562 * 4 3 2 33 33 H 1.08002 * 122.54215 * 180.23666 * 5 4 3 34 34 H 1.08996 * 109.47168 * 325.00882 * 7 6 2 35 35 H 1.09003 * 109.46747 * 204.99983 * 7 6 2 36 36 H 1.08997 * 109.59109 * 113.79856 * 11 10 8 37 37 H 1.09004 * 109.69886 * 353.44529 * 11 10 8 38 38 H 1.08996 * 109.49852 * 185.41111 * 12 11 10 39 39 H 1.08997 * 109.52190 * 65.33060 * 12 11 10 40 40 H 1.09009 * 109.46730 * 304.99811 * 15 13 12 41 41 H 1.08998 * 109.46846 * 185.00355 * 15 13 12 42 42 H 0.97001 * 119.99790 * 359.97438 * 16 15 13 43 43 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.46984 * 59.99851 * 27 25 13 45 45 H 1.08994 * 109.46900 * 179.97438 * 27 25 13 46 46 H 1.09000 * 109.47181 * 300.00019 * 27 25 13 47 47 H 1.09000 * 109.58421 * 246.19583 * 28 10 8 48 48 H 1.08995 * 109.58798 * 6.47731 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5209 1.4372 0.0000 4 6 3.9750 0.4478 0.0008 5 6 3.6380 -0.8427 0.0069 6 6 2.2760 -1.0899 0.0005 7 6 1.7052 -2.4847 0.0005 8 6 1.4010 -2.9029 -1.4149 9 8 1.6252 -2.1431 -2.3333 10 7 0.8789 -4.1210 -1.6602 11 6 0.6013 -5.0522 -0.5583 12 6 1.2930 -6.3867 -0.8543 13 6 0.8514 -6.8914 -2.2300 14 1 -0.2322 -7.0085 -2.2432 15 6 1.5135 -8.2411 -2.5144 16 7 1.0213 -9.2373 -1.5596 17 6 1.4807 -10.5261 -1.6169 18 1 2.2026 -10.8091 -2.3687 19 6 1.0187 -11.4686 -0.7086 20 7 0.1387 -11.1237 0.2074 21 14 1.6449 -13.2267 -0.7872 22 1 3.1176 -13.2367 -0.5966 23 1 1.0014 -14.0297 0.2834 24 1 1.3131 -13.8117 -2.1113 25 6 1.2681 -5.8828 -3.3030 26 1 0.9741 -6.2540 -4.2848 27 6 2.7855 -5.6913 -3.2622 28 6 0.5765 -4.5429 -3.0348 29 1 -0.3633 0.0003 1.0276 30 1 -0.3634 0.8897 -0.5141 31 1 -0.3633 -0.8902 -0.5134 32 1 4.9862 0.8273 0.0015 33 1 4.3721 -1.6349 0.0122 34 1 0.7882 -2.5019 0.5895 35 1 2.4295 -3.1736 0.4353 36 1 -0.4741 -5.2088 -0.4742 37 1 0.9848 -4.6412 0.3756 38 1 1.0167 -7.1164 -0.0932 39 1 2.3738 -6.2461 -0.8480 40 1 2.5945 -8.1439 -2.4133 41 1 1.2705 -8.5585 -3.5284 42 1 0.3733 -8.9829 -0.8841 43 1 -0.1843 -11.7825 0.8419 44 1 3.2774 -6.6457 -3.4503 45 1 3.0818 -4.9734 -4.0269 46 1 3.0785 -5.3189 -2.2806 47 1 -0.5009 -4.6578 -3.1530 48 1 0.9431 -3.7933 -3.7361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185246541.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:35 Heat of formation + Delta-G solvation = -2.371298 kcal Electronic energy + Delta-G solvation = -27187.052488 eV Core-core repulsion = 23561.363230 eV Total energy + Delta-G solvation = -3625.689258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.56989 -38.84638 -37.51092 -34.93230 -33.47447 -32.42075 -31.80684 -30.36042 -30.23759 -27.06774 -26.80830 -25.50764 -23.68550 -23.01281 -22.82738 -21.44412 -20.10062 -18.49556 -18.22332 -17.40024 -17.34959 -16.84700 -15.99207 -15.52936 -15.19949 -14.95231 -14.44730 -14.19925 -14.06854 -13.91817 -13.66357 -13.46060 -13.32482 -13.00041 -12.93295 -12.64465 -12.52092 -12.40669 -12.24632 -12.21790 -11.89411 -11.70803 -11.54911 -11.34966 -11.04907 -10.92553 -10.88854 -10.76407 -10.37702 -10.22918 -10.16789 -9.99592 -9.73999 -9.63937 -8.86546 -8.70300 -8.55342 -8.52048 -6.91679 -5.77930 -3.05700 0.84166 1.46248 1.81281 2.45176 2.62388 3.10594 3.43078 3.47652 3.48430 4.51930 4.57933 4.59447 4.65627 4.80869 4.91816 4.98780 5.02789 5.13844 5.16055 5.17783 5.25063 5.28632 5.34006 5.43228 5.48772 5.54093 5.62841 5.71430 5.74277 5.80779 5.86052 5.88594 5.91348 6.05695 6.09009 6.19896 6.22428 6.29724 6.34474 6.38155 6.46774 6.51792 6.67143 6.81771 6.94147 7.41211 7.68925 8.18190 8.41796 9.52790 10.11201 10.45814 11.45050 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.023420 B = 0.002231 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.291176 B =12549.190466 C =12785.839435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.161 4.161 3 S 0.086 5.914 4 C -0.217 4.217 5 C -0.116 4.116 6 C -0.089 4.089 7 C -0.082 4.082 8 C 0.517 3.483 9 O -0.537 6.537 10 N -0.606 5.606 11 C 0.104 3.896 12 C -0.128 4.128 13 C -0.088 4.088 14 H 0.071 0.929 15 C 0.158 3.842 16 N -0.732 5.732 17 C -0.238 4.238 18 H 0.068 0.932 19 C -0.014 4.014 20 N -0.935 5.935 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.098 4.098 26 H 0.080 0.920 27 C -0.144 4.144 28 C 0.118 3.882 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.163 0.837 33 H 0.138 0.862 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.021 0.979 41 H 0.017 0.983 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.065 0.935 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.140 24.269 0.573 24.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.278 4.278 3 S 0.351 5.649 4 C -0.352 4.352 5 C -0.146 4.146 6 C -0.101 4.101 7 C -0.124 4.124 8 C 0.305 3.695 9 O -0.414 6.414 10 N -0.340 5.340 11 C -0.019 4.019 12 C -0.166 4.166 13 C -0.107 4.107 14 H 0.089 0.911 15 C 0.031 3.969 16 N -0.376 5.376 17 C -0.369 4.369 18 H 0.086 0.914 19 C -0.210 4.210 20 N -0.584 5.584 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.118 4.118 26 H 0.099 0.901 27 C -0.201 4.201 28 C -0.005 4.005 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.180 0.820 33 H 0.156 0.844 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.039 0.961 41 H 0.035 0.965 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.088 26.112 0.036 26.195 hybrid contribution 0.516 -2.631 0.227 2.691 sum 2.604 23.480 0.263 23.626 Atomic orbital electron populations 1.20327 0.87989 1.03340 1.02425 1.24203 0.99769 0.95170 1.08639 1.84118 0.97233 1.09712 1.73884 1.25416 1.01606 0.96608 1.11576 1.19990 0.95499 0.96580 1.02511 1.18213 0.92865 0.94184 1.04886 1.20404 1.02943 0.93837 0.95266 1.20451 0.76921 0.81131 0.91038 1.90693 1.52550 1.51945 1.46234 1.48122 1.62961 1.14800 1.08123 1.21887 1.00759 0.90283 0.88929 1.21971 1.00720 0.95376 0.98528 1.21293 1.00554 0.95056 0.93766 0.91073 1.20715 0.95917 0.87099 0.93203 1.42372 1.51944 1.06427 1.36863 1.19184 1.19492 0.86247 1.11976 0.91364 1.24717 0.99746 0.98202 0.98352 1.69641 1.34329 1.33874 1.20541 0.86279 0.78143 0.84842 0.76994 1.21316 1.21705 1.21321 1.21462 0.96265 0.94443 0.99621 0.90145 1.21845 0.95142 1.01559 1.01528 1.21643 0.99300 0.96525 0.82990 0.90669 0.91250 0.90700 0.81990 0.84402 0.88071 0.87861 0.91092 0.90000 0.89405 0.91369 0.96113 0.96538 0.78316 0.93509 0.92014 0.93410 0.92657 0.91713 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 9.78 36.00 0.35 -0.34 16 2 C -0.16 -1.68 6.50 -36.00 -0.23 -1.92 16 3 S 0.09 0.83 23.33 -107.50 -2.51 -1.68 16 4 C -0.22 -2.08 11.23 29.04 0.33 -1.75 16 5 C -0.12 -1.21 9.96 -41.21 -0.41 -1.62 16 6 C -0.09 -0.97 4.29 -106.25 -0.46 -1.43 16 7 C -0.08 -0.80 3.69 -29.03 -0.11 -0.91 16 8 C 0.52 6.45 7.44 -10.99 -0.08 6.37 16 9 O -0.54 -8.58 15.45 5.55 0.09 -8.50 16 10 N -0.61 -7.08 2.41 -172.79 -0.42 -7.50 16 11 C 0.10 1.12 6.34 -3.71 -0.02 1.09 16 12 C -0.13 -1.75 4.90 -26.61 -0.13 -1.88 16 13 C -0.09 -1.31 1.96 -90.58 -0.18 -1.49 16 14 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 15 C 0.16 3.05 5.18 -4.04 -0.02 3.03 16 16 N -0.73 -17.85 5.32 -59.90 -0.32 -18.16 16 17 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 21 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C -0.10 -1.26 2.72 -90.51 -0.25 -1.50 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 27 C -0.14 -1.87 8.38 37.16 0.31 -1.56 16 28 C 0.12 1.42 5.82 -3.72 -0.02 1.40 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.68 7.19 -51.93 -0.37 0.31 16 32 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.10 0.79 7.31 -51.93 -0.38 0.41 16 35 H 0.10 0.87 7.66 -51.93 -0.40 0.47 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.71 5.95 -51.93 -0.31 0.40 16 38 H 0.09 1.40 7.15 -51.93 -0.37 1.02 16 39 H 0.07 0.96 6.34 -51.93 -0.33 0.63 16 40 H 0.02 0.41 6.74 -51.92 -0.35 0.06 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.38 9.68 6.85 -40.82 -0.28 9.40 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.06 0.84 6.58 -51.93 -0.34 0.50 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.74 5.97 -51.93 -0.31 0.43 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.09 1.16 7.00 -51.93 -0.36 0.80 16 LS Contribution 386.26 15.07 5.82 5.82 Total: -1.00 -32.33 386.26 -10.38 -42.71 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.58 Total: 6.79 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -1.17 Total: -9.71 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.01 Total: -52.60 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.33 -10.38 -42.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185246541.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.336 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds