Wall clock time and date at job start Sat Apr 11 2020 04:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 N 1.46900 * 109.47426 * 180.02562 * 7 6 5 9 9 C 1.46903 * 111.00027 * 293.95467 * 8 7 6 10 10 C 1.46894 * 111.00293 * 169.99979 * 8 7 6 11 11 C 1.53007 * 109.47103 * 189.99972 * 10 8 7 12 12 N 1.46500 * 109.46965 * 179.97438 * 11 10 8 13 13 C 1.34781 * 120.00147 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99534 * 0.02562 * 13 12 11 15 15 C 1.50692 * 120.00242 * 180.02562 * 13 12 11 16 16 S 1.81001 * 109.47228 * 179.97438 * 15 13 12 17 17 C 1.76194 * 99.99991 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00531 * 0.02562 * 17 16 15 19 19 C 1.38806 * 119.99932 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99835 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99954 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47446 * 89.99566 * 21 19 17 23 23 H 1.48497 * 109.46950 * 209.99950 * 21 19 17 24 24 H 1.48505 * 109.46791 * 329.99378 * 21 19 17 25 25 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 26 26 C 1.38234 * 120.00033 * 0.49775 * 25 5 4 27 27 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 28 28 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 29 29 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 30 30 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 33 33 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 34 34 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 35 35 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 36 36 H 1.09008 * 109.46673 * 60.00078 * 9 8 7 37 37 H 1.09003 * 109.47220 * 179.97438 * 9 8 7 38 38 H 1.08997 * 109.47236 * 299.99802 * 9 8 7 39 39 H 1.08997 * 109.47758 * 310.00036 * 10 8 7 40 40 H 1.08998 * 109.47349 * 70.00260 * 10 8 7 41 41 H 1.09001 * 109.47191 * 299.99938 * 11 10 8 42 42 H 1.09000 * 109.47075 * 60.00657 * 11 10 8 43 43 H 0.97000 * 120.00126 * 0.02562 * 12 11 10 44 44 H 1.09005 * 109.47346 * 299.99963 * 15 13 12 45 45 H 1.08998 * 109.47532 * 60.00036 * 15 13 12 46 46 H 0.97004 * 119.99801 * 180.02562 * 20 19 17 47 47 H 1.07999 * 119.99934 * 180.25938 * 25 5 4 48 48 H 1.08001 * 120.00294 * 179.76453 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 7 7.7631 -0.0021 1.4249 9 6 8.2880 -1.2541 0.8636 10 6 8.2946 0.2335 2.7739 11 6 9.8033 0.4752 2.6927 12 7 10.3332 0.7108 4.0380 13 6 11.6483 0.9489 4.2122 14 8 12.3929 0.9685 3.2550 15 6 12.1935 1.1907 5.5961 16 16 13.9781 1.4767 5.5000 17 6 14.3406 1.7242 7.2064 18 1 13.5493 1.6727 7.9397 19 6 15.6434 1.9843 7.6086 20 7 15.9143 2.1686 8.8834 21 14 17.0123 2.0727 6.3406 22 1 17.1472 3.4692 5.8543 23 1 18.2900 1.6387 6.9605 24 1 16.6878 1.1801 5.1989 25 6 3.5805 -1.1972 0.0010 26 6 2.1982 -1.1972 0.0009 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 6.1400 -0.8891 -0.5270 33 1 6.1401 0.8909 -0.5236 34 1 5.9328 0.8863 1.9473 35 1 5.9327 -0.8937 1.9440 36 1 7.9346 -1.3691 -0.1612 37 1 9.3776 -1.2270 0.8709 38 1 7.9411 -2.0951 1.4640 39 1 7.8095 1.1077 3.2081 40 1 8.0994 -0.6381 3.3987 41 1 10.2885 -0.3990 2.2586 42 1 9.9985 1.3468 2.0680 43 1 9.7375 0.6954 4.8035 44 1 11.7079 2.0646 6.0304 45 1 11.9988 0.3189 6.2208 46 1 16.8247 2.3508 9.1644 47 1 4.1205 -2.1325 0.0013 48 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663141817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:23 Heat of formation + Delta-G solvation = -22.250688 kcal Electronic energy + Delta-G solvation = -24537.209093 eV Core-core repulsion = 20910.657801 eV Total energy + Delta-G solvation = -3626.551293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.98079 -39.35867 -38.12435 -35.05749 -34.00095 -32.43273 -31.32452 -31.15016 -29.90973 -28.14913 -27.32320 -25.64872 -25.30373 -23.12478 -22.68304 -21.36988 -20.84606 -20.42735 -17.85721 -16.90036 -16.42731 -16.29525 -16.18404 -15.87583 -15.52818 -15.17101 -15.00773 -14.83622 -14.64913 -14.16136 -14.13201 -13.81532 -13.73619 -13.35456 -13.20927 -12.92480 -12.87335 -12.78972 -12.62665 -12.30857 -12.13392 -12.03060 -11.65624 -11.49820 -11.45544 -11.26045 -11.21082 -11.09475 -10.99915 -10.59735 -9.85202 -9.53364 -9.32491 -9.01015 -8.94381 -8.90265 -8.73981 -8.49219 -6.91027 -6.28371 -4.00007 0.90706 1.00440 2.73182 2.99161 3.15625 3.33264 3.34845 3.51406 3.55136 3.86433 4.34046 4.35210 4.39893 4.51448 4.61360 4.62003 4.64561 4.72271 4.77399 4.83804 4.91843 5.05811 5.10834 5.11091 5.13198 5.16504 5.17897 5.25337 5.27690 5.31994 5.36534 5.48487 5.57949 5.63003 5.70277 5.72655 5.77350 5.80637 5.90118 6.01571 6.01994 6.19081 6.24486 6.46976 6.60433 6.63789 6.67757 7.60854 7.94673 8.42097 8.50197 9.17931 10.80867 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.036145 B = 0.001393 C = 0.001370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.479321 B =20088.987435 C =20437.709091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.119 4.119 4 C -0.110 4.110 5 C -0.086 4.086 6 C -0.078 4.078 7 C 0.063 3.937 8 N -0.538 5.538 9 C 0.014 3.986 10 C 0.045 3.955 11 C 0.124 3.876 12 N -0.738 5.738 13 C 0.531 3.469 14 O -0.518 6.518 15 C -0.124 4.124 16 S -0.141 6.141 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.113 4.113 26 C -0.120 4.120 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.027 0.973 39 H 0.081 0.919 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.398 0.602 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.120 0.880 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.549 -6.646 -18.454 37.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 C -0.137 4.137 4 C -0.128 4.128 5 C -0.086 4.086 6 C -0.115 4.115 7 C -0.065 4.065 8 N -0.263 5.263 9 C -0.134 4.134 10 C -0.083 4.083 11 C 0.000 4.000 12 N -0.393 5.393 13 C 0.317 3.683 14 O -0.393 6.393 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.670 4.670 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.131 4.131 26 C -0.138 4.138 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.046 0.954 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.232 0.768 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.138 0.862 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -30.004 -6.197 -20.218 36.707 hybrid contribution -0.765 -0.610 1.784 2.034 sum -30.769 -6.807 -18.434 36.509 Atomic orbital electron populations 1.20798 0.91278 1.02792 1.02310 1.19941 0.96086 0.93272 0.99926 1.21052 0.94238 0.97545 1.00901 1.21088 0.94103 0.97751 0.99903 1.19850 0.95506 0.93186 1.00095 1.20600 0.90193 1.03824 0.96921 1.22098 0.86586 1.01287 0.96491 1.61841 1.07400 1.35493 1.21532 1.22567 1.01432 0.89314 1.00046 1.22252 0.95144 1.01257 0.89645 1.21215 0.91981 1.02348 0.84485 1.45883 1.09019 1.75080 1.09280 1.20256 0.81336 0.75605 0.91105 1.90704 1.57234 1.49091 1.42240 1.23277 1.02779 1.05443 0.95966 1.84794 0.99617 1.93723 1.13387 1.22325 0.98339 1.56197 0.90095 0.89400 1.24709 0.98040 0.93229 0.95277 1.69940 1.20965 1.46261 1.14563 0.86734 0.81757 0.80524 0.82844 1.19186 1.19939 1.15916 1.21047 0.94135 0.97608 1.00304 1.21030 0.94193 0.97532 1.01053 0.91210 0.91584 0.91537 0.86107 0.85872 0.90828 0.89901 0.90497 0.94579 0.90949 0.90601 0.95421 0.90011 0.94072 0.91561 0.90655 0.76788 0.88458 0.88479 0.91949 0.86213 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 10.01 36.01 0.36 -0.15 16 2 C -0.09 -0.61 5.88 -104.62 -0.62 -1.22 16 3 C -0.12 -0.80 9.70 -39.58 -0.38 -1.18 16 4 C -0.11 -0.77 9.70 -39.58 -0.38 -1.15 16 5 C -0.09 -0.60 5.13 -104.63 -0.54 -1.14 16 6 C -0.08 -0.50 5.27 -27.89 -0.15 -0.65 16 7 C 0.06 0.44 4.94 -3.83 -0.02 0.43 16 8 N -0.54 -4.43 4.76 -242.91 -1.16 -5.58 16 9 C 0.01 0.11 9.13 60.07 0.55 0.66 16 10 C 0.05 0.38 5.07 -3.82 -0.02 0.36 16 11 C 0.12 1.41 5.61 -4.04 -0.02 1.39 16 12 N -0.74 -9.35 5.56 -60.29 -0.33 -9.69 16 13 C 0.53 9.48 7.85 -10.99 -0.09 9.40 16 14 O -0.52 -11.33 15.86 5.56 0.09 -11.24 16 15 C -0.12 -2.40 6.16 36.00 0.22 -2.18 16 16 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 17 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 18 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 19 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.63 13.97 55.49 0.78 -25.86 16 21 Si 0.86 21.86 27.74 -169.99 -4.72 17.15 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 25 C -0.11 -0.77 9.70 -39.58 -0.38 -1.16 16 26 C -0.12 -0.79 9.70 -39.58 -0.38 -1.18 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 29 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 30 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.07 0.45 6.50 -51.93 -0.34 0.11 16 33 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.08 0.54 7.93 -51.93 -0.41 0.13 16 35 H 0.04 0.26 8.12 -51.93 -0.42 -0.16 16 36 H 0.07 0.47 6.47 -51.92 -0.34 0.14 16 37 H 0.08 0.64 6.30 -51.93 -0.33 0.31 16 38 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 40 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 41 H 0.07 0.81 6.47 -51.93 -0.34 0.48 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.40 3.83 8.47 -40.82 -0.35 3.48 16 44 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 45 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 46 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 48 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 406.63 15.07 6.13 6.13 Total: -1.00 -34.37 406.63 -10.84 -45.21 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.99 Total: -0.68 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.64 Total: -9.83 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -0.72 Total: -41.13 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.37 -10.84 -45.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663141817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.958 kcal (2) G-P(sol) polarization free energy of solvation -34.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds