Wall clock time and date at job start Sat Apr 11 2020 04:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 N 1.46900 * 109.47426 * 180.02562 * 7 6 5 9 9 C 1.46903 * 111.00027 * 293.95467 * 8 7 6 10 10 C 1.46894 * 111.00293 * 169.99979 * 8 7 6 11 11 C 1.53007 * 109.47103 * 189.99972 * 10 8 7 12 12 N 1.46500 * 109.46965 * 179.97438 * 11 10 8 13 13 C 1.34781 * 120.00147 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99534 * 0.02562 * 13 12 11 15 15 C 1.50692 * 120.00242 * 180.02562 * 13 12 11 16 16 S 1.81001 * 109.47228 * 179.97438 * 15 13 12 17 17 C 1.76194 * 99.99991 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00531 * 0.02562 * 17 16 15 19 19 C 1.38806 * 119.99932 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99835 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99954 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47446 * 89.99566 * 21 19 17 23 23 H 1.48497 * 109.46950 * 209.99950 * 21 19 17 24 24 H 1.48505 * 109.46791 * 329.99378 * 21 19 17 25 25 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 26 26 C 1.38234 * 120.00033 * 0.49775 * 25 5 4 27 27 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 28 28 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 29 29 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 30 30 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 33 33 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 34 34 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 35 35 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 36 36 H 1.09008 * 109.46673 * 60.00078 * 9 8 7 37 37 H 1.09003 * 109.47220 * 179.97438 * 9 8 7 38 38 H 1.08997 * 109.47236 * 299.99802 * 9 8 7 39 39 H 1.08997 * 109.47758 * 310.00036 * 10 8 7 40 40 H 1.08998 * 109.47349 * 70.00260 * 10 8 7 41 41 H 1.09001 * 109.47191 * 299.99938 * 11 10 8 42 42 H 1.09000 * 109.47075 * 60.00657 * 11 10 8 43 43 H 0.97000 * 120.00126 * 0.02562 * 12 11 10 44 44 H 1.09005 * 109.47346 * 299.99963 * 15 13 12 45 45 H 1.08998 * 109.47532 * 60.00036 * 15 13 12 46 46 H 0.97004 * 119.99801 * 180.02562 * 20 19 17 47 47 H 1.07999 * 119.99934 * 180.25938 * 25 5 4 48 48 H 1.08001 * 120.00294 * 179.76453 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 7 7.7631 -0.0021 1.4249 9 6 8.2880 -1.2541 0.8636 10 6 8.2946 0.2335 2.7739 11 6 9.8033 0.4752 2.6927 12 7 10.3332 0.7108 4.0380 13 6 11.6483 0.9489 4.2122 14 8 12.3929 0.9685 3.2550 15 6 12.1935 1.1907 5.5961 16 16 13.9781 1.4767 5.5000 17 6 14.3406 1.7242 7.2064 18 1 13.5493 1.6727 7.9397 19 6 15.6434 1.9843 7.6086 20 7 15.9143 2.1686 8.8834 21 14 17.0123 2.0727 6.3406 22 1 17.1472 3.4692 5.8543 23 1 18.2900 1.6387 6.9605 24 1 16.6878 1.1801 5.1989 25 6 3.5805 -1.1972 0.0010 26 6 2.1982 -1.1972 0.0009 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 6.1400 -0.8891 -0.5270 33 1 6.1401 0.8909 -0.5236 34 1 5.9328 0.8863 1.9473 35 1 5.9327 -0.8937 1.9440 36 1 7.9346 -1.3691 -0.1612 37 1 9.3776 -1.2270 0.8709 38 1 7.9411 -2.0951 1.4640 39 1 7.8095 1.1077 3.2081 40 1 8.0994 -0.6381 3.3987 41 1 10.2885 -0.3990 2.2586 42 1 9.9985 1.3468 2.0680 43 1 9.7375 0.6954 4.8035 44 1 11.7079 2.0646 6.0304 45 1 11.9988 0.3189 6.2208 46 1 16.8247 2.3508 9.1644 47 1 4.1205 -2.1325 0.0013 48 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663141817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:22 Heat of formation + Delta-G solvation = -44.205619 kcal Electronic energy + Delta-G solvation = -24538.161131 eV Core-core repulsion = 20910.657801 eV Total energy + Delta-G solvation = -3627.503330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.72714 -40.40706 -38.85473 -36.02477 -34.72591 -34.66093 -32.05271 -31.78867 -30.90068 -29.09546 -27.92653 -27.79790 -25.98771 -23.59313 -23.36954 -22.12721 -21.72913 -21.30729 -19.87509 -17.94379 -17.52075 -17.20216 -17.06105 -16.93142 -16.64184 -16.24052 -16.06417 -15.80610 -15.38575 -15.35756 -14.97502 -14.87846 -14.62409 -14.51185 -14.27679 -13.97153 -13.60921 -13.43812 -13.34312 -13.33237 -13.02400 -12.99792 -12.94349 -12.67160 -12.62578 -12.25747 -12.17067 -11.96996 -11.86801 -11.78820 -11.59581 -11.16710 -11.04633 -10.53187 -10.14453 -9.80968 -9.42421 -9.30928 -8.99392 -8.51291 -6.22102 0.42498 0.51959 0.98981 1.32047 1.47131 1.55536 1.55985 2.13508 2.25817 2.69530 2.82265 2.87193 3.06883 3.77293 3.87832 3.93310 3.97226 4.03972 4.12304 4.16489 4.17754 4.23624 4.25265 4.43537 4.47512 4.49149 4.55278 4.60079 4.63701 4.68229 4.82544 4.83589 4.86122 4.92886 4.97787 4.99817 5.05897 5.19202 5.24048 5.34580 5.36813 5.54051 5.71003 5.73404 5.75339 5.99469 6.03382 6.11684 6.16396 6.45611 6.94103 7.18589 8.61091 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.036145 B = 0.001393 C = 0.001370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.479321 B =20088.987435 C =20437.709091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.103 4.103 3 C -0.131 4.131 4 C -0.122 4.122 5 C -0.095 4.095 6 C -0.070 4.070 7 C 0.069 3.931 8 N -0.549 5.549 9 C 0.015 3.985 10 C 0.055 3.945 11 C 0.127 3.873 12 N -0.711 5.711 13 C 0.535 3.465 14 O -0.563 6.563 15 C -0.111 4.111 16 S -0.177 6.177 17 C -0.530 4.530 18 H 0.063 0.937 19 C 0.047 3.953 20 N -0.917 5.917 21 Si 0.914 3.086 22 H -0.262 1.262 23 H -0.259 1.259 24 H -0.237 1.237 25 C -0.122 4.122 26 C -0.131 4.131 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.033 0.967 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.417 0.583 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.277 0.723 47 H 0.130 0.870 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.210 -7.142 -19.336 39.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.103 4.103 3 C -0.149 4.149 4 C -0.140 4.140 5 C -0.096 4.096 6 C -0.108 4.108 7 C -0.059 4.059 8 N -0.273 5.273 9 C -0.133 4.133 10 C -0.074 4.074 11 C 0.003 3.997 12 N -0.366 5.366 13 C 0.321 3.679 14 O -0.442 6.442 15 C -0.262 4.262 16 S 0.050 5.950 17 C -0.677 4.677 18 H 0.081 0.919 19 C -0.158 4.158 20 N -0.555 5.555 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.161 1.161 25 C -0.140 4.140 26 C -0.149 4.149 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.148 0.852 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.254 0.746 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.086 0.914 47 H 0.148 0.852 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -31.727 -6.702 -21.079 38.676 hybrid contribution -0.447 -0.480 2.050 2.152 sum -32.173 -7.181 -19.029 38.063 Atomic orbital electron populations 1.20829 0.89919 1.03438 1.02886 1.20256 0.97287 0.93251 0.99478 1.21298 0.94386 0.98304 1.00936 1.21276 0.94491 0.98140 1.00081 1.19941 0.95717 0.93388 1.00531 1.20516 0.89944 1.03747 0.96583 1.22056 0.85654 1.01337 0.96812 1.61819 1.08171 1.35969 1.21370 1.22568 1.00746 0.89263 1.00755 1.22145 0.92764 1.02269 0.90186 1.21261 0.94004 1.01358 0.83062 1.45619 1.07410 1.72694 1.10860 1.19955 0.82658 0.75623 0.89693 1.90696 1.58720 1.51607 1.43128 1.23267 0.98090 1.07074 0.97750 1.84733 1.05552 1.93958 1.10790 1.22469 0.97963 1.55778 0.91518 0.91902 1.25546 1.00324 0.92935 0.97031 1.70016 1.21952 1.47301 1.16226 0.85876 0.79459 0.80618 0.80483 1.18700 1.18298 1.16109 1.21252 0.94493 0.98019 1.00274 1.21291 0.94379 0.98276 1.00979 0.90598 0.90909 0.90953 0.84906 0.85223 0.90448 0.90392 0.90461 0.94429 0.90017 0.91683 0.94880 0.88855 0.92963 0.92295 0.92101 0.74563 0.86683 0.86676 0.91369 0.85216 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 71.24 0.71 -0.13 16 2 C -0.10 -1.23 5.88 -19.86 -0.12 -1.35 16 3 C -0.13 -1.63 9.70 22.27 0.22 -1.42 16 4 C -0.12 -1.59 9.70 22.27 0.22 -1.38 16 5 C -0.10 -1.24 5.13 -19.87 -0.10 -1.34 16 6 C -0.07 -0.82 5.27 29.84 0.16 -0.66 16 7 C 0.07 0.84 4.94 86.30 0.43 1.27 16 8 N -0.55 -8.02 4.76 -922.43 -4.39 -12.41 16 9 C 0.01 0.20 9.13 127.69 1.17 1.36 16 10 C 0.05 0.79 5.07 86.31 0.44 1.23 16 11 C 0.13 2.68 5.61 86.38 0.48 3.17 16 12 N -0.71 -16.43 5.56 -463.05 -2.57 -19.00 16 13 C 0.54 18.32 7.85 87.65 0.69 19.01 16 14 O -0.56 -24.31 15.86 -3.04 -0.05 -24.36 16 15 C -0.11 -4.12 6.16 71.23 0.44 -3.69 16 16 S -0.18 -8.95 18.55 -56.49 -1.05 -10.00 16 17 C -0.53 -30.84 10.04 67.96 0.68 -30.16 16 18 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 19 C 0.05 2.76 5.50 84.86 0.47 3.23 16 20 N -0.92 -55.84 13.97 21.65 0.30 -55.54 16 21 Si 0.91 45.08 27.74 68.60 1.90 46.99 16 22 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 25 C -0.12 -1.53 9.70 22.27 0.22 -1.31 16 26 C -0.13 -1.58 9.70 22.27 0.22 -1.37 16 27 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.43 8.09 -2.39 -0.02 0.41 16 29 H 0.07 0.44 8.09 -2.39 -0.02 0.42 16 30 H 0.13 1.20 8.06 -2.91 -0.02 1.18 16 31 H 0.13 1.41 8.06 -2.91 -0.02 1.38 16 32 H 0.08 0.83 6.50 -2.39 -0.02 0.82 16 33 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 34 H 0.08 0.95 7.93 -2.38 -0.02 0.93 16 35 H 0.04 0.46 8.12 -2.38 -0.02 0.44 16 36 H 0.08 0.94 6.47 -2.38 -0.02 0.93 16 37 H 0.06 1.03 6.30 -2.39 -0.02 1.01 16 38 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.09 1.16 7.93 -2.39 -0.02 1.14 16 40 H 0.05 0.67 8.12 -2.39 -0.02 0.65 16 41 H 0.06 1.38 6.47 -2.39 -0.02 1.36 16 42 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.42 6.68 8.47 -92.71 -0.79 5.89 16 44 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 45 H 0.12 3.89 8.14 -2.40 -0.02 3.87 16 46 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 47 H 0.13 1.26 8.06 -2.91 -0.02 1.23 16 48 H 0.13 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -74.05 406.63 0.57 -73.48 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.12 Total: 14.39 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 6.30 Total: -13.54 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -6.66 Total: -86.96 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.36 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.99 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.05 Total: -10.00 kcal Total: -74.05 0.57 -73.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663141817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.276 kcal (2) G-P(sol) polarization free energy of solvation -74.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds