Wall clock time and date at job start Sat Apr 11 2020 04:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47270 * 2 1 4 4 S 1.70623 * 124.52277 * 270.26811 * 3 2 1 5 5 C 1.75832 * 91.56378 * 180.02562 * 4 3 2 6 6 C 1.46583 * 125.46113 * 179.97438 * 5 4 3 7 7 O 1.21701 * 120.00411 * 186.19236 * 6 5 4 8 8 N 1.34774 * 119.99465 * 6.18768 * 6 5 4 9 9 C 1.48123 * 127.03207 * 176.02344 * 8 6 5 10 10 C 1.54946 * 103.25558 * 219.56019 * 9 8 6 11 11 H 1.08998 * 110.89442 * 81.02947 * 10 9 8 12 12 C 1.52998 * 110.73913 * 204.28495 * 10 9 8 13 13 N 1.46499 * 109.47304 * 288.41871 * 12 10 9 14 14 C 1.36930 * 120.00462 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99844 * 359.97438 * 14 13 12 16 16 C 1.38807 * 120.00317 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00088 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 120.00129 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46814 * 90.00328 * 18 16 14 20 20 H 1.48494 * 109.46990 * 210.00073 * 18 16 14 21 21 H 1.48498 * 109.46850 * 330.00382 * 18 16 14 22 22 C 1.54615 * 102.83602 * 322.61942 * 10 9 8 23 23 H 1.08997 * 110.41707 * 262.91579 * 22 10 9 24 24 C 1.53007 * 110.32457 * 140.74127 * 22 10 9 25 25 C 1.47488 * 127.03574 * 356.34615 * 8 6 5 26 26 C 1.36651 * 109.08442 * 359.70158 * 5 4 3 27 27 C 1.33819 * 124.52448 * 90.00012 * 3 2 1 28 28 C 1.50695 * 122.44699 * 0.02562 * 27 3 2 29 29 H 1.08991 * 109.47404 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46780 * 300.00442 * 1 2 3 31 31 H 1.08994 * 109.46777 * 59.99663 * 1 2 3 32 32 H 1.08998 * 109.47506 * 239.99565 * 2 1 3 33 33 H 1.09001 * 109.47307 * 119.99970 * 2 1 3 34 34 H 1.09004 * 110.66005 * 338.00018 * 9 8 6 35 35 H 1.08995 * 110.66359 * 101.11731 * 9 8 6 36 36 H 1.09003 * 109.47005 * 48.41648 * 12 10 9 37 37 H 1.08993 * 109.47323 * 168.41661 * 12 10 9 38 38 H 0.97006 * 119.99541 * 0.02562 * 13 12 10 39 39 H 0.97003 * 120.00395 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.47371 * 302.92732 * 24 22 10 41 41 H 1.08997 * 109.46858 * 62.92535 * 24 22 10 42 42 H 1.09000 * 109.47319 * 182.92316 * 24 22 10 43 43 H 1.08996 * 109.91130 * 273.64166 * 25 8 6 44 44 H 1.08997 * 109.91263 * 34.73153 * 25 8 6 45 45 H 1.07993 * 123.35756 * 180.25349 * 26 5 4 46 46 H 1.08996 * 109.47339 * 270.00061 * 28 27 3 47 47 H 1.08998 * 109.47332 * 30.00306 * 28 27 3 48 48 H 1.09001 * 109.47449 * 150.00090 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3485 2.3346 -1.4057 5 6 2.8453 3.7238 -0.4492 6 6 3.2982 5.0095 -0.9883 7 8 3.7262 5.8671 -0.2383 8 7 3.2406 5.2418 -2.3146 9 6 3.5766 6.5031 -3.0148 10 6 2.4857 6.6026 -4.1106 11 1 1.5577 7.0008 -3.7003 12 6 2.9703 7.4604 -5.2812 13 7 3.0191 8.8656 -4.8696 14 6 3.4268 9.8253 -5.7571 15 1 3.7128 9.5463 -6.7605 16 6 3.4725 11.1567 -5.3672 17 7 3.1245 11.4967 -4.1443 18 14 4.0294 12.4659 -6.5778 19 1 2.8537 12.9827 -7.3235 20 1 4.6760 13.5801 -5.8392 21 1 5.0011 11.8755 -7.5331 22 6 2.3037 5.1311 -4.5488 23 1 2.8900 4.9257 -5.4443 24 6 0.8249 4.8311 -4.8024 25 6 2.8238 4.2942 -3.3652 26 6 2.7358 3.4150 0.8775 27 6 2.2852 2.1358 1.1025 28 6 2.0892 1.5798 2.4894 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.5143 7.3504 -2.3319 35 1 4.5680 6.4415 -3.4635 36 1 3.9662 7.1352 -5.5821 37 1 2.2834 7.3513 -6.1204 38 1 2.7633 9.1160 -3.9680 39 1 3.1561 12.4271 -3.8719 40 1 0.2498 5.0523 -3.9033 41 1 0.4648 5.4489 -5.6251 42 1 0.7065 3.7786 -5.0597 43 1 3.6758 3.6928 -3.6819 44 1 2.0321 3.6467 -2.9882 45 1 2.9791 4.1068 1.6703 46 1 1.0730 1.7880 2.8240 47 1 2.2537 0.5024 2.4755 48 1 2.7993 2.0469 3.1718 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106960608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:42:08 Heat of formation + Delta-G solvation = -5.417279 kcal Electronic energy + Delta-G solvation = -26684.342822 eV Core-core repulsion = 23058.521481 eV Total energy + Delta-G solvation = -3625.821341 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.14174 -38.97772 -37.66951 -34.68044 -34.06569 -32.85684 -31.45210 -30.69123 -29.23767 -27.66264 -26.64036 -25.90497 -24.24708 -23.11800 -22.45345 -21.27612 -20.05500 -19.95047 -18.38369 -18.08017 -17.00716 -16.35371 -15.93266 -15.82198 -14.79866 -14.75517 -14.62552 -14.41486 -14.16169 -13.90163 -13.64932 -13.49729 -13.33959 -13.02507 -12.96261 -12.90366 -12.52255 -12.45923 -12.38327 -12.18839 -11.93748 -11.86170 -11.63787 -11.49553 -11.34725 -11.14043 -10.85763 -10.75301 -10.55805 -10.45137 -10.34429 -10.02051 -9.94285 -9.65735 -8.93835 -8.86349 -8.58287 -8.52930 -6.91505 -5.74053 -3.03677 0.36614 1.29588 1.72694 2.18566 2.91909 3.19529 3.45233 3.49989 3.52271 4.32050 4.38976 4.49280 4.59834 4.62548 4.80125 4.84245 4.87456 4.90713 5.06919 5.14045 5.22938 5.30749 5.35283 5.39845 5.45364 5.48169 5.49865 5.55054 5.58922 5.63306 5.70079 5.76292 5.77768 5.81140 5.94923 6.04230 6.08451 6.14569 6.17211 6.18944 6.26787 6.39303 6.46447 6.70525 6.83216 7.52786 7.71184 8.13732 8.43953 9.55193 10.12223 10.46456 11.48550 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.023282 B = 0.002431 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.373426 B =11516.663462 C =12338.322566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.054 4.054 3 C -0.217 4.217 4 S 0.211 5.789 5 C -0.257 4.257 6 C 0.604 3.396 7 O -0.527 6.527 8 N -0.618 5.618 9 C 0.117 3.883 10 C -0.102 4.102 11 H 0.085 0.915 12 C 0.165 3.835 13 N -0.733 5.733 14 C -0.241 4.241 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.096 4.096 23 H 0.091 0.909 24 C -0.143 4.143 25 C 0.097 3.903 26 C -0.051 4.051 27 C -0.122 4.122 28 C -0.093 4.093 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.151 0.849 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.152 -28.081 7.602 29.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 C -0.336 4.336 4 S 0.481 5.519 5 C -0.378 4.378 6 C 0.392 3.608 7 O -0.405 6.405 8 N -0.351 5.351 9 C -0.004 4.004 10 C -0.122 4.122 11 H 0.104 0.896 12 C 0.037 3.963 13 N -0.377 5.377 14 C -0.372 4.372 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.116 4.116 23 H 0.110 0.890 24 C -0.200 4.200 25 C -0.028 4.028 26 C -0.084 4.084 27 C -0.134 4.134 28 C -0.152 4.152 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.169 0.831 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.948 -27.861 6.396 29.011 hybrid contribution 0.300 1.126 1.198 1.671 sum -4.648 -26.735 7.594 28.179 Atomic orbital electron populations 1.21775 0.94145 1.02007 1.02624 1.20118 0.96286 0.89666 1.03213 1.24491 1.07807 1.02134 0.99122 1.83282 1.60432 1.01849 1.06328 1.24478 1.16137 0.99177 0.97965 1.16533 0.78377 0.85337 0.80510 1.90863 1.46824 1.45771 1.57084 1.48693 1.66002 1.15763 1.04660 1.22623 0.98314 0.85657 0.93804 1.22602 0.99104 0.93887 0.96579 0.89621 1.20624 0.97290 0.85317 0.93041 1.42374 1.80696 1.00418 1.14246 1.19195 1.36793 0.87266 0.93978 0.91173 1.24756 1.02332 0.97242 0.96608 1.69661 1.54316 1.16968 1.17022 0.86195 0.78160 0.81769 0.80078 1.21748 1.21778 1.20770 1.22069 0.97595 0.94894 0.97021 0.89043 1.21857 0.94633 1.01240 1.02319 1.22444 0.99418 0.92311 0.88594 1.20598 0.96814 0.95759 0.95206 1.18613 1.04408 0.93904 0.96467 1.20508 1.02176 1.00680 0.91804 0.91984 0.92227 0.92378 0.90856 0.89974 0.89033 0.90387 0.96028 0.95815 0.78189 0.93459 0.92567 0.91589 0.92620 0.90849 0.90778 0.83108 0.91320 0.91557 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.90 37.16 0.37 -0.48 16 2 C -0.05 -0.34 6.03 -27.88 -0.17 -0.51 16 3 C -0.22 -1.95 5.53 -35.86 -0.20 -2.15 16 4 S 0.21 2.05 18.61 -107.50 -2.00 0.05 16 5 C -0.26 -3.43 6.39 -36.79 -0.23 -3.66 16 6 C 0.60 9.99 7.85 -12.90 -0.10 9.89 16 7 O -0.53 -10.72 17.08 5.19 0.09 -10.63 16 8 N -0.62 -9.28 3.29 -171.33 -0.56 -9.84 16 9 C 0.12 1.97 6.44 -2.12 -0.01 1.96 16 10 C -0.10 -1.61 2.62 -88.74 -0.23 -1.84 16 11 H 0.09 1.46 7.86 -51.93 -0.41 1.05 16 12 C 0.17 3.17 5.58 -4.04 -0.02 3.15 16 13 N -0.73 -18.41 5.52 -59.91 -0.33 -18.74 16 14 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 15 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 18 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 C -0.10 -1.12 3.17 -89.24 -0.28 -1.41 16 23 H 0.09 0.97 7.85 -51.93 -0.41 0.57 16 24 C -0.14 -1.46 8.89 37.16 0.33 -1.13 16 25 C 0.10 1.10 5.46 -2.97 -0.02 1.09 16 26 C -0.05 -0.61 9.80 -40.43 -0.40 -1.01 16 27 C -0.12 -1.20 5.78 -106.45 -0.62 -1.81 16 28 C -0.09 -0.66 9.84 36.00 0.35 -0.31 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.44 6.57 -51.93 -0.34 0.10 16 34 H 0.09 1.80 7.88 -51.93 -0.41 1.39 16 35 H 0.08 1.30 7.94 -51.93 -0.41 0.89 16 36 H 0.02 0.42 7.99 -51.93 -0.41 0.00 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.38 10.30 7.67 -40.82 -0.31 9.99 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.76 4.38 -28.44 -0.12 0.63 16 45 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.39 6.54 -51.93 -0.34 0.05 16 48 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -33.42 395.62 -10.41 -43.83 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.79 Total: 5.29 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -1.48 Total: -5.60 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.17 Total: -56.46 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.00 Total: 0.05 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.42 -10.41 -43.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106960608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.415 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds